View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4201_low_8 (Length: 307)
Name: NF4201_low_8
Description: NF4201
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4201_low_8 |
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Alignment Details
Target: chr8 (Bit Score: 293; Significance: 1e-164; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 293; E-Value: 1e-164
Query Start/End: Original strand, 1 - 297
Target Start/End: Complemental strand, 41778181 - 41777885
Alignment:
| Q |
1 |
tctttgctcattgctttcatttgttgacccttggttctatggattacttaacctattgtcgcaatcttcataatcttagaaggcactggtgtgatttggg |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41778181 |
tctttgctcattgctttcatttgttgacccttggttctatggattacttaacctattgtcgcaatcttcataatcttagaaggcactggtgtgatttggg |
41778082 |
T |
|
| Q |
101 |
tgccatcaaagagttgtaagctatgttcaacacttgactctaaaacactggtttctgcatcaactgataatccgttgaagatttgggactgggatctcaa |
200 |
Q |
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|||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41778081 |
tgccatcaaagagttgtaagttatgttcaacacttgactctaaaacactggtttctgcatcaactgataatccgttgaagatttgggactgggatctcaa |
41777982 |
T |
|
| Q |
201 |
taaaacatcgcctgtgggtcaaccaactagtgtttgtagcttaaccttgtcagagcatactaatgagaaggtttggtgttaaatttcatagtattat |
297 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41777981 |
taaaacatcgcctgtgggtcaaccaactagtgtttgtagcttaaccttgtcagagcatactaatgagaaggtttggtgttaaatttcatagtattat |
41777885 |
T |
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Target: chr5 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 136 - 188
Target Start/End: Original strand, 2309132 - 2309184
Alignment:
| Q |
136 |
gactctaaaacactggtttctgcatcaactgataatccgttgaagatttggga |
188 |
Q |
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|||||| ||||||| ||||||||||| ||||||||| | |||||||| ||||| |
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| T |
2309132 |
gactctgaaacacttgtttctgcatctactgataattcattgaagatctggga |
2309184 |
T |
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