View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4201_high_3 (Length: 371)
Name: NF4201_high_3
Description: NF4201
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4201_high_3 |
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Alignment Details
Target: chr6 (Bit Score: 275; Significance: 1e-154; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 275; E-Value: 1e-154
Query Start/End: Original strand, 16 - 350
Target Start/End: Complemental strand, 6186757 - 6186423
Alignment:
| Q |
16 |
acatcatcgatcggaaaagttggtttggttgtcgcgtttttagtcttggttgttttattgattcgatatttcaccggtaacacaaagactgataacggag |
115 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||| |||||||| | ||| |||||||||||||||| || |||||||||||| ||||| |
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| T |
6186757 |
acatcatcgatcggaaaagttggtttggttgtcgcgtttttagtcctggttgttctcttggttcgatatttcaccgggaatacaaagactgatgccggag |
6186658 |
T |
|
| Q |
116 |
ttagagaattcaacggtagaaagactagtttcgacgatgtgatgaatgcgattattggaattattgctgatgctgttactattgttgttgttgcaattcc |
215 |
Q |
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||||||||||||| ||||||||||| ||||| || |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6186657 |
ttagagaattcaatggtagaaagacgagttttgatgatgtgatgaatgcaattattggaattattgctgatgctgttactattgttgttgttgcaattcc |
6186558 |
T |
|
| Q |
216 |
tgagggtttgccattagctgtgacattgacacttgcatattcaatgaagaaaatgatggctgatcaagcaatggtgagaaaactctctgcatgtgagact |
315 |
Q |
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| T |
6186557 |
tgagggtttgccattagctgtgacattgacacttgcatattcaatgaagaaaatgatggctgatgaagcaatggtgagaaaactctctgcatgtgagact |
6186458 |
T |
|
| Q |
316 |
atgggatctgctactactatttgtaccgacaaaac |
350 |
Q |
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| T |
6186457 |
atgggatctgctactactatttgcaccgacaaaac |
6186423 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 227; Significance: 1e-125; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 227; E-Value: 1e-125
Query Start/End: Original strand, 16 - 338
Target Start/End: Complemental strand, 4243701 - 4243379
Alignment:
| Q |
16 |
acatcatcgatcggaaaagttggtttggttgtcgcgtttttagtcttggttgttttattgattcgatatttcaccggtaacacaaagactgataacggag |
115 |
Q |
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| T |
4243701 |
acatcctcaatcggaaaggttggtttggctgtcgcatttttagtccttgttgttctgttgattcgatatttcaccgggaacacaaagactgataacggag |
4243602 |
T |
|
| Q |
116 |
ttagagaattcaacggtagaaagactagtttcgacgatgtgatgaatgcgattattggaattattgctgatgctgttactattgttgttgttgcaattcc |
215 |
Q |
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||||||| |||||||||||||||||||||||||| |||||||||||||| |||||||||||||||||||||||||||||||||| |||||||| || || |
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| T |
4243601 |
ttagagagttcaacggtagaaagactagtttcgatgatgtgatgaatgcagttattggaattattgctgatgctgttactattgtcgttgttgctatccc |
4243502 |
T |
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| Q |
216 |
tgagggtttgccattagctgtgacattgacacttgcatattcaatgaagaaaatgatggctgatcaagcaatggtgagaaaactctctgcatgtgagact |
315 |
Q |
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|||||||| ||||||||||||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||| |
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| T |
4243501 |
cgagggtttaccattagctgtgacattgacactcgcttattcaatgaagaaaatgatggctgatcaagcaatggtgagaaaactttctgcatgtgaaact |
4243402 |
T |
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| Q |
316 |
atgggatctgctactactatttg |
338 |
Q |
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|||||||| |||||||||||||| |
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| T |
4243401 |
atgggatcagctactactatttg |
4243379 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 47; Significance: 9e-18; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 193 - 323
Target Start/End: Complemental strand, 38358195 - 38358065
Alignment:
| Q |
193 |
actattgttgttgttgcaattcctgagggtttgccattagctgtgacattgacacttgcatattcaatgaagaaaatgatggctgatcaagcaatggtga |
292 |
Q |
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|||||||| || ||||| || ||||||||||||||||| ||||||||| | || ||||| || || ||||| | ||||||||| ||||| || ||||||| |
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| T |
38358195 |
actattgtggtcgttgccatccctgagggtttgccattggctgtgacactaactcttgcttactccatgaaaagaatgatggcagatcatgctatggtga |
38358096 |
T |
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| Q |
293 |
gaaaactctctgcatgtgagactatgggatc |
323 |
Q |
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| T |
38358095 |
ggaaactttcagcttgtgaaactatgggatc |
38358065 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 186 - 244
Target Start/End: Original strand, 47487502 - 47487560
Alignment:
| Q |
186 |
tgctgttactattgttgttgttgcaattcctgagggtttgccattagctgtgacattga |
244 |
Q |
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||||||||| |||||||||||||| ||||||| ||||| || |||||||||||||||| |
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| T |
47487502 |
tgctgttacaattgttgttgttgctgttcctgaaggtttacctttagctgtgacattga |
47487560 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 34; Significance: 0.0000000005; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 212 - 273
Target Start/End: Complemental strand, 39951730 - 39951669
Alignment:
| Q |
212 |
ttcctgagggtttgccattagctgtgacattgacacttgcatattcaatgaagaaaatgatg |
273 |
Q |
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|||| |||||||| ||||||||||| ||||||| ||||||| | ||||||||||||||||| |
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| T |
39951730 |
ttcccgagggtttaccattagctgtaacattgagtcttgcatttgcaatgaagaaaatgatg |
39951669 |
T |
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