View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4201_low_9 (Length: 273)
Name: NF4201_low_9
Description: NF4201
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4201_low_9 |
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Alignment Details
Target: chr8 (Bit Score: 214; Significance: 1e-117; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 214; E-Value: 1e-117
Query Start/End: Original strand, 11 - 258
Target Start/End: Original strand, 32550353 - 32550600
Alignment:
| Q |
11 |
caaaggcaattctattttctaaaaattggaacatttttatatccgtagacgaaattgacctcacaaaactcacacacacaaagttcccagtttgaatatc |
110 |
Q |
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| T |
32550353 |
caaaggcaattctattttctaaaaattggaacatttttatatccgtagacgaaattgacctcacaaaactcacacacacaaagttcccagtttgaatatc |
32550452 |
T |
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| Q |
111 |
agcattgtcggaagnnnnnnnnnnttgtaatatattgtgatagtcaaaaactatgaaccgaaacaagtgatttgatgattgttgaagtgcagaaaagcac |
210 |
Q |
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|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
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| T |
32550453 |
agcattgtcggaagaaaaaaaaaattgtaatatattgtgatagtcaaaaactatgaaccgaaacaagtgatttggtgattgttgaagtgcagaaaagcac |
32550552 |
T |
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| Q |
211 |
aaacctcgatacgagtaatggtgaaaatggcatgagcagtgttcttat |
258 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32550553 |
aaacctcgatacgagtaatggtgaaaatggcatgagcagtgttcttat |
32550600 |
T |
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