View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF4201_low_5 (Length: 363)
Name: NF4201_low_5
Description: NF4201
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4201_low_5 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 231; Significance: 1e-127; HSPs: 16)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 231; E-Value: 1e-127
Query Start/End: Original strand, 91 - 345
Target Start/End: Complemental strand, 23415986 - 23415732
Alignment:
| Q |
91 |
gaaacatacaagatctacatattcaaagttctgaaacaagttcacccagacattggtatctcaagcaaagccatgggaataatgaacagtttcatcaatg |
190 |
Q |
| |
|
|||||||||||||||||||| |||||||||||||| || ||||||||||||||||||||||||||||| |||||||| || ||||||||||||||||||| |
|
|
| T |
23415986 |
gaaacatacaagatctacatcttcaaagttctgaagcaggttcacccagacattggtatctcaagcaaggccatgggtatcatgaacagtttcatcaatg |
23415887 |
T |
|
| Q |
191 |
atatcttcgagaagcttgctcaagaatcatccagacttgctcgttacaacaagaagccaacaatcacttcaagggaaattcagactgcagtcagacttgt |
290 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
23415886 |
atatcttcgagaagcttgctcaagaatcatccagacttgctcgttacaacaagaagccaacaatcacttcaagggaaattcagactgcagtcagacttgt |
23415787 |
T |
|
| Q |
291 |
tcttcctggtgaattggccaagcatgctgtttctgagggtaccaaggctgtgact |
345 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
23415786 |
tcttcctggtgaattggccaagcatgctgtttctgagggtaccaaggctgtgact |
23415732 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 226; E-Value: 1e-124
Query Start/End: Original strand, 91 - 344
Target Start/End: Original strand, 24307224 - 24307477
Alignment:
| Q |
91 |
gaaacatacaagatctacatattcaaagttctgaaacaagttcacccagacattggtatctcaagcaaagccatgggaataatgaacagtttcatcaatg |
190 |
Q |
| |
|
||||||||||||||||| || ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
24307224 |
gaaacatacaagatctatatcttcaaggttctgaaacaagttcacccagacattggtatctcaagcaaagccatgggaataatgaacagtttcatcaatg |
24307323 |
T |
|
| Q |
191 |
atatcttcgagaagcttgctcaagaatcatccagacttgctcgttacaacaagaagccaacaatcacttcaagggaaattcagactgcagtcagacttgt |
290 |
Q |
| |
|
||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
|
|
| T |
24307324 |
atatcttcgagaaactagctcaagaatcatccagacttgctcgttacaacaagaagccaacaatcacttcaagggaaattcagactgctgtcagacttgt |
24307423 |
T |
|
| Q |
291 |
tcttcctggtgaattggccaagcatgctgtttctgagggtaccaaggctgtgac |
344 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
|
|
| T |
24307424 |
tcttcctggtgaattggccaagcatgctgtttctgagggtaccaaagctgtgac |
24307477 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 223; E-Value: 1e-123
Query Start/End: Original strand, 87 - 345
Target Start/End: Complemental strand, 23408821 - 23408563
Alignment:
| Q |
87 |
tgtagaaacatacaagatctacatattcaaagttctgaaacaagttcacccagacattggtatctcaagcaaagccatgggaataatgaacagtttcatc |
186 |
Q |
| |
|
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| ||||| || ||||||||||||||| |
|
|
| T |
23408821 |
tgtagaaacatacaagatctacatcttcaaagttctgaaacaagttcacccagacattggtatctcaagcaaagcgatgggtatcatgaacagtttcatc |
23408722 |
T |
|
| Q |
187 |
aatgatatcttcgagaagcttgctcaagaatcatccagacttgctcgttacaacaagaagccaacaatcacttcaagggaaattcagactgcagtcagac |
286 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||| |
|
|
| T |
23408721 |
aatgatatcttcgagaagcttgctcaagaatcatccagacttgctcgttacaacaagaagccaacaatcacttcaagggaaattcagaccgcggtcagac |
23408622 |
T |
|
| Q |
287 |
ttgttcttcctggtgaattggccaagcatgctgtttctgagggtaccaaggctgtgact |
345 |
Q |
| |
|
||||||||||||| |||||||||||||||||||||||||| || ||||||||||||||| |
|
|
| T |
23408621 |
ttgttcttcctggagaattggccaagcatgctgtttctgaaggcaccaaggctgtgact |
23408563 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 222; E-Value: 1e-122
Query Start/End: Original strand, 87 - 344
Target Start/End: Complemental strand, 23453653 - 23453396
Alignment:
| Q |
87 |
tgtagaaacatacaagatctacatattcaaagttctgaaacaagttcacccagacattggtatctcaagcaaagccatgggaataatgaacagtttcatc |
186 |
Q |
| |
|
|||||||||||||||||||||||| |||||||||||||| || ||||||||||||||||||||||||||||| |||||||| || ||||||||||||||| |
|
|
| T |
23453653 |
tgtagaaacatacaagatctacatcttcaaagttctgaatcatgttcacccagacattggtatctcaagcaaggccatgggtatcatgaacagtttcatc |
23453554 |
T |
|
| Q |
187 |
aatgatatcttcgagaagcttgctcaagaatcatccagacttgctcgttacaacaagaagccaacaatcacttcaagggaaattcagactgcagtcagac |
286 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |
|
|
| T |
23453553 |
aatgatatcttcgagaagcttgctcaagaatcatccagacttgctcgttacaacaagaagccaacaatcacttcaagggaaattcagactgcagtcagtc |
23453454 |
T |
|
| Q |
287 |
ttgttcttcctggtgaattggccaagcatgctgtttctgagggtaccaaggctgtgac |
344 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| || |||||||||||||| |
|
|
| T |
23453453 |
ttgttcttcctggtgaattggccaagcatgctgtttctgaaggcaccaaggctgtgac |
23453396 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 215; E-Value: 1e-118
Query Start/End: Original strand, 91 - 345
Target Start/End: Original strand, 23868733 - 23868987
Alignment:
| Q |
91 |
gaaacatacaagatctacatattcaaagttctgaaacaagttcacccagacattggtatctcaagcaaagccatgggaataatgaacagtttcatcaatg |
190 |
Q |
| |
|
|||||||||||||||||||| |||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
23868733 |
gaaacatacaagatctacatcttcaaagttctgaagcaggttcacccagacattggtatctcaagcaaagccatgggaataatgaacagtttcatcaatg |
23868832 |
T |
|
| Q |
191 |
atatcttcgagaagcttgctcaagaatcatccagacttgctcgttacaacaagaagccaacaatcacttcaagggaaattcagactgcagtcagacttgt |
290 |
Q |
| |
|
||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
|
|
| T |
23868833 |
atatcttcgagaaacttgctcaagaatcatccagacttgctcgttacaacaagaagccaacaatcacttcaagggaaattcagactgctgtcagacttgt |
23868932 |
T |
|
| Q |
291 |
tcttcctggtgaattggccaagcatgctgtttctgagggtaccaaggctgtgact |
345 |
Q |
| |
|
||||||||||||||||||||| |||||||||||||| || || || ||||||||| |
|
|
| T |
23868933 |
tcttcctggtgaattggccaaacatgctgtttctgaaggaacaaaagctgtgact |
23868987 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 214; E-Value: 1e-117
Query Start/End: Original strand, 87 - 344
Target Start/End: Original strand, 23402071 - 23402328
Alignment:
| Q |
87 |
tgtagaaacatacaagatctacatattcaaagttctgaaacaagttcacccagacattggtatctcaagcaaagccatgggaataatgaacagtttcatc |
186 |
Q |
| |
|
|||||||||||||||||||||||| |||||||||||||| || ||||||||||||||||||||||||||||| |||||||| || ||||||||||||||| |
|
|
| T |
23402071 |
tgtagaaacatacaagatctacatcttcaaagttctgaagcaggttcacccagacattggtatctcaagcaaggccatgggtatcatgaacagtttcatc |
23402170 |
T |
|
| Q |
187 |
aatgatatcttcgagaagcttgctcaagaatcatccagacttgctcgttacaacaagaagccaacaatcacttcaagggaaattcagactgcagtcagac |
286 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |
|
|
| T |
23402171 |
aatgatatcttcgagaagcttgctcaagaatcatccagacttgctcgttacaacaagaagccaacaatcacttcaagggaaattcagactgcagtcaggc |
23402270 |
T |
|
| Q |
287 |
ttgttcttcctggtgaattggccaagcatgctgtttctgagggtaccaaggctgtgac |
344 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| || ||||| ||||| |||||||| |
|
|
| T |
23402271 |
ttgttcttcctggtgaattggccaagcatgctgtctcagagggaaccaaagctgtgac |
23402328 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #7
Raw Score: 214; E-Value: 1e-117
Query Start/End: Original strand, 91 - 344
Target Start/End: Original strand, 23885828 - 23886081
Alignment:
| Q |
91 |
gaaacatacaagatctacatattcaaagttctgaaacaagttcacccagacattggtatctcaagcaaagccatgggaataatgaacagtttcatcaatg |
190 |
Q |
| |
|
|||||||||||||||||||| |||||||||||||| || ||||||||||||||||||||||||||||| |||||||| || ||||||||||||||||||| |
|
|
| T |
23885828 |
gaaacatacaagatctacatcttcaaagttctgaagcaggttcacccagacattggtatctcaagcaaggccatgggtatcatgaacagtttcatcaatg |
23885927 |
T |
|
| Q |
191 |
atatcttcgagaagcttgctcaagaatcatccagacttgctcgttacaacaagaagccaacaatcacttcaagggaaattcagactgcagtcagacttgt |
290 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
|
|
| T |
23885928 |
atatcttcgagaagcttgctcaagaatcatccagacttgctcgttacaacaagaagccaacaatcacttcaagggaaattcagactgcagtcaggcttgt |
23886027 |
T |
|
| Q |
291 |
tcttcctggtgaattggccaagcatgctgtttctgagggtaccaaggctgtgac |
344 |
Q |
| |
|
|||||||||||||||||||||||||||||| |||||||| ||||| |||||||| |
|
|
| T |
23886028 |
tcttcctggtgaattggccaagcatgctgtctctgagggaaccaaagctgtgac |
23886081 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #8
Raw Score: 207; E-Value: 1e-113
Query Start/End: Original strand, 91 - 341
Target Start/End: Original strand, 26832736 - 26832986
Alignment:
| Q |
91 |
gaaacatacaagatctacatattcaaagttctgaaacaagttcacccagacattggtatctcaagcaaagccatgggaataatgaacagtttcatcaatg |
190 |
Q |
| |
|
|||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||||||||||||||| |
|
|
| T |
26832736 |
gaaacatacaagatctacatcttcaaggttctgaaacaagttcacccagacattggtatctcaagcaaagccatgggtatcatgaacagtttcatcaatg |
26832835 |
T |
|
| Q |
191 |
atatcttcgagaagcttgctcaagaatcatccagacttgctcgttacaacaagaagccaacaatcacttcaagggaaattcagactgcagtcagacttgt |
290 |
Q |
| |
|
||||||||||||| || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||| ||||| |
|
|
| T |
26832836 |
atatcttcgagaaactcgctcaagaatcatccagacttgctcgttacaacaagaagccaacaatcacttcaagggaaattcagaccgcggtcaggcttgt |
26832935 |
T |
|
| Q |
291 |
tcttcctggtgaattggccaagcatgctgtttctgagggtaccaaggctgt |
341 |
Q |
| |
|
||| || |||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
26832936 |
tctgcccggtgaattggccaagcatgctgtttctgagggtaccaaggctgt |
26832986 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #9
Raw Score: 203; E-Value: 1e-111
Query Start/End: Original strand, 91 - 341
Target Start/End: Original strand, 26434025 - 26434275
Alignment:
| Q |
91 |
gaaacatacaagatctacatattcaaagttctgaaacaagttcacccagacattggtatctcaagcaaagccatgggaataatgaacagtttcatcaatg |
190 |
Q |
| |
|
|||||||||||||||||||| ||||| ||||||||||||||||| |||||||||||||||||||||||||||||||| || ||||||||||||||||||| |
|
|
| T |
26434025 |
gaaacatacaagatctacatcttcaaggttctgaaacaagttcatccagacattggtatctcaagcaaagccatgggtatcatgaacagtttcatcaatg |
26434124 |
T |
|
| Q |
191 |
atatcttcgagaagcttgctcaagaatcatccagacttgctcgttacaacaagaagccaacaatcacttcaagggaaattcagactgcagtcagacttgt |
290 |
Q |
| |
|
||||||||||||| || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||| ||||| |
|
|
| T |
26434125 |
atatcttcgagaaactcgctcaagaatcatccagacttgctcgttacaacaagaagccaacaatcacttcaagggaaattcagaccgcggtcaggcttgt |
26434224 |
T |
|
| Q |
291 |
tcttcctggtgaattggccaagcatgctgtttctgagggtaccaaggctgt |
341 |
Q |
| |
|
||| || |||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
26434225 |
tctgcccggtgaattggccaagcatgctgtttctgagggtaccaaggctgt |
26434275 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #10
Raw Score: 195; E-Value: 1e-106
Query Start/End: Original strand, 91 - 341
Target Start/End: Original strand, 26435805 - 26436055
Alignment:
| Q |
91 |
gaaacatacaagatctacatattcaaagttctgaaacaagttcacccagacattggtatctcaagcaaagccatgggaataatgaacagtttcatcaatg |
190 |
Q |
| |
|
|||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||||||||||||||| |
|
|
| T |
26435805 |
gaaacatacaagatctacatcttcaaggttctgaaacaagttcacccagacattggtatctcaagcaaagccatgggtatcatgaacagtttcatcaatg |
26435904 |
T |
|
| Q |
191 |
atatcttcgagaagcttgctcaagaatcatccagacttgctcgttacaacaagaagccaacaatcacttcaagggaaattcagactgcagtcagacttgt |
290 |
Q |
| |
|
||||||||||||| || |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||| ||||| |
|
|
| T |
26435905 |
atatcttcgagaaactcactcaagaatcttccagacttgctcgttacaacaagaagccaacaatcacttcaagggaaattcagaccgcggtcaggcttgt |
26436004 |
T |
|
| Q |
291 |
tcttcctggtgaattggccaagcatgctgtttctgagggtaccaaggctgt |
341 |
Q |
| |
|
||| || ||||||||||||||||||| |||||||||||||||||||||||| |
|
|
| T |
26436005 |
tctgcccggtgaattggccaagcatgatgtttctgagggtaccaaggctgt |
26436055 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #11
Raw Score: 159; E-Value: 1e-84
Query Start/End: Original strand, 91 - 341
Target Start/End: Complemental strand, 34662318 - 34662068
Alignment:
| Q |
91 |
gaaacatacaagatctacatattcaaagttctgaaacaagttcacccagacattggtatctcaagcaaagccatgggaataatgaacagtttcatcaatg |
190 |
Q |
| |
|
||||| |||||||||||||| ||||| |||||||||||||||||||| ||||||||||||||||||||||||||||| || ||||||||||||||||||| |
|
|
| T |
34662318 |
gaaacctacaagatctacatcttcaaggttctgaaacaagttcaccctgacattggtatctcaagcaaagccatgggtattatgaacagtttcatcaatg |
34662219 |
T |
|
| Q |
191 |
atatcttcgagaagcttgctcaagaatcatccagacttgctcgttacaacaagaagccaacaatcacttcaagggaaattcagactgcagtcagacttgt |
290 |
Q |
| |
|
|||||||||||||||| ||||||||||| ||||||||||| | || ||||||||||| || || ||||| ||||||||||||||||| || || ||||| |
|
|
| T |
34662218 |
atatcttcgagaagctcgctcaagaatcttccagacttgcaaggtataacaagaagccgacgataacttcgagggaaattcagactgctgttaggcttgt |
34662119 |
T |
|
| Q |
291 |
tcttcctggtgaattggccaagcatgctgtttctgagggtaccaaggctgt |
341 |
Q |
| |
|
||||||||| |||||||| ||||||||||| |||||||||||||| ||||| |
|
|
| T |
34662118 |
tcttcctggagaattggctaagcatgctgtgtctgagggtaccaaagctgt |
34662068 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #12
Raw Score: 93; E-Value: 3e-45
Query Start/End: Original strand, 180 - 312
Target Start/End: Complemental strand, 23451920 - 23451788
Alignment:
| Q |
180 |
tttcatcaatgatatcttcgagaagcttgctcaagaatcatccagacttgctcgttacaacaagaagccaacaatcacttcaagggaaattcagactgca |
279 |
Q |
| |
|
||||||||| |||||||| |||||||| |||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||| |
|
|
| T |
23451920 |
tttcatcaacgatatctttgagaagctcgctcaagaatactccagacttgctcgctacaacaagaagccaacaatcacttcaagggaaattcagaccgca |
23451821 |
T |
|
| Q |
280 |
gtcagacttgttcttcctggtgaattggccaag |
312 |
Q |
| |
|
||||| |||||||| || ||||||||||||||| |
|
|
| T |
23451820 |
gtcaggcttgttctgcccggtgaattggccaag |
23451788 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #13
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 11 - 53
Target Start/End: Complemental strand, 23416063 - 23416021
Alignment:
| Q |
11 |
caaaggcagggaagaagctaccaaaggaaggtggttccgctgc |
53 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| ||||| |
|
|
| T |
23416063 |
caaaggcagggaagaagctaccaaaggaaggtggttcagctgc |
23416021 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #14
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 11 - 53
Target Start/End: Original strand, 24307144 - 24307186
Alignment:
| Q |
11 |
caaaggcagggaagaagctaccaaaggaaggtggttccgctgc |
53 |
Q |
| |
|
|||||||||| |||||||||||||||||||||||||||||||| |
|
|
| T |
24307144 |
caaaggcaggaaagaagctaccaaaggaaggtggttccgctgc |
24307186 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #15
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 11 - 56
Target Start/End: Original strand, 23401995 - 23402040
Alignment:
| Q |
11 |
caaaggcagggaagaagctaccaaaggaaggtggttccgctgcagg |
56 |
Q |
| |
|
|||||||||| |||||||||||||||||||||||||| || ||||| |
|
|
| T |
23401995 |
caaaggcaggaaagaagctaccaaaggaaggtggttctgcagcagg |
23402040 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #16
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 13 - 56
Target Start/End: Complemental strand, 23408895 - 23408852
Alignment:
| Q |
13 |
aaggcagggaagaagctaccaaaggaaggtggttccgctgcagg |
56 |
Q |
| |
|
|||||||| |||||||||||||||||||||||||| || ||||| |
|
|
| T |
23408895 |
aaggcaggaaagaagctaccaaaggaaggtggttctgcagcagg |
23408852 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 107; Significance: 1e-53; HSPs: 6)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 107; E-Value: 1e-53
Query Start/End: Original strand, 91 - 341
Target Start/End: Original strand, 41670401 - 41670651
Alignment:
| Q |
91 |
gaaacatacaagatctacatattcaaagttctgaaacaagttcacccagacattggtatctcaagcaaagccatgggaataatgaacagtttcatcaatg |
190 |
Q |
| |
|
||||| |||||||||||||| ||||| ||||| || || ||||| || |||||||||||||||||||| || ||||| || |||||||| |||||||||| |
|
|
| T |
41670401 |
gaaacctacaagatctacatcttcaaggttctcaagcaggttcatcctgacattggtatctcaagcaaggctatggggatcatgaacagcttcatcaatg |
41670500 |
T |
|
| Q |
191 |
atatcttcgagaagcttgctcaagaatcatccagacttgctcgttacaacaagaagccaacaatcacttcaagggaaattcagactgcagtcagacttgt |
290 |
Q |
| |
|
||||||| |||||||| ||||| ||||| ||||||||||| | |||||||||||||| ||||||||||| |||| || |||||||| || | ||||| |
|
|
| T |
41670501 |
atatctttgagaagctcgctcaggaatcttccagacttgcgaggtacaacaagaagcctacaatcacttctcgggagatacagactgctgttcgtcttgt |
41670600 |
T |
|
| Q |
291 |
tcttcctggtgaattggccaagcatgctgtttctgagggtaccaaggctgt |
341 |
Q |
| |
|
||| || |||||| | || ||||||||||| |||||||| ||||||||||| |
|
|
| T |
41670601 |
tctccccggtgaacttgctaagcatgctgtctctgagggaaccaaggctgt |
41670651 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 86; E-Value: 5e-41
Query Start/End: Original strand, 239 - 344
Target Start/End: Original strand, 33216594 - 33216699
Alignment:
| Q |
239 |
acaagaagccaacaatcacttcaagggaaattcagactgcagtcagacttgttcttcctggtgaattggccaagcatgctgtttctgagggtaccaaggc |
338 |
Q |
| |
|
|||||||||||||||||||||||||| ||||||| ||||| |||||||||||||||| ||||||||||||||| |||||||||||||||||||||||||| |
|
|
| T |
33216594 |
acaagaagccaacaatcacttcaaggaaaattcaaactgctgtcagacttgttcttcttggtgaattggccaaacatgctgtttctgagggtaccaaggc |
33216693 |
T |
|
| Q |
339 |
tgtgac |
344 |
Q |
| |
|
|||||| |
|
|
| T |
33216694 |
tgtgac |
33216699 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 84; E-Value: 8e-40
Query Start/End: Original strand, 88 - 335
Target Start/End: Original strand, 40795767 - 40796014
Alignment:
| Q |
88 |
gtagaaacatacaagatctacatattcaaagttctgaaacaagttcacccagacattggtatctcaagcaaagccatgggaataatgaacagtttcatca |
187 |
Q |
| |
|
|||||||| |||||||||||||| ||||| ||||| || || ||||| || |||||||| ||||| ||||| || ||||| || |||||||||||||||| |
|
|
| T |
40795767 |
gtagaaacctacaagatctacatcttcaaggttctcaagcaggttcatcctgacattggaatctccagcaaggctatggggatcatgaacagtttcatca |
40795866 |
T |
|
| Q |
188 |
atgatatcttcgagaagcttgctcaagaatcatccagacttgctcgttacaacaagaagccaacaatcacttcaagggaaattcagactgcagtcagact |
287 |
Q |
| |
|
|||| ||||| |||||||| ||||| |||||||||||||| ||||| ||||||||||| || || ||||| || | || ||||||||||| || | || |
|
|
| T |
40795867 |
atgacatctttgagaagctcgctcaggaatcatccagactcgctcgctacaacaagaaacctaccatcacctctcgtgagattcagactgctgttcgtct |
40795966 |
T |
|
| Q |
288 |
tgttcttcctggtgaattggccaagcatgctgtttctgagggtaccaa |
335 |
Q |
| |
|
|||||||| || ||| | |||||||| ||||| || ||||| ||||| |
|
|
| T |
40795967 |
cgttcttcccggcgaacttgccaagcacgctgtctccgagggaaccaa |
40796014 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 91 - 341
Target Start/End: Original strand, 29391467 - 29391717
Alignment:
| Q |
91 |
gaaacatacaagatctacatattcaaagttctgaaacaagttcacccagacattggtatctcaagcaaagccatgggaataatgaacagtttcatcaatg |
190 |
Q |
| |
|
||||| || ||||| ||||| ||||| ||||| ||||| ||||| || || || ||||| || |||||| ||||| || ||||||||||||||||||| |
|
|
| T |
29391467 |
gaaacctataagatttacatcttcaaggttctcaaacaggttcatcctgatataggtatttcttccaaagctatggggattatgaacagtttcatcaatg |
29391566 |
T |
|
| Q |
191 |
atatcttcgagaagcttgctcaagaatcatccagacttgctcgttacaacaagaagccaacaatcacttcaagggaaattcagactgcagtcagacttgt |
290 |
Q |
| |
|
||||||| ||||| || ||||| ||| | || ||| | ||||||||||||||||| || || || || || ||||| ||||| || || || | | || |
|
|
| T |
29391567 |
atatctttgagaaactcgctcaggaagcttctagattggctcgttacaacaagaaaccgacgattacgtcgagggagattcaaacggctgtgcgtttggt |
29391666 |
T |
|
| Q |
291 |
tcttcctggtgaattggccaagcatgctgtttctgagggtaccaaggctgt |
341 |
Q |
| |
|
|||||| ||||||||||| || ||||||||||| || || ||||||||||| |
|
|
| T |
29391667 |
tcttcccggtgaattggcgaaacatgctgtttccgaaggaaccaaggctgt |
29391717 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 286 - 344
Target Start/End: Original strand, 45576399 - 45576457
Alignment:
| Q |
286 |
cttgttcttcctggtgaattggccaagcatgctgtttctgagggtaccaaggctgtgac |
344 |
Q |
| |
|
|||||||| || | ||||||||| ||||||| |||||||||||||||||| |||||||| |
|
|
| T |
45576399 |
cttgttctgcccgatgaattggctaagcatgttgtttctgagggtaccaaagctgtgac |
45576457 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 183 - 219
Target Start/End: Original strand, 33216558 - 33216594
Alignment:
| Q |
183 |
catcaatgatatcttcgagaagcttgctcaagaatca |
219 |
Q |
| |
|
||||||||||||||||| ||||||||||||||||||| |
|
|
| T |
33216558 |
catcaatgatatcttcgtgaagcttgctcaagaatca |
33216594 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 78; Significance: 3e-36; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 239 - 344
Target Start/End: Original strand, 47317431 - 47317536
Alignment:
| Q |
239 |
acaagaagccaacaatcacttcaagggaaattcagactgcagtcagacttgttcttcctggtgaattggccaagcatgctgtttctgagggtaccaaggc |
338 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| |||| ||||||||| |||||||||||||||||||||| |||| |||||||||||||||||| || |
|
|
| T |
47317431 |
acaagaagccaacaatcacttcaagggaaattcaaactgttgtcagacttattcttcctggtgaattggccaaacatgttgtttctgagggtaccaaagc |
47317530 |
T |
|
| Q |
339 |
tgtgac |
344 |
Q |
| |
|
|||||| |
|
|
| T |
47317531 |
tgtgac |
47317536 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 71; E-Value: 4e-32
Query Start/End: Original strand, 91 - 341
Target Start/End: Complemental strand, 40180547 - 40180297
Alignment:
| Q |
91 |
gaaacatacaagatctacatattcaaagttctgaaacaagttcacccagacattggtatctcaagcaaagccatgggaataatgaacagtttcatcaatg |
190 |
Q |
| |
|
||||| |||||||| ||||| ||||| ||||||||||| ||||| || || || ||| | |||||||| || |||||||| |||||||||||||| || | |
|
|
| T |
40180547 |
gaaacctacaagatatacatcttcaaggttctgaaacaggttcatcctgatatcggtgtttcaagcaaggctatgggaatcatgaacagtttcattaacg |
40180448 |
T |
|
| Q |
191 |
atatcttcgagaagcttgctcaagaatcatccagacttgctcgttacaacaagaagccaacaatcacttcaagggaaattcagactgcagtcagacttgt |
290 |
Q |
| |
|
||||||| ||||| || ||||| ||||| || | | ||| | || ||||||||||| || || ||||| ||||| ||||| ||||| || ||| | || |
|
|
| T |
40180447 |
atatctttgagaaactcgctcaggaatcgtctcgtttggctaggtataacaagaagccgacgattacttctagggagattcaaactgctgttagattggt |
40180348 |
T |
|
| Q |
291 |
tcttcctggtgaattggccaagcatgctgtttctgagggtaccaaggctgt |
341 |
Q |
| |
|
||||||||| |||||||| || |||||||||||||| || || |||||||| |
|
|
| T |
40180347 |
tcttcctggagaattggctaaacatgctgtttctgaagggactaaggctgt |
40180297 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 183 - 219
Target Start/End: Original strand, 47317395 - 47317431
Alignment:
| Q |
183 |
catcaatgatatcttcgagaagcttgctcaagaatca |
219 |
Q |
| |
|
||||||||||||||||| ||||||||||||||||||| |
|
|
| T |
47317395 |
catcaatgatatcttcgtgaagcttgctcaagaatca |
47317431 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 274 - 332
Target Start/End: Original strand, 14715433 - 14715491
Alignment:
| Q |
274 |
actgcagtcagacttgttcttcctggtgaattggccaagcatgctgtttctgagggtac |
332 |
Q |
| |
|
|||||||| ||||||||||||||||| |||||||||||||||| ||| ||||||||||| |
|
|
| T |
14715433 |
actgcagtgagacttgttcttcctggagaattggccaagcatgttgtgtctgagggtac |
14715491 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 91 - 216
Target Start/End: Original strand, 29684701 - 29684826
Alignment:
| Q |
91 |
gaaacatacaagatctacatattcaaagttctgaaacaagttcacccagacattggtatctcaagcaaagccatgggaataatgaacagtttcatcaatg |
190 |
Q |
| |
|
||||| |||||||| || |||||||| ||||| ||||||||||| || | ||||||| | ||||| ||||| |||||| | || ||||||||| | || | |
|
|
| T |
29684701 |
gaaacctacaagatatatatattcaaggttctcaaacaagttcatcctgccattggtgtttcaagtaaagctatgggagttattaacagtttcgtgaacg |
29684800 |
T |
|
| Q |
191 |
atatcttcgagaagcttgctcaagaa |
216 |
Q |
| |
|
||||||| |||| || ||||||||| |
|
|
| T |
29684801 |
atatctttaagaaactcgctcaagaa |
29684826 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University