View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4202_high_11 (Length: 268)
Name: NF4202_high_11
Description: NF4202
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4202_high_11 |
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| [»] chr1 (2 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 226; Significance: 1e-124; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 226; E-Value: 1e-124
Query Start/End: Original strand, 7 - 268
Target Start/End: Original strand, 33777534 - 33777795
Alignment:
| Q |
7 |
tccaagaatattccaaaccacattctcattctgcaagactagatcaatagaaggaacatctggtcccattcttgaagaactaatactttgacttgcaaaa |
106 |
Q |
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| T |
33777534 |
tccaataatattccaaaccacattctcattctgcaacactagatcaatggaaggaacatctggtcccattcttgaagaactaatactttgacttgcaaaa |
33777633 |
T |
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| Q |
107 |
catgttccaaatggtgctacaggttcaacagtagaaacatttaatgctttcacaaaagcatcagcaactgctttataaattgaagactccattatagtgt |
206 |
Q |
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| T |
33777634 |
catgttccaaatggtgctacaggttcaacagtagaaacatttaatgctttcacaaaagcatcagcaacagctttatagatcgatgtttccattatagtgt |
33777733 |
T |
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| Q |
207 |
aaggattaacagtgctaattttggttccaccaaatccattttggtctatagataaaagggtt |
268 |
Q |
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| T |
33777734 |
aaggattaacagtgctaattttggttccaccaaatccattttggtctatagataaaagggtt |
33777795 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 86; E-Value: 3e-41
Query Start/End: Original strand, 99 - 268
Target Start/End: Original strand, 33767293 - 33767462
Alignment:
| Q |
99 |
ttgcaaaacatgttccaaatggtgctacaggttcaacagtagaaacatttaatgctttcacaaaagcatcagcaactgctttataaattgaagactccat |
198 |
Q |
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||||||||||||||||||||||||||||||||| |||| |||||| |||||| ||||||||||| | ||| ||||||| ||||| | |||||| |
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| T |
33767293 |
ttgcaaaacatgttccaaatggtgctacaggttgaacatcagaaactccgaatgctatcacaaaagcacaactaacagctttattgattgacgtctccat |
33767392 |
T |
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| Q |
199 |
tatagtgtaaggattaacagtgctaattttggttccaccaaatccattttggtctatagataaaagggtt |
268 |
Q |
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| T |
33767393 |
tatagtgtaaggattaaaagggctaattttggttccaccaaatccatttttgtgtatagataaaagggtt |
33767462 |
T |
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