View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4202_high_2 (Length: 491)
Name: NF4202_high_2
Description: NF4202
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4202_high_2 |
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Alignment Details
Target: chr3 (Bit Score: 235; Significance: 1e-130; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 235; E-Value: 1e-130
Query Start/End: Original strand, 65 - 407
Target Start/End: Original strand, 45130357 - 45130707
Alignment:
| Q |
65 |
tgatggagtggtgtatttatttaaaatgatgatgatga---gtaagtgactagtgtcgtgagaagtacaaa--tggtggggcaatgtggtgggtggaatt |
159 |
Q |
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| T |
45130357 |
tgatggggtggtgtatttatttaaaatgatgatgatgatgagtaagtgactagtgttgtgagaagtacaaggttggtggggcaatgtggtgggtggaatt |
45130456 |
T |
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| Q |
160 |
tgtgttttctagtctattataaatatgattacaattttaacttttttaatggcaggcctcaaatattattggtgttgaaagagatgtgac---------- |
249 |
Q |
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| T |
45130457 |
tgtgtattctagtctattataaatatgattacaattttaacttttttaatggcaggcctgaaa---tattggtgttgaaagagatgtgacagagagagag |
45130553 |
T |
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| Q |
250 |
agagagcaattaccacggtgtgctgggtcttgtctatataactattttcagcagcaaaaagataattattactgtatacttggaatacttcttcaaactc |
349 |
Q |
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| T |
45130554 |
agagagcaattaccacggtgtgctgggtcttgtctatataactattttcagcaacaaaaagataattattactgtatacttggaatacttcttcaaactc |
45130653 |
T |
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| Q |
350 |
accatgaatcaaaatatatatgtaattagtttgatgttatgaaaaagaaattagatat |
407 |
Q |
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| T |
45130654 |
accatgaatcaaa----atatgtaattcgtttgatgttatgtaaaagaaattagatat |
45130707 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 1 - 37
Target Start/End: Original strand, 45130290 - 45130326
Alignment:
| Q |
1 |
tgagatgaagaaataacatagacattgtcattgccat |
37 |
Q |
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| T |
45130290 |
tgagatgaagaaataaaatagacattgtcattgccat |
45130326 |
T |
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