View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4201_high_6 (Length: 332)
Name: NF4201_high_6
Description: NF4201
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4201_high_6 |
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Alignment Details
Target: chr5 (Bit Score: 283; Significance: 1e-158; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 283; E-Value: 1e-158
Query Start/End: Original strand, 18 - 316
Target Start/End: Original strand, 4720837 - 4721135
Alignment:
| Q |
18 |
gttaaaagtgtatggcaaacttaatttgctaatatatggaccacaaatattagatttgaggttacctagtttttgattcgtagggtccattattggagaa |
117 |
Q |
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| T |
4720837 |
gttaaaagtgtatggcaaacttaatttgctaatatatggaccacaaatattatatttgaggttacctagtttttgattcgtagggtccattattggagaa |
4720936 |
T |
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| Q |
118 |
gttttgatcaatcttatattcttccatgtgtatagtttctatagttaattagtaagtgcactaaaccaaactgcgcatgcttgctcttgatgtatacgtc |
217 |
Q |
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||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||||||||||||||||||||||| |
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| T |
4720937 |
gttttgatcaatcctatattcttccatgtgtatagtttctatagttaattagtaagtgcactaaacccacctgcgcatgcttgctcttgatgtatacgtc |
4721036 |
T |
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| Q |
218 |
aattgcaggttgaacagcaaagatgaagatttggcaatcatatcctttttaataaaaacaatgttcctagagatagaggcagcgattttatgatttcat |
316 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4721037 |
aattgcaggttgaacagcaaagatgaagatttggcaatcatatcctttttaataaaaacaatgttcctagagatagaggcagcgattttatgatttcat |
4721135 |
T |
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