View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4202_low_14 (Length: 201)

Name: NF4202_low_14
Description: NF4202
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4202_low_14
NF4202_low_14
[»] chr4 (15 HSPs)
chr4 (9-193)||(12230807-12230991)
chr4 (74-193)||(13268018-13268137)
chr4 (80-193)||(19727534-19727647)
chr4 (74-186)||(13559361-13559473)
chr4 (74-193)||(18554716-18554830)
chr4 (79-193)||(17419480-17419594)
chr4 (72-193)||(15870940-15871061)
chr4 (72-193)||(15888515-15888636)
chr4 (16-94)||(8808812-8808890)
chr4 (27-94)||(16282913-16282980)
chr4 (16-94)||(11558510-11558588)
chr4 (84-116)||(9886997-9887029)
chr4 (74-188)||(13235237-13235341)
chr4 (82-116)||(20872219-20872253)
chr4 (71-120)||(30275168-30275217)
[»] chr3 (15 HSPs)
chr3 (9-193)||(19186781-19186965)
chr3 (72-193)||(21977104-21977225)
chr3 (72-193)||(21999535-21999656)
chr3 (72-191)||(22161732-22161851)
chr3 (74-186)||(10341062-10341174)
chr3 (74-167)||(10302744-10302837)
chr3 (72-193)||(16357814-16357933)
chr3 (8-94)||(17793443-17793529)
chr3 (8-94)||(19101883-19101969)
chr3 (9-94)||(5941664-5941749)
chr3 (72-188)||(16928556-16928670)
chr3 (15-86)||(21100629-21100700)
chr3 (49-94)||(15958242-15958287)
chr3 (71-112)||(21028871-21028912)
chr3 (71-112)||(25784203-25784244)
[»] chr2 (8 HSPs)
chr2 (72-193)||(29718090-29718211)
chr2 (70-174)||(26861203-26861307)
chr2 (74-156)||(18985269-18985351)
chr2 (14-88)||(24788601-24788675)
chr2 (16-94)||(44583932-44584010)
chr2 (9-94)||(23651793-23651878)
chr2 (52-92)||(21554002-21554042)
chr2 (72-114)||(22497193-22497234)
[»] chr7 (6 HSPs)
chr7 (79-193)||(16068058-16068172)
chr7 (74-186)||(9692984-9693096)
chr7 (17-94)||(22612532-22612609)
chr7 (14-94)||(11657709-11657789)
chr7 (14-94)||(13475071-13475151)
chr7 (71-115)||(18466884-18466928)
[»] scaffold0385 (1 HSPs)
scaffold0385 (72-193)||(16144-16265)
[»] chr8 (8 HSPs)
chr8 (74-193)||(10454067-10454186)
chr8 (70-193)||(15727753-15727879)
chr8 (141-193)||(1683229-1683281)
chr8 (134-190)||(17861385-17861441)
chr8 (145-192)||(1681192-1681239)
chr8 (52-86)||(17883301-17883335)
chr8 (70-111)||(19862363-19862404)
chr8 (70-111)||(19867000-19867041)
[»] chr1 (4 HSPs)
chr1 (74-193)||(21496562-21496680)
chr1 (72-193)||(17451406-17451525)
chr1 (72-108)||(15545327-15545363)
chr1 (70-110)||(43154381-43154421)
[»] chr5 (9 HSPs)
chr5 (79-193)||(25791827-25791941)
chr5 (70-193)||(14137949-14138072)
chr5 (76-167)||(32948837-32948927)
chr5 (122-186)||(23909173-23909237)
chr5 (9-94)||(24760922-24761007)
chr5 (73-193)||(13938961-13939079)
chr5 (79-120)||(25756303-25756344)
chr5 (77-167)||(25581329-25581419)
chr5 (72-116)||(24564983-24565027)
[»] scaffold0010 (1 HSPs)
scaffold0010 (79-193)||(143102-143216)
[»] scaffold0364 (1 HSPs)
scaffold0364 (74-167)||(14588-14681)
[»] scaffold0118 (1 HSPs)
scaffold0118 (88-193)||(11955-12060)
[»] chr6 (7 HSPs)
chr6 (74-193)||(19545140-19545254)
chr6 (79-193)||(14746549-14746663)
chr6 (16-94)||(15119009-15119086)
chr6 (72-126)||(26587843-26587897)
chr6 (79-132)||(22395459-22395512)
chr6 (71-126)||(26588160-26588215)
chr6 (160-193)||(22395518-22395551)
[»] scaffold0408 (1 HSPs)
scaffold0408 (79-193)||(14984-15098)
[»] scaffold0290 (1 HSPs)
scaffold0290 (82-182)||(11838-11938)
[»] scaffold1043 (1 HSPs)
scaffold1043 (79-193)||(516-631)
[»] scaffold0094 (1 HSPs)
scaffold0094 (74-193)||(2496-2609)
[»] scaffold0207 (1 HSPs)
scaffold0207 (77-167)||(737-827)
[»] scaffold0166 (1 HSPs)
scaffold0166 (9-94)||(3419-3504)
[»] scaffold0145 (1 HSPs)
scaffold0145 (27-94)||(14735-14802)
[»] scaffold0381 (1 HSPs)
scaffold0381 (84-116)||(11515-11547)
[»] scaffold0035 (1 HSPs)
scaffold0035 (70-111)||(15397-15438)
[»] scaffold0149 (1 HSPs)
scaffold0149 (70-126)||(35468-35523)


Alignment Details
Target: chr4 (Bit Score: 153; Significance: 3e-81; HSPs: 15)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 153; E-Value: 3e-81
Query Start/End: Original strand, 9 - 193
Target Start/End: Complemental strand, 12230991 - 12230807
Alignment:
Q  9 agcatagggagagaagcagaaccctagtgtagcaacgtcaagtcaaaccgaaggtttctacggattcgaggtaagggggagaatctttgcactttagggt 108  Q
    |||| |||||||||||||||||||| |||||||||| ||||| ||||| |||||||||||| |||||||||||||||||| |||||||||||||||||||    
T  12230991 agcaaagggagagaagcagaaccctcgtgtagcaacatcaagccaaactgaaggtttctacagattcgaggtaagggggataatctttgcactttagggt 12230892  T
Q  109 atcttaatctattatgggagggttttcttaaattttaatatgttgttgctattatgatgtgaattttgatgagagaatgatgatg 193  Q
    |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  12230891 atcttaatctattatgggagggttgtcttaaattttaatatgttgttgctattatgatgtgaattttgatgagagaatgatgatg 12230807  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 92; E-Value: 7e-45
Query Start/End: Original strand, 74 - 193
Target Start/End: Complemental strand, 13268137 - 13268018
Alignment:
Q  74 tcgaggtaagggggagaatctttgcactttagggtatcttaatctattatgggagggttttcttaaattttaatatgttgttgctattatgatgtgaatt 173  Q
    ||||||||||||||||||||||||||||||||||||||||||| ||| |||||||||||||||||||||||||||  |||||| | ||||||||||||||    
T  13268137 tcgaggtaagggggagaatctttgcactttagggtatcttaatttatgatgggagggttttcttaaattttaatacattgttgttgttatgatgtgaatt 13268038  T
Q  174 ttgatgagagaatgatgatg 193  Q
    |||| |||||||||||||||    
T  13268037 ttgacgagagaatgatgatg 13268018  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 82; E-Value: 6e-39
Query Start/End: Original strand, 80 - 193
Target Start/End: Original strand, 19727534 - 19727647
Alignment:
Q  80 taagggggagaatctttgcactttagggtatcttaatctattatgggagggttttcttaaattttaatatgttgttgctattatgatgtgaattttgatg 179  Q
    ||||| ||||||||||||||||||||||||||||||||||| | ||||||||| ||||||||||||| |||||||| || |||||||||||||||||| |    
T  19727534 taaggcggagaatctttgcactttagggtatcttaatctatgacgggagggttgtcttaaattttaaaatgttgttactgttatgatgtgaattttgacg 19727633  T
Q  180 agagaatgatgatg 193  Q
    ||||||||||||||    
T  19727634 agagaatgatgatg 19727647  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 77; E-Value: 6e-36
Query Start/End: Original strand, 74 - 186
Target Start/End: Original strand, 13559361 - 13559473
Alignment:
Q  74 tcgaggtaagggggagaatctttgcactttagggtatcttaatctattatgggagggttttcttaaattttaatatgttgttgctattatgatgtgaatt 173  Q
    ||||||||||| |||||||||||||||||||| |||||||||||||| ||||||||||| ||||||||||||||| ||||||| | |||||||| ||| |    
T  13559361 tcgaggtaaggaggagaatctttgcactttagagtatcttaatctatgatgggagggttgtcttaaattttaataagttgttgatgttatgatgagaagt 13559460  T
Q  174 ttgatgagagaat 186  Q
    |||||||||||||    
T  13559461 ttgatgagagaat 13559473  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 76; E-Value: 2e-35
Query Start/End: Original strand, 74 - 193
Target Start/End: Original strand, 18554716 - 18554830
Alignment:
Q  74 tcgaggtaagggggagaatctttgcactttagggtatcttaatctattatgggagggttttcttaaattttaatatgttgttgctattatgatgtgaatt 173  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| ||  ||||||| ||     |||||||||||||||||| ||||||||||||||    
T  18554716 tcgaggtaagggggagaatctttgcactttagggtatcttaatctatgatatgagggttgtc-----ttttaatatgttgttgctgttatgatgtgaatt 18554810  T
Q  174 ttgatgagagaatgatgatg 193  Q
    ||||||||| ||||||||||    
T  18554811 ttgatgagaaaatgatgatg 18554830  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 75; E-Value: 9e-35
Query Start/End: Original strand, 79 - 193
Target Start/End: Complemental strand, 17419594 - 17419480
Alignment:
Q  79 gtaagggggagaatctttgcactttagggtatcttaatctattatgggagggttttcttaaattttaatatgttgttgctattatgatgtgaattttgat 178  Q
    |||||||| ||||||||||||||||||||||||||||||||| | || ||  || | ||||||||||| |||||||| ||||||||||||||||||||||    
T  17419594 gtaaggggaagaatctttgcactttagggtatcttaatctatgaaggaagatttgttttaaattttaaaatgttgttactattatgatgtgaattttgat 17419495  T
Q  179 gagagaatgatgatg 193  Q
    |||||||||||||||    
T  17419494 gagagaatgatgatg 17419480  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 70; E-Value: 9e-32
Query Start/End: Original strand, 72 - 193
Target Start/End: Original strand, 15870940 - 15871061
Alignment:
Q  72 attcgaggtaagggggagaatctttgcactttagggtatcttaatctattatgggagggttttcttaaattttaatatgttgttgctattatgatgtgaa 171  Q
    |||| |||||||||||||||||||||||||||||||||||||||| ||| ||||||||||| ||||||||||||||    | || || ||||||||| ||    
T  15870940 attcaaggtaagggggagaatctttgcactttagggtatcttaatttatgatgggagggttgtcttaaattttaatgcactttttctgttatgatgtaaa 15871039  T
Q  172 ttttgatgagagaatgatgatg 193  Q
    |||||||||| |||||||||||    
T  15871040 ttttgatgagtgaatgatgatg 15871061  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 58; E-Value: 1e-24
Query Start/End: Original strand, 72 - 193
Target Start/End: Original strand, 15888515 - 15888636
Alignment:
Q  72 attcgaggtaagggggagaatctttgcactttagggtatcttaatctattatgggagggttttcttaaattttaatatgttgttgctattatgatgtgaa 171  Q
    |||| ||||||| |||||||||||||||||||||| ||||| ||| ||| ||||||||||| ||||||||||||||    | ||||| ||||||||| ||    
T  15888515 attcaaggtaagagggagaatctttgcactttaggatatctaaatttatgatgggagggttgtcttaaattttaatgcacttttgctgttatgatgtaaa 15888614  T
Q  172 ttttgatgagagaatgatgatg 193  Q
    | |||||||| |||||||||||    
T  15888615 tattgatgagtgaatgatgatg 15888636  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 16 - 94
Target Start/End: Complemental strand, 8808890 - 8808812
Alignment:
Q  16 ggagagaagcagaaccctagtgtagcaacgtcaagtcaaaccgaaggtttctacggattcgaggtaagggggagaatct 94  Q
    ||||||| || ||||||||||| ||| |  || ||||||||| |||||||||||||||| |||||||||||||||||||    
T  8808890 ggagagaggcggaaccctagtgcagcgatatcgagtcaaaccaaaggtttctacggatttgaggtaagggggagaatct 8808812  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 40; E-Value: 0.00000000000007
Query Start/End: Original strand, 27 - 94
Target Start/End: Original strand, 16282913 - 16282980
Alignment:
Q  27 gaaccctagtgtagcaacgtcaagtcaaaccgaaggtttctacggattcgaggtaagggggagaatct 94  Q
    |||||||| || |||||| || ||||||||| || |||||||||| ||||||||||||||||||||||    
T  16282913 gaaccctactgcagcaacatcgagtcaaaccaaatgtttctacgggttcgaggtaagggggagaatct 16282980  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 16 - 94
Target Start/End: Complemental strand, 11558588 - 11558510
Alignment:
Q  16 ggagagaagcagaaccctagtgtagcaacgtcaagtcaaaccgaaggtttctacggattcgaggtaagggggagaatct 94  Q
    |||||||||  |||||||| || | |||| || || |||||||||||||||||||||||| |||||||| |||||||||    
T  11558588 ggagagaagtggaaccctaatgcaacaacatcgagccaaaccgaaggtttctacggattctaggtaaggaggagaatct 11558510  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 84 - 116
Target Start/End: Complemental strand, 9887029 - 9886997
Alignment:
Q  84 ggggagaatctttgcactttagggtatcttaat 116  Q
    |||||||||||||||||||||||||||||||||    
T  9887029 ggggagaatctttgcactttagggtatcttaat 9886997  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 74 - 188
Target Start/End: Complemental strand, 13235341 - 13235237
Alignment:
Q  74 tcgaggtaagggggagaatctttgcactttagggtatcttaatctattatgggagggttttcttaaattttaatatgttgttgctattatgatgtgaatt 173  Q
    |||||||||  ||| |||||||||||||||||||||| ||||| ||| | || ||||          |||||||||||||||  | ||||||||||||||    
T  13235341 tcgaggtaaacgggggaatctttgcactttagggtatattaatttatgacggaaggg----------ttttaatatgttgttagtgttatgatgtgaatt 13235252  T
Q  174 ttgatgagagaatga 188  Q
    |||| ||||||||||    
T  13235251 ttgacgagagaatga 13235237  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 82 - 116
Target Start/End: Original strand, 20872219 - 20872253
Alignment:
Q  82 agggggagaatctttgcactttagggtatcttaat 116  Q
    |||||||||||||||||||||| ||||||||||||    
T  20872219 agggggagaatctttgcacttttgggtatcttaat 20872253  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 71 - 120
Target Start/End: Original strand, 30275168 - 30275217
Alignment:
Q  71 gattcgaggtaagggggagaatctttgcactttagggtatcttaatctat 120  Q
    ||||||||||||| ||||||||| || |||||||||||| |||| |||||    
T  30275168 gattcgaggtaagtgggagaatcatttcactttagggtaacttattctat 30275217  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 113; Significance: 2e-57; HSPs: 15)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 113; E-Value: 2e-57
Query Start/End: Original strand, 9 - 193
Target Start/End: Complemental strand, 19186965 - 19186781
Alignment:
Q  9 agcatagggagagaagcagaaccctagtgtagcaacgtcaagtcaaaccgaaggtttctacggattcgaggtaagggggagaatctttgcactttagggt 108  Q
    |||| |||||||||||| ||||||||| | |||||| || || ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||    
T  19186965 agcagagggagagaagcggaaccctagggcagcaacatcgagccaaaccgaaggtttctacggattcgaggtaaggaggagaatctttgcactttagggt 19186866  T
Q  109 atcttaatctattatgggagggttttcttaaattttaatatgttgttgctattatgatgtgaattttgatgagagaatgatgatg 193  Q
    |||||||| ||| ||||| ||||  |||||||||||||||  |||||||| ||||||||||||||||||| || |||||||||||    
T  19186865 atcttaatttatgatgggtgggtcgtcttaaattttaatacattgttgctgttatgatgtgaattttgatcagtgaatgatgatg 19186781  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 82; E-Value: 6e-39
Query Start/End: Original strand, 72 - 193
Target Start/End: Complemental strand, 21977225 - 21977104
Alignment:
Q  72 attcgaggtaagggggagaatctttgcactttagggtatcttaatctattatgggagggttttcttaaattttaatatgttgttgctattatgatgtgaa 171  Q
    |||| |||||||||| ||||||||||||||||||||||||||||| ||| |||| |||||| |||||||||||||||  |||||||| ||||||||||||    
T  21977225 attcaaggtaaggggtagaatctttgcactttagggtatcttaatttatgatggaagggttgtcttaaattttaatacattgttgctgttatgatgtgaa 21977126  T
Q  172 ttttgatgagagaatgatgatg 193  Q
    |||||||||| |||||||||||    
T  21977125 ttttgatgagtgaatgatgatg 21977104  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 82; E-Value: 6e-39
Query Start/End: Original strand, 72 - 193
Target Start/End: Complemental strand, 21999656 - 21999535
Alignment:
Q  72 attcgaggtaagggggagaatctttgcactttagggtatcttaatctattatgggagggttttcttaaattttaatatgttgttgctattatgatgtgaa 171  Q
    |||| |||||||||| ||||||||||||||||||||||||||||| ||| |||| |||||| |||||||||||||||  |||||||| ||||||||||||    
T  21999656 attcaaggtaaggggtagaatctttgcactttagggtatcttaatttatgatggaagggttgtcttaaattttaatacattgttgctgttatgatgtgaa 21999557  T
Q  172 ttttgatgagagaatgatgatg 193  Q
    |||||||||| |||||||||||    
T  21999556 ttttgatgagtgaatgatgatg 21999535  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 76; E-Value: 2e-35
Query Start/End: Original strand, 72 - 191
Target Start/End: Complemental strand, 22161851 - 22161732
Alignment:
Q  72 attcgaggtaagggggagaatctttgcactttagggtatcttaatctattatgggagggttttcttaaattttaatatgttgttgctattatgatgtgaa 171  Q
    |||| |||||||||| ||||||||||||||||||||||||||||| ||| |||| |||||| |||||||||| ||||  |||||||| ||||||||||||    
T  22161851 attcaaggtaaggggtagaatctttgcactttagggtatcttaatttatgatggaagggttgtcttaaatttgaatacattgttgctgttatgatgtgaa 22161752  T
Q  172 ttttgatgagagaatgatga 191  Q
    |||||||||| |||||||||    
T  22161751 ttttgatgagtgaatgatga 22161732  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 73; E-Value: 1e-33
Query Start/End: Original strand, 74 - 186
Target Start/End: Complemental strand, 10341174 - 10341062
Alignment:
Q  74 tcgaggtaagggggagaatctttgcactttagggtatcttaatctattatgggagggttttcttaaattttaatatgttgttgctattatgatgtgaatt 173  Q
    |||| |||||||||||||| |||||||||||||||||||||||||||  ||||||| || ||||||||||||||| ||||||| | |||||||| |||||    
T  10341174 tcgaagtaagggggagaatatttgcactttagggtatcttaatctatggtgggaggattgtcttaaattttaataagttgttgatgttatgatgagaatt 10341075  T
Q  174 ttgatgagagaat 186  Q
    |||||||||||||    
T  10341074 ttgatgagagaat 10341062  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 66; E-Value: 2e-29
Query Start/End: Original strand, 74 - 167
Target Start/End: Complemental strand, 10302837 - 10302744
Alignment:
Q  74 tcgaggtaagggggagaatctttgcactttagggtatcttaatctattatgggagggttttcttaaattttaatatgttgttgctattatgatg 167  Q
    |||| ||| |||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||| ||||||| | ||||||||    
T  10302837 tcgaagtacgggggagaatctttgcactttagggtatcttaatctatgatgggagggttgtcttaaattttaataagttgttgatgttatgatg 10302744  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 58; E-Value: 1e-24
Query Start/End: Original strand, 72 - 193
Target Start/End: Original strand, 16357814 - 16357933
Alignment:
Q  72 attcgaggtaagggggagaatctttgcactttagggtatcttaatctattatgggagggttttcttaaattttaatatgttgttgctattatgatgtgaa 171  Q
    ||||||||||||||| ||||||||||||||||||||||||||||| ||| |||||| |||| ||||||||||||||    | ||||| ||||||||| ||    
T  16357814 attcgaggtaagggg-agaatctttgcactttagggtatcttaatttatgatggga-ggttgtcttaaattttaatgcacttttgctgttatgatgtaaa 16357911  T
Q  172 ttttgatgagagaatgatgatg 193  Q
    | |||||||| |||||||||||    
T  16357912 tgttgatgagtgaatgatgatg 16357933  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 8 - 94
Target Start/End: Complemental strand, 17793529 - 17793443
Alignment:
Q  8 tagcatagggagagaagcagaaccctagtgtagcaacgtcaagtcaaaccgaaggtttctacggattcgaggtaagggggagaatct 94  Q
    ||||| ||| |||||||| ||||| ||||| |||||| || || |||||||||||||||||| ||||||||||||||||||||||||    
T  17793529 tagcagaggaagagaagcggaaccgtagtgcagcaacatcgagccaaaccgaaggtttctacagattcgaggtaagggggagaatct 17793443  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 8 - 94
Target Start/End: Complemental strand, 19101969 - 19101883
Alignment:
Q  8 tagcatagggagagaagcagaaccctagtgtagcaacgtcaagtcaaaccgaaggtttctacggattcgaggtaagggggagaatct 94  Q
    ||||| ||| |||||||| ||||| ||||| |||||| || || |||||||||||||||||| ||||||||||||||||||||||||    
T  19101969 tagcagaggaagagaagcggaaccgtagtgcagcaacatcgagccaaaccgaaggtttctacagattcgaggtaagggggagaatct 19101883  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 50; E-Value: 8e-20
Query Start/End: Original strand, 9 - 94
Target Start/End: Original strand, 5941664 - 5941749
Alignment:
Q  9 agcatagggagagaagcagaaccctagtgtagcaacgtcaagtcaaaccgaaggtttctacggattcgaggtaagggggagaatct 94  Q
    |||||||||||||||||  ||||||||||||||||| ||  |||||||| |||||||||| ||||| |||||||||| ||||||||    
T  5941664 agcatagggagagaagcgaaaccctagtgtagcaacatcgggtcaaaccaaaggtttctatggatttgaggtaagggagagaatct 5941749  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 72 - 188
Target Start/End: Complemental strand, 16928670 - 16928556
Alignment:
Q  72 attcgaggtaagggggagaatctttgcactttagggtatcttaatctattatgg-gagggttttcttaaattttaatatgttgttgctattatgatgtga 170  Q
    |||||||||||||| |||||| ||| |||||||  |||||||||||||| ||||  |||||| |||||||||||||||||||||||   ||||| |||||    
T  16928670 attcgaggtaagggagagaatattttcactttaaagtatcttaatctatgatggaaagggttgtcttaaattttaatatgttgttg---ttatggtgtga 16928574  T
Q  171 attttgatgagagaatga 188  Q
    |||| || ||||| ||||    
T  16928573 atttggacgagaggatga 16928556  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 15 - 86
Target Start/End: Original strand, 21100629 - 21100700
Alignment:
Q  15 gggagagaagcagaaccctagtgtagcaacgtcaagtcaaaccgaaggtttctacggattcgaggtaagggg 86  Q
    ||||||||||| ||||||||||| |||||| || || ||||||||||||||||| ||||| |||||||||||    
T  21100629 gggagagaagcggaaccctagtgcagcaacatcgagccaaaccgaaggtttctatggatttgaggtaagggg 21100700  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 49 - 94
Target Start/End: Original strand, 15958242 - 15958287
Alignment:
Q  49 agtcaaaccgaaggtttctacggattcgaggtaagggggagaatct 94  Q
    |||| ||||||||||||||||||||| |||||||||||||||||||    
T  15958242 agtccaaccgaaggtttctacggatttgaggtaagggggagaatct 15958287  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 71 - 112
Target Start/End: Complemental strand, 21028912 - 21028871
Alignment:
Q  71 gattcgaggtaagggggagaatctttgcactttagggtatct 112  Q
    |||||||||||||||||||| || || |||||||||||||||    
T  21028912 gattcgaggtaagggggagattcctttcactttagggtatct 21028871  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 71 - 112
Target Start/End: Original strand, 25784203 - 25784244
Alignment:
Q  71 gattcgaggtaagggggagaatctttgcactttagggtatct 112  Q
    |||||||||||||||||||| || || |||||||||||||||    
T  25784203 gattcgaggtaagggggagattcctttcactttagggtatct 25784244  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 94; Significance: 4e-46; HSPs: 8)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 94; E-Value: 4e-46
Query Start/End: Original strand, 72 - 193
Target Start/End: Original strand, 29718090 - 29718211
Alignment:
Q  72 attcgaggtaagggggagaatctttgcactttagggtatcttaatctattatgggagggttttcttaaattttaatatgttgttgctattatgatgtgaa 171  Q
    ||||||||||||||||||||| |||||||||||| |||||||||||||| |||| |||||| ||||||||||||||||||||||| | ||||||||||||    
T  29718090 attcgaggtaagggggagaatatttgcactttagagtatcttaatctatgatggaagggttgtcttaaattttaatatgttgttgttgttatgatgtgaa 29718189  T
Q  172 ttttgatgagagaatgatgatg 193  Q
    ||||||||||||||||||||||    
T  29718190 ttttgatgagagaatgatgatg 29718211  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 61; E-Value: 2e-26
Query Start/End: Original strand, 70 - 174
Target Start/End: Original strand, 26861203 - 26861307
Alignment:
Q  70 ggattcgaggtaagggggagaatctttgcactttagggtatcttaatctattatgggagggttttcttaaattttaatatgttgttgctattatgatgtg 169  Q
    ||||||||||||||||||||| |||||||||||||||||||||||||| || |||| |||||| | |||||||||||||| || ||||| ||||| |||     
T  26861203 ggattcgaggtaagggggagattctttgcactttagggtatcttaatccatgatggaagggttgtattaaattttaatatattattgctgttatggtgtt 26861302  T
Q  170 aattt 174  Q
    |||||    
T  26861303 aattt 26861307  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 55; E-Value: 8e-23
Query Start/End: Original strand, 74 - 156
Target Start/End: Original strand, 18985269 - 18985351
Alignment:
Q  74 tcgaggtaagggggagaatctttgcactttagggtatcttaatctattatgggagggttttcttaaattttaatatgttgttg 156  Q
    ||||| ||||||||||||||||||||| |||||||||| |||||||| || |||||||| | |||||||||||||||||||||    
T  18985269 tcgagataagggggagaatctttgcacattagggtatcgtaatctatgataggagggttgtattaaattttaatatgttgttg 18985351  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 55; E-Value: 8e-23
Query Start/End: Original strand, 14 - 88
Target Start/End: Complemental strand, 24788675 - 24788601
Alignment:
Q  14 agggagagaagcagaaccctagtgtagcaacgtcaagtcaaaccgaaggtttctacggattcgaggtaaggggga 88  Q
    |||||||||||| ||||||||||| |||||| || || |||||||||||||||||||||||||||||||||||||    
T  24788675 agggagagaagcggaaccctagtgcagcaacttctagccaaaccgaaggtttctacggattcgaggtaaggggga 24788601  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 55; E-Value: 8e-23
Query Start/End: Original strand, 16 - 94
Target Start/End: Original strand, 44583932 - 44584010
Alignment:
Q  16 ggagagaagcagaaccctagtgtagcaacgtcaagtcaaaccgaaggtttctacggattcgaggtaagggggagaatct 94  Q
    |||||||||| ||| ||||||| |||||| |||||||||||| |||||||||||||||| |||||||||||||||||||    
T  44583932 ggagagaagcggaatcctagtgcagcaacatcaagtcaaaccaaaggtttctacggatttgaggtaagggggagaatct 44584010  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 9 - 94
Target Start/End: Original strand, 23651793 - 23651878
Alignment:
Q  9 agcatagggagagaagcagaaccctagtgtagcaacgtcaagtcaaaccgaaggtttctacggattcgaggtaagggggagaatct 94  Q
    |||| ||| |||||||| |||||||| || |||||| || || ||||| |||||| ||||| ||||||||||||||||||||||||    
T  23651793 agcaaaggtagagaagcggaaccctaatgcagcaacatcgagccaaactgaaggtatctacagattcgaggtaagggggagaatct 23651878  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 37; E-Value: 0.000000000004
Query Start/End: Original strand, 52 - 92
Target Start/End: Original strand, 21554002 - 21554042
Alignment:
Q  52 caaaccgaaggtttctacggattcgaggtaagggggagaat 92  Q
    |||| ||||||||||||||||||||||||||||||||||||    
T  21554002 caaaacgaaggtttctacggattcgaggtaagggggagaat 21554042  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 72 - 114
Target Start/End: Original strand, 22497193 - 22497234
Alignment:
Q  72 attcgaggtaagggggagaatctttgcactttagggtatctta 114  Q
    ||||||| ||||||||||||||||||||| |||||||||||||    
T  22497193 attcgagctaagggggagaatctttgcac-ttagggtatctta 22497234  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 87; Significance: 6e-42; HSPs: 6)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 87; E-Value: 6e-42
Query Start/End: Original strand, 79 - 193
Target Start/End: Original strand, 16068058 - 16068172
Alignment:
Q  79 gtaagggggagaatctttgcactttagggtatcttaatctattatgggagggttttcttaaattttaatatgttgttgctattatgatgtgaattttgat 178  Q
    ||||||||||||||||||||| |||||||||||||||||||| | ||||||||| |||||||||||||||||||||| || |||||||||||||||||||    
T  16068058 gtaagggggagaatctttgcaatttagggtatcttaatctatgacgggagggttgtcttaaattttaatatgttgttactgttatgatgtgaattttgat 16068157  T
Q  179 gagagaatgatgatg 193  Q
    |||| ||||||||||    
T  16068158 gagaaaatgatgatg 16068172  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 77; E-Value: 6e-36
Query Start/End: Original strand, 74 - 186
Target Start/End: Original strand, 9692984 - 9693096
Alignment:
Q  74 tcgaggtaagggggagaatctttgcactttagggtatcttaatctattatgggagggttttcttaaattttaatatgttgttgctattatgatgtgaatt 173  Q
    ||||||||||| |||||||||||||||||||| |||||||||||||| ||||||||||| ||||||||||||||| ||||||| | |||||||| ||| |    
T  9692984 tcgaggtaaggaggagaatctttgcactttagagtatcttaatctatgatgggagggttgtcttaaattttaataagttgttgatgttatgatgagaagt 9693083  T
Q  174 ttgatgagagaat 186  Q
    |||||||||||||    
T  9693084 ttgatgagagaat 9693096  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 54; E-Value: 3e-22
Query Start/End: Original strand, 17 - 94
Target Start/End: Original strand, 22612532 - 22612609
Alignment:
Q  17 gagagaagcagaaccctagtgtagcaacgtcaagtcaaaccgaaggtttctacggattcgaggtaagggggagaatct 94  Q
    ||||||||| ||||||||||| | |||| || || |||||||||||||||||||||||||||||||||||||||||||    
T  22612532 gagagaagcggaaccctagtgcaacaacatcgagccaaaccgaaggtttctacggattcgaggtaagggggagaatct 22612609  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 49; E-Value: 3e-19
Query Start/End: Original strand, 14 - 94
Target Start/End: Complemental strand, 11657789 - 11657709
Alignment:
Q  14 agggagagaagcagaaccctagtgtagcaacgtcaagtcaaaccgaaggtttctacggattcgaggtaagggggagaatct 94  Q
    |||||||||||  ||||||||||| ||| || ||||| |||||| ||||||||||||||||||||||||||| ||||||||    
T  11657789 agggagagaagaggaaccctagtgcagctacatcaagccaaaccaaaggtttctacggattcgaggtaagggtgagaatct 11657709  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 49; E-Value: 3e-19
Query Start/End: Original strand, 14 - 94
Target Start/End: Original strand, 13475071 - 13475151
Alignment:
Q  14 agggagagaagcagaaccctagtgtagcaacgtcaagtcaaaccgaaggtttctacggattcgaggtaagggggagaatct 94  Q
    |||||||||||| ||||||||||| |||||| || || |||| |||||||||||||||||||||||||| ||| |||||||    
T  13475071 agggagagaagctgaaccctagtgcagcaacatcgaggcaaatcgaaggtttctacggattcgaggtaaagggaagaatct 13475151  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 71 - 115
Target Start/End: Original strand, 18466884 - 18466928
Alignment:
Q  71 gattcgaggtaagggggagaatctttgcactttagggtatcttaa 115  Q
    ||||||| ||||||||||||||||||   ||||||||||||||||    
T  18466884 gattcgatgtaagggggagaatctttttcctttagggtatcttaa 18466928  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0385 (Bit Score: 86; Significance: 3e-41; HSPs: 1)
Name: scaffold0385
Description:

Target: scaffold0385; HSP #1
Raw Score: 86; E-Value: 3e-41
Query Start/End: Original strand, 72 - 193
Target Start/End: Complemental strand, 16265 - 16144
Alignment:
Q  72 attcgaggtaagggggagaatctttgcactttagggtatcttaatctattatgggagggttttcttaaattttaatatgttgttgctattatgatgtgaa 171  Q
    |||||||||||||||||||||||||| |||||||||||||||||| ||| ||||||||||  |||||||||||||||  |||||||| ||||||||||||    
T  16265 attcgaggtaagggggagaatctttgtactttagggtatcttaatttatgatgggagggtcgtcttaaattttaatacattgttgcttttatgatgtgaa 16166  T
Q  172 ttttgatgagagaatgatgatg 193  Q
    |||||||||| |||||||||||    
T  16165 ttttgatgagtgaatgatgatg 16144  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 80; Significance: 1e-37; HSPs: 8)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 74 - 193
Target Start/End: Original strand, 10454067 - 10454186
Alignment:
Q  74 tcgaggtaagggggagaatctttgcactttagggtatcttaatctattatgggagggttttcttaaattttaatatgttgttgctattatgatgtgaatt 173  Q
    ||||||||||||| |||||||||| |||||||||||||||||||||| ||||| ||||| || || ||||||||||||| ||||| ||||| ||||||||    
T  10454067 tcgaggtaaggggaagaatctttgaactttagggtatcttaatctatgatgggtgggttgtcctatattttaatatgtttttgctgttatggtgtgaatt 10454166  T
Q  174 ttgatgagagaatgatgatg 193  Q
    ||||||||||||||||||||    
T  10454167 ttgatgagagaatgatgatg 10454186  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 57; E-Value: 5e-24
Query Start/End: Original strand, 70 - 193
Target Start/End: Complemental strand, 15727879 - 15727753
Alignment:
Q  70 ggattcgaggtaagggggagaatctttgcactttagggtatcttaatctattatgg------gagggttttcttaaattttaatatgttgttgctattat 163  Q
    |||||||||||||||||||||||| || ||||||||||||||||||||||| ||||      ||||||| | ||| |||||||||||||||||   ||||    
T  15727879 ggattcgaggtaagggggagaatccttacactttagggtatcttaatctatgatgggattgagagggttgtattagattttaatatgttgttg---ttat 15727783  T
Q  164 gatgtgaattttgatgagagaatgatgatg 193  Q
    |||||||||||| ||||||| |||| ||||    
T  15727782 gatgtgaatttttatgagaggatgaagatg 15727753  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 141 - 193
Target Start/End: Complemental strand, 1683281 - 1683229
Alignment:
Q  141 ttttaatatgttgttgctattatgatgtgaattttgatgagagaatgatgatg 193  Q
    |||||||||||||||||  ||||||||||||||||||||||||| ||||||||    
T  1683281 ttttaatatgttgttgcggttatgatgtgaattttgatgagagactgatgatg 1683229  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 134 - 190
Target Start/End: Original strand, 17861385 - 17861441
Alignment:
Q  134 tcttaaattttaatatgttgttgctattatgatgtgaattttgatgagagaatgatg 190  Q
    ||||||||||||| |||||||| || |||||| ||||||||||||||||||||||||    
T  17861385 tcttaaattttaaaatgttgttactgttatgacgtgaattttgatgagagaatgatg 17861441  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 145 - 192
Target Start/End: Complemental strand, 1681239 - 1681192
Alignment:
Q  145 aatatgttgttgctattatgatgtgaattttgatgagagaatgatgat 192  Q
    |||||||||||||  ||||||||||||||||||||||||| |||||||    
T  1681239 aatatgttgttgcggttatgatgtgaattttgatgagagactgatgat 1681192  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 52 - 86
Target Start/End: Complemental strand, 17883335 - 17883301
Alignment:
Q  52 caaaccgaaggtttctacggattcgaggtaagggg 86  Q
    ||||||||||||||||| |||||||||||||||||    
T  17883335 caaaccgaaggtttctatggattcgaggtaagggg 17883301  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 70 - 111
Target Start/End: Complemental strand, 19862404 - 19862363
Alignment:
Q  70 ggattcgaggtaagggggagaatctttgcactttagggtatc 111  Q
    ||||||||||||||||||||| || || ||||||||||||||    
T  19862404 ggattcgaggtaagggggagattcctttcactttagggtatc 19862363  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 70 - 111
Target Start/End: Complemental strand, 19867041 - 19867000
Alignment:
Q  70 ggattcgaggtaagggggagaatctttgcactttagggtatc 111  Q
    ||||||||||||||||||||| || || ||||||||||||||    
T  19867041 ggattcgaggtaagggggagattcctttcactttagggtatc 19867000  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 80; Significance: 1e-37; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 74 - 193
Target Start/End: Complemental strand, 21496680 - 21496562
Alignment:
Q  74 tcgaggtaagggggagaatctttgcactttagggtatcttaatctattatgggagggttttcttaaattttaatatgttgttgctattatgatgtgaatt 173  Q
    |||||||||||||||||||||||||||||||||||||||||||||| | |||||||||| |||||||||| ||||||||||| ||| |||||| |||||     
T  21496680 tcgaggtaagggggagaatctttgcactttagggtatcttaatcta-tgtgggagggttatcttaaatttaaatatgttgtttctaatatgatatgaata 21496582  T
Q  174 ttgatgagagaatgatgatg 193  Q
    || |||||||||||||||||    
T  21496581 tttatgagagaatgatgatg 21496562  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 72 - 193
Target Start/End: Complemental strand, 17451525 - 17451406
Alignment:
Q  72 attcgaggtaagggggagaatctttgcactttagggtatcttaatctattatgggagggttttcttaaattttaatatgttgttgctattatgatgtga- 170  Q
    |||||||| |||||  ||||||||||||||||||||||||||||| ||| || ||||||  |  |||| | |||| ||| ||||||| |||||||||||     
T  17451525 attcgagggaagggatagaatctttgcactttagggtatcttaatatatgat-ggaggg--taattaattcttaagatgatgttgctcttatgatgtgag 17451429  T
Q  171 attttgatgagagaatgatgatg 193  Q
    ||| |||||||||| | ||||||    
T  17451428 attgtgatgagagatttatgatg 17451406  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 72 - 108
Target Start/End: Complemental strand, 15545363 - 15545327
Alignment:
Q  72 attcgaggtaagggggagaatctttgcactttagggt 108  Q
    ||||||||||||||| |||||||||||||||||||||    
T  15545363 attcgaggtaaggggtagaatctttgcactttagggt 15545327  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 70 - 110
Target Start/End: Original strand, 43154381 - 43154421
Alignment:
Q  70 ggattcgaggtaagggggagaatctttgcactttagggtat 110  Q
    ||||||||||||||||||||||||| |  ||||||||||||    
T  43154381 ggattcgaggtaagggggagaatctcttaactttagggtat 43154421  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 79; Significance: 4e-37; HSPs: 9)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 79; E-Value: 4e-37
Query Start/End: Original strand, 79 - 193
Target Start/End: Complemental strand, 25791941 - 25791827
Alignment:
Q  79 gtaagggggagaatctttgcactttagggtatcttaatctattatgggagggttttcttaaattttaatatgttgttgctattatgatgtgaattttgat 178  Q
    ||||| ||||||||||||| |||||||||||||||||||||| |  |||||||||||||||||||||| |||||||| || |||||||||||| ||||||    
T  25791941 gtaagagggagaatctttgaactttagggtatcttaatctatgacaggagggttttcttaaattttaaaatgttgttactgttatgatgtgaactttgat 25791842  T
Q  179 gagagaatgatgatg 193  Q
    |||||||||||||||    
T  25791841 gagagaatgatgatg 25791827  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 60; E-Value: 8e-26
Query Start/End: Original strand, 70 - 193
Target Start/End: Complemental strand, 14138072 - 14137949
Alignment:
Q  70 ggattcgaggtaagggggagaatctttgcactttagggtatcttaatctattatgggagggttttcttaaattttaatatgttgttgctattatgatgtg 169  Q
    ||||||||||||||||||| ||||| |  |||||||||||||||| | | | ||||||||||| |||||||| |||||||||||||| | ||||| ||||    
T  14138072 ggattcgaggtaagggggacaatctctttactttagggtatcttattatttgatgggagggttgtcttaaatcttaatatgttgttgttgttatgctgtg 14137973  T
Q  170 aattttgatgagagaatgatgatg 193  Q
    |||||||||||  |||| ||||||    
T  14137972 aattttgatgaaggaataatgatg 14137949  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 60; E-Value: 8e-26
Query Start/End: Original strand, 76 - 167
Target Start/End: Complemental strand, 32948927 - 32948837
Alignment:
Q  76 gaggtaagggggagaatctttgcactttagggtatcttaatctattatgggagggttttcttaaattttaatatgttgttgctattatgatg 167  Q
    |||||||||||||||||||||||||||||| |||||| ||||| | ||||||||||| |||| |||||||||||||||||||| ||||||||    
T  32948927 gaggtaagggggagaatctttgcactttagagtatctaaatct-tgatgggagggttgtctttaattttaatatgttgttgctgttatgatg 32948837  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 122 - 186
Target Start/End: Complemental strand, 23909237 - 23909173
Alignment:
Q  122 atgggagggttttcttaaattttaatatgttgttgctattatgatgtgaattttgatgagagaat 186  Q
    ||||||||||| ||||||||||||||| ||||||| | |||||||| ||||||||||||||||||    
T  23909237 atgggagggttgtcttaaattttaataagttgttgttgttatgatgagaattttgatgagagaat 23909173  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 9 - 94
Target Start/End: Complemental strand, 24761007 - 24760922
Alignment:
Q  9 agcatagggagagaagcagaaccctagtgtagcaacgtcaagtcaaaccgaaggtttctacggattcgaggtaagggggagaatct 94  Q
    ||||||||||||||| | ||||||||||| | ||||  | || ||||||||||||||||| |||||||||||||| ||| ||||||    
T  24761007 agcatagggagagaacctgaaccctagtgcaacaacaccgagccaaaccgaaggtttctaaggattcgaggtaagagggggaatct 24760922  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 73 - 193
Target Start/End: Complemental strand, 13939079 - 13938961
Alignment:
Q  73 ttcgaggtaagggggagaatctttgcactttagggtatcttaatctattatgggagggttttcttaaattttaatatgttgttgctattatgatgtga-a 171  Q
    ||||||||||| || |||||||||||||||||| |||||||||| ||| || ||| ||| |  |||| | |||| ||||||||| | ||||||||||| |    
T  13939079 ttcgaggtaagaggaagaatctttgcactttagtgtatcttaatatatgat-ggacggtgt--ttaattcttaagatgttgttgttgttatgatgtgaga 13938983  T
Q  172 ttttgatgagagaatgatgatg 193  Q
    ||||||||||||| | ||||||    
T  13938982 ttttgatgagagatttatgatg 13938961  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 79 - 120
Target Start/End: Original strand, 25756303 - 25756344
Alignment:
Q  79 gtaagggggagaatctttgcactttagggtatcttaatctat 120  Q
    ||||| ||||||||||||||||||||||||||||||||||||    
T  25756303 gtaagagggagaatctttgcactttagggtatcttaatctat 25756344  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 77 - 167
Target Start/End: Original strand, 25581329 - 25581419
Alignment:
Q  77 aggtaagggggagaatctttgcactttagggtatcttaatctattatgggagggttttcttaaattttaa-tatgttgttgctattatgatg 167  Q
    |||||||||||||||||||| |||||||||||||||| |||||| || |||||    |||| |||||||| |||||||||| | ||||||||    
T  25581329 aggtaagggggagaatctttccactttagggtatctt-atctatgattggaggaacgtctttaattttaattatgttgttgttgttatgatg 25581419  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 72 - 116
Target Start/End: Complemental strand, 24565027 - 24564983
Alignment:
Q  72 attcgaggtaagggggagaatctttgcactttagggtatcttaat 116  Q
    ||||||||||| ||| | ||||||||||||||||||| |||||||    
T  24565027 attcgaggtaatgggaaaaatctttgcactttagggtctcttaat 24564983  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0010 (Bit Score: 75; Significance: 9e-35; HSPs: 1)
Name: scaffold0010
Description:

Target: scaffold0010; HSP #1
Raw Score: 75; E-Value: 9e-35
Query Start/End: Original strand, 79 - 193
Target Start/End: Complemental strand, 143216 - 143102
Alignment:
Q  79 gtaagggggagaatctttgcactttagggtatcttaatctattatgggagggttttcttaaattttaatatgttgttgctattatgatgtgaattttgat 178  Q
    ||||||||| |||||||| ||||||| ||||||||||||||| |||||| |||| ||||||||||||| |||||||| || |||||||||||||||||||    
T  143216 gtaagggggtgaatcttttcactttatggtatcttaatctatgatgggaaggttgtcttaaattttaaaatgttgttactgttatgatgtgaattttgat 143117  T
Q  179 gagagaatgatgatg 193  Q
    |||||| ||||||||    
T  143116 gagagattgatgatg 143102  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0364 (Bit Score: 74; Significance: 4e-34; HSPs: 1)
Name: scaffold0364
Description:

Target: scaffold0364; HSP #1
Raw Score: 74; E-Value: 4e-34
Query Start/End: Original strand, 74 - 167
Target Start/End: Complemental strand, 14681 - 14588
Alignment:
Q  74 tcgaggtaagggggagaatctttgcactttagggtatcttaatctattatgggagggttttcttaaattttaatatgttgttgctattatgatg 167  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||| ||||| |||||||||||||| ||||||||    
T  14681 tcgaggtaagggggagaatctttgcactttagggtatcttaatctatgatgggagggttgtctttaatttcaatatgttgttgctgttatgatg 14588  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0118 (Bit Score: 74; Significance: 4e-34; HSPs: 1)
Name: scaffold0118
Description:

Target: scaffold0118; HSP #1
Raw Score: 74; E-Value: 4e-34
Query Start/End: Original strand, 88 - 193
Target Start/End: Complemental strand, 12060 - 11955
Alignment:
Q  88 agaatctttgcactttagggtatcttaatctattatgggagggttttcttaaattttaatatgttgttgctattatgatgtgaattttgatgagagaatg 187  Q
    ||||| ||||||||||||||||||||||| ||| ||||||||||| ||||||||||||||   |||||||| ||||||||||||||||||||||||||||    
T  12060 agaatatttgcactttagggtatcttaatttatgatgggagggttgtcttaaattttaattcattgttgctgttatgatgtgaattttgatgagagaatg 11961  T
Q  188 atgatg 193  Q
    ||||||    
T  11960 atgatg 11955  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 72; Significance: 6e-33; HSPs: 7)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 72; E-Value: 6e-33
Query Start/End: Original strand, 74 - 193
Target Start/End: Original strand, 19545140 - 19545254
Alignment:
Q  74 tcgaggtaagggggagaatctttgcactttagggtatcttaatctattatgggagggttttcttaaattttaatatgttgttgctattatgatgtgaatt 173  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| ||  ||||||| ||     |||||||||||||||||| |||| |||||||||    
T  19545140 tcgaggtaagggggagaatctttgcactttagggtatcttaatctatgatatgagggttgtc-----ttttaatatgttgttgctgttataatgtgaatt 19545234  T
Q  174 ttgatgagagaatgatgatg 193  Q
    ||||||||| ||||||||||    
T  19545235 ttgatgagaaaatgatgatg 19545254  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 71; E-Value: 2e-32
Query Start/End: Original strand, 79 - 193
Target Start/End: Complemental strand, 14746663 - 14746549
Alignment:
Q  79 gtaagggggagaatctttgcactttagggtatcttaatctattatgggagggttttcttaaattttaatatgttgttgctattatgatgtgaattttgat 178  Q
    ||||||||||||||||||||||| |||||||||||||||||| | | || ||||  |||||||||||| |||||||| || |||||||||||||||| ||    
T  14746663 gtaagggggagaatctttgcactatagggtatcttaatctatgaggagaaggttgacttaaattttaaaatgttgttactgttatgatgtgaatttttat 14746564  T
Q  179 gagagaatgatgatg 193  Q
    |||||||||||||||    
T  14746563 gagagaatgatgatg 14746549  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 16 - 94
Target Start/End: Complemental strand, 15119086 - 15119009
Alignment:
Q  16 ggagagaagcagaaccctagtgtagcaacgtcaagtcaaaccgaaggtttctacggattcgaggtaagggggagaatct 94  Q
    |||||||||||||||||||||| |||||| || ||  ||| ||||||||||||| |||||||||||||||| |||||||    
T  15119086 ggagagaagcagaaccctagtgcagcaacatcgagctaaatcgaaggtttctac-gattcgaggtaaggggaagaatct 15119009  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 72 - 126
Target Start/End: Complemental strand, 26587897 - 26587843
Alignment:
Q  72 attcgaggtaagggggagaatctttgcactttagggtatcttaatctattatggg 126  Q
    ||||||||||| ||||||||||||| ||||||||||||||||||||||| |||||    
T  26587897 attcgaggtaaaggggagaatcttttcactttagggtatcttaatctatgatggg 26587843  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 79 - 132
Target Start/End: Original strand, 22395459 - 22395512
Alignment:
Q  79 gtaagggggagaatctttgcactttagggtatcttaatctattatgggagggtt 132  Q
    |||||||||||| ||||||||||||||||||||||||| ||| |||||||||||    
T  22395459 gtaagggggagagtctttgcactttagggtatcttaatatatgatgggagggtt 22395512  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 71 - 126
Target Start/End: Complemental strand, 26588215 - 26588160
Alignment:
Q  71 gattcgaggtaagggggagaatctttgcactttagggtatcttaatctattatggg 126  Q
    |||||||||||||||||||  || || ||||||||||||||||||||||| |||||    
T  26588215 gattcgaggtaagggggaggttcctttcactttagggtatcttaatctatgatggg 26588160  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 160 - 193
Target Start/End: Original strand, 22395518 - 22395551
Alignment:
Q  160 ttatgatgtgaattttgatgagagaatgatgatg 193  Q
    |||||||||||||||||||||||||| |||||||    
T  22395518 ttatgatgtgaattttgatgagagaaagatgatg 22395551  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0408 (Bit Score: 71; Significance: 2e-32; HSPs: 1)
Name: scaffold0408
Description:

Target: scaffold0408; HSP #1
Raw Score: 71; E-Value: 2e-32
Query Start/End: Original strand, 79 - 193
Target Start/End: Complemental strand, 15098 - 14984
Alignment:
Q  79 gtaagggggagaatctttgcactttagggtatcttaatctattatgggagggttttcttaaattttaatatgttgttgctattatgatgtgaattttgat 178  Q
    ||||||||||||||||||||||| |||||||||||||||||| | | || ||||  |||||||||||| |||||||| || |||||||||||||||| ||    
T  15098 gtaagggggagaatctttgcactatagggtatcttaatctatgaggagaaggttgacttaaattttaaaatgttgttactgttatgatgtgaatttttat 14999  T
Q  179 gagagaatgatgatg 193  Q
    |||||||||||||||    
T  14998 gagagaatgatgatg 14984  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0290 (Bit Score: 65; Significance: 9e-29; HSPs: 1)
Name: scaffold0290
Description:

Target: scaffold0290; HSP #1
Raw Score: 65; E-Value: 9e-29
Query Start/End: Original strand, 82 - 182
Target Start/End: Original strand, 11838 - 11938
Alignment:
Q  82 agggggagaatctttgcactttagggtatcttaatctattatgggagggttttcttaaattttaatatgttgttgctattatgatgtgaattttgatgag 181  Q
    ||||||||||||||||||||||||||| || |||| ||| || |||||||| | ||||||||||||||||||||||| ||||||||| ||||||||||||    
T  11838 agggggagaatctttgcactttagggtgtcgtaatttatgataggagggttgtattaaattttaatatgttgttgctgttatgatgtaaattttgatgag 11937  T
Q  182 a 182  Q
    |    
T  11938 a 11938  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1043 (Bit Score: 64; Significance: 3e-28; HSPs: 1)
Name: scaffold1043
Description:

Target: scaffold1043; HSP #1
Raw Score: 64; E-Value: 3e-28
Query Start/End: Original strand, 79 - 193
Target Start/End: Original strand, 516 - 631
Alignment:
Q  79 gtaagggggagaatctttgcactttagggtatcttaatctattatgggagggttttcttaaa-ttttaatatgttgttgctattatgatgtgaattttga 177  Q
    ||||||||||||||||||||| | ||| |||||||||||||| ||| ||||||| ||||||| |||||| |||||||| || ||||||| |||||||| |    
T  516 gtaagggggagaatctttgcaatgtagagtatcttaatctatgatgagagggttgtcttaaatttttaaaatgttgttactgttatgatatgaattttta 615  T
Q  178 tgagagaatgatgatg 193  Q
    ||||||||||||||||    
T  616 tgagagaatgatgatg 631  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0094 (Bit Score: 60; Significance: 8e-26; HSPs: 1)
Name: scaffold0094
Description:

Target: scaffold0094; HSP #1
Raw Score: 60; E-Value: 8e-26
Query Start/End: Original strand, 74 - 193
Target Start/End: Original strand, 2496 - 2609
Alignment:
Q  74 tcgaggtaagggggagaatctttgcactttagggtatcttaatctattatgggagggttttcttaaattttaatatgttgttgctattatgatgtgaatt 173  Q
    |||||||||||||||||||||||||| |||||||||||||||||||| ||  |||||     ||| |||||||||||||||||||  |||||||||||||    
T  2496 tcgaggtaagggggagaatctttgca-tttagggtatcttaatctatgatatgaggg-----ttatattttaatatgttgttgctggtatgatgtgaatt 2589  T
Q  174 ttgatgagagaatgatgatg 193  Q
    |||| |||| ||||||||||    
T  2590 ttgacgagaaaatgatgatg 2609  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0207 (Bit Score: 56; Significance: 2e-23; HSPs: 1)
Name: scaffold0207
Description:

Target: scaffold0207; HSP #1
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 77 - 167
Target Start/End: Original strand, 737 - 827
Alignment:
Q  77 aggtaagggggagaatctttgcactttagggtatcttaatctattatgggagggttttcttaaattttaa-tatgttgttgctattatgatg 167  Q
    ||||||||||||||| |||||||||||||||||||||||||||| || |||||||| |||| |||||||| |||||||||||| ||||||||    
T  737 aggtaagggggagaa-ctttgcactttagggtatcttaatctatgattggagggttgtctttaattttaattatgttgttgctgttatgatg 827  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0166 (Bit Score: 42; Significance: 0.000000000000005; HSPs: 1)
Name: scaffold0166
Description:

Target: scaffold0166; HSP #1
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 9 - 94
Target Start/End: Complemental strand, 3504 - 3419
Alignment:
Q  9 agcatagggagagaagcagaaccctagtgtagcaacgtcaagtcaaaccgaaggtttctacggattcgaggtaagggggagaatct 94  Q
    ||||||||||||||| | ||||||||||| | ||||  | || ||||||||||||||||| |||||||||||||| ||| ||||||    
T  3504 agcatagggagagaacctgaaccctagtgcaacaacaccgagccaaaccgaaggtttctaaggattcgaggtaagagggggaatct 3419  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0145 (Bit Score: 40; Significance: 0.00000000000007; HSPs: 1)
Name: scaffold0145
Description:

Target: scaffold0145; HSP #1
Raw Score: 40; E-Value: 0.00000000000007
Query Start/End: Original strand, 27 - 94
Target Start/End: Complemental strand, 14802 - 14735
Alignment:
Q  27 gaaccctagtgtagcaacgtcaagtcaaaccgaaggtttctacggattcgaggtaagggggagaatct 94  Q
    |||||||| || |||||| || ||||||||| || |||||||||| ||||||||||||||||||||||    
T  14802 gaaccctactgcagcaacatcgagtcaaaccaaatgtttctacgggttcgaggtaagggggagaatct 14735  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0381 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: scaffold0381
Description:

Target: scaffold0381; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 84 - 116
Target Start/End: Original strand, 11515 - 11547
Alignment:
Q  84 ggggagaatctttgcactttagggtatcttaat 116  Q
    |||||||||||||||||||||||||||||||||    
T  11515 ggggagaatctttgcactttagggtatcttaat 11547  T

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Target: scaffold0035 (Bit Score: 30; Significance: 0.00000007; HSPs: 1)
Name: scaffold0035
Description:

Target: scaffold0035; HSP #1
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 70 - 111
Target Start/End: Original strand, 15397 - 15438
Alignment:
Q  70 ggattcgaggtaagggggagaatctttgcactttagggtatc 111  Q
    ||||||||||||||||||||| || || ||||||||||||||    
T  15397 ggattcgaggtaagggggagattcctttcactttagggtatc 15438  T

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Target: scaffold0149 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: scaffold0149
Description:

Target: scaffold0149; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 70 - 126
Target Start/End: Original strand, 35468 - 35523
Alignment:
Q  70 ggattcgaggtaagggggagaatctttgcactttagggtatcttaatctattatggg 126  Q
    ||||||||||||||||||||| || |  ||||||||||||| ||||||||| |||||    
T  35468 ggattcgaggtaagggggagattcctaccactttagggtat-ttaatctatgatggg 35523  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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