View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4202_high_3 (Length: 491)
Name: NF4202_high_3
Description: NF4202
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4202_high_3 |
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Alignment Details
Target: chr1 (Bit Score: 236; Significance: 1e-130; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 236; E-Value: 1e-130
Query Start/End: Original strand, 1 - 291
Target Start/End: Original strand, 28844442 - 28844733
Alignment:
| Q |
1 |
tttgttatggactagctcgtaaaatttatcatttcctttctttcaaacacttatatatgtttataccaaaagataattcaaatttaattcaaacacatcc |
100 |
Q |
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| T |
28844442 |
tttgtgatggactagctcgtaaaatttatcatttcctttctttcaaacacttgtatatgtttataccaaaagataatttaaatttaattcaaacacatcc |
28844541 |
T |
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| Q |
101 |
ttatattatatatgtacgcatggccctcaaacatccttctcacgcacgatttagtggtgaaggaacgtgataccgctgatgtttttcatgtagctttgaa |
200 |
Q |
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| T |
28844542 |
ttatattgtataggtacgcatggccctcaaacatccttctcatgcacgatttagtggtgaaggaacatgataccgctgatgtttttcatgtagctttgaa |
28844641 |
T |
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| Q |
201 |
agttatagccatcattgagttttatcctttatagcttatcgacatgaattcagtttcat----gtctgcattttcctttaccatcatcttatctt |
291 |
Q |
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| T |
28844642 |
agttatagccatcattgagttttatcctttata---tatcgacatgaattcagtttcatgtcggtctgcattttcctttaccatcatcttatctt |
28844733 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 141; E-Value: 1e-73
Query Start/End: Original strand, 322 - 474
Target Start/End: Original strand, 28844905 - 28845057
Alignment:
| Q |
322 |
gtttcgaaatgctgttctcttatcttaaattgagcttaatacttcgagaaattagtcattcgtatataattgagtctcaaatattttgcaagaattctat |
421 |
Q |
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|||| |||||| ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
28844905 |
gttttgaaatgttgttctcttgtcttaaattgagcttaatacttcgagaaattagtcattcgtatataattgagtctcaaatattttgcaagaattctat |
28845004 |
T |
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| Q |
422 |
cgcagaccaatatgtatgaaagatctgcagagagatgtaggcacattaaattg |
474 |
Q |
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| T |
28845005 |
cgcagaccaatatgtatgaaagatctgcagagagatgtaggcacattaaattg |
28845057 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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