View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4202_high_9 (Length: 314)

Name: NF4202_high_9
Description: NF4202
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4202_high_9
NF4202_high_9
[»] chr2 (1 HSPs)
chr2 (6-300)||(42967477-42967767)


Alignment Details
Target: chr2 (Bit Score: 245; Significance: 1e-136; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 245; E-Value: 1e-136
Query Start/End: Original strand, 6 - 300
Target Start/End: Original strand, 42967477 - 42967767
Alignment:
Q  6 ctcaaagtctaaagttcgattctactcataactaatttagatgggttaatattttaatgagcgtttaaatttatagattgtgtacatccatttccagtag 105  Q
    |||||||||||| ||||||||||   || ||||||||||||||||||||||||||||  ||| ||||||||||||||||||| ||||||||||| |||||    
T  42967477 ctcaaagtctaaggttcgattct---cagaactaatttagatgggttaatattttaaccagcttttaaatttatagattgtgcacatccatttc-agtag 42967572  T
Q  106 catcaaatctacaaacagaaaaggctcccaatggatgcacacactctagtggtggctctgtcacttgatacacacaatctaatgctctctatcaactcaa 205  Q
    ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  42967573 catcaaatctacaaagagaaaaggctcccaatggatgcacacactctagtggtggctctgtcacttgatacacacaatctaatgctctctatcaactcaa 42967672  T
Q  206 ggtcaaattcagtcctttcacacccagatagatcccttcttttgtggatacaatgcaaccacaagcagaagtgagtaattgttcatcaccggttc 300  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  42967673 ggtcaaattcagtcctttcacacccagatagatcccttcttttgtggatacaatgcaaccacaagcagaagtgagtaattgttcatcaccggttc 42967767  T

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