View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF4201-Insertion-9 (Length: 670)
Name: NF4201-Insertion-9
Description: NF4201
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4201-Insertion-9 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 485; Significance: 0; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 485; E-Value: 0
Query Start/End: Original strand, 8 - 544
Target Start/End: Complemental strand, 52238244 - 52237703
Alignment:
| Q |
8 |
gatcattcaagtgtttttgttccaaatggataatagtgcatttaatttttgagttatgaagaagaaacatgtttagctattgtcaatctgggtatatgtt |
107 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
|
|
| T |
52238244 |
gatcattcaagtgtttttgttccaaatggataatagtgcatttgatttttgagttatgaagaagaaacatgtttagctattgtcaatctaggtatatgtt |
52238145 |
T |
|
| Q |
108 |
tcaagttttggcattcttcttccttaacttataaaccaaactatagagctttaagatttggtagtccagtccaaaggtaaaatcaattcatgatattctc |
207 |
Q |
| |
|
|||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
52238144 |
tcaagttttggcattcttcttccttaacttgtaaaccaaactatagagctttaagatttggtagtccagtccaaaggtaaaatcaattcatgatattctc |
52238045 |
T |
|
| Q |
208 |
tgatctacttaatggttgtaattcatcatgtttttacnnnnnnntgaatgtataagtctgtatttacaatgcaggaggcatggactcaattcaacatggt |
307 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
52238044 |
tgatctacttaatggttgtaattcatcatgtttttacaaaaaaatgaatgtataagtctgtatttacaatgcaggaggcatggactcaattcaacatggt |
52237945 |
T |
|
| Q |
308 |
tggtgcactctaatgcctgtcaatacttaataccaacatgagaaaaagttatcgttgataccttatgggtagctcccttccagagtctgtctgccaggga |
407 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
52237944 |
tggtgcactctaatgcctgtcaatacttaataccaacatgagaaaaagttatcgttgataccttatgggtagctcccttccagagtctgtctgccaggga |
52237845 |
T |
|
| Q |
408 |
atagattttgttcttattggaattggaagtgttacttcgtattgttgtaac-----taatttcattgaaaaaatatataaatgagtgacttcactcaggt |
502 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
52237844 |
atagattttgttcttattggaattggaagtgttacttcgtattgttgtagctaatttaatttcattgaaaaaatatataaatgagtgacttcactcaggt |
52237745 |
T |
|
| Q |
503 |
gtgcatacaaagcattttttgccgaataatatagaagtcatc |
544 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
52237744 |
gtgcatacaaagcattttttgccgaataatatagaagtcatc |
52237703 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 91; E-Value: 9e-44
Query Start/End: Original strand, 580 - 670
Target Start/End: Complemental strand, 52237661 - 52237571
Alignment:
| Q |
580 |
ttatgtattagcacagtaaatatatctacaggaaatgcacggcaacagagttcaagctggtctctctgtatcaactttttctgtctcttaa |
670 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
52237661 |
ttatgtattagcacagtaaatatatctacaggaaatgcacggcaacagagttcaagctggtctctctgtatcaactttttctgtctcttaa |
52237571 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University