View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4202_high_4 (Length: 458)
Name: NF4202_high_4
Description: NF4202
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4202_high_4 |
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Alignment Details
Target: chr4 (Bit Score: 368; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 368; E-Value: 0
Query Start/End: Original strand, 55 - 442
Target Start/End: Original strand, 30714931 - 30715318
Alignment:
| Q |
55 |
agagcaatttaaggataaaactacatgtgagtcattttgcaatacctgagagcaattttggaagtctaaagagcaactttcatcaacattaatcctagta |
154 |
Q |
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| T |
30714931 |
agagcaatttaaggataaaactacatgtgagtcattttgcaatacctgagagcaattttggaagtctaaagagcaactttcatcaacattaatcctagta |
30715030 |
T |
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| Q |
155 |
ttttgaacttcataataaagcccaatagttcaaatggagcccaatagatccctcaaaacccaacagcagacgacagttaatttttcaaactaaccaacaa |
254 |
Q |
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| T |
30715031 |
ttttgaacttcataataaagcccaatagttcaaatggagcccaatagatccctcaaaacccaacagcagacgatcgttaatttttcaaactaaccaacaa |
30715130 |
T |
|
| Q |
255 |
ctgcacccttagaagagaagagattatcttaagattataacatacaaagttgttgagaacaaattaaagcaaatcaaacatgacttggacacaccgtcaa |
354 |
Q |
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||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
30715131 |
ctgcacccttagaagagaagagattatcttaagattacaacatacaaagctgttgagaacaaattaaagcaaatcaaacatgacttggacacaccgtcaa |
30715230 |
T |
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| Q |
355 |
tctttatctgaatctgcttcatattatcctgccactgcccaaaagcccaaacatcataatagaattccaaaacaaaagttatcagaag |
442 |
Q |
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|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
30715231 |
tcttcatctgaatctgcttcatattatcctgccactgcccaaaagcccaaacatcataatagaattccaaaacaaaagttatcagaag |
30715318 |
T |
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