View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4202_low_6 (Length: 388)
Name: NF4202_low_6
Description: NF4202
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4202_low_6 |
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Alignment Details
Target: chr7 (Bit Score: 351; Significance: 0; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 351; E-Value: 0
Query Start/End: Original strand, 20 - 382
Target Start/End: Original strand, 33992636 - 33992998
Alignment:
| Q |
20 |
agtagcaggtcctgccatattcaataggttttcaacatttggtatcatggtagttgctcaatccttcattggtcatattggttcaaccgaattagctgct |
119 |
Q |
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| T |
33992636 |
agtagcaggtcctgccatattcaataggttttcaacatttggtatcatggtagttgctcaatccttcattggtcatattggttcaaccgaattagctgct |
33992735 |
T |
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| Q |
120 |
tatgcccttgttatgactgtcctagtcaggtttgcaaatggtattctggtaagtcaattgttcctcaatcgtttaaatcgcagtcgcaattttgatattg |
219 |
Q |
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| T |
33992736 |
tatgcccttgttatgactgtcctagtcaggtttgcaaatggtattctggtaagtcaattgttcctcaatcgtttaaatcgcagtcacaattttgatattg |
33992835 |
T |
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| Q |
220 |
caaagaatcgtgatcaaatatcatcgatactacctcaatcgcaattgtattatagacatcaaaaaccttgatgtcacaaatacaattgcgatccagggca |
319 |
Q |
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| T |
33992836 |
caaagaatcgtgatcaaatatcatcgatgctacctcaatcgcaattgtattatagacatcaaaaaccttgatgtcacaaatacaattgcgatccagggca |
33992935 |
T |
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| Q |
320 |
gcgtatgaaaatcttgctttaattaataatcattatgaattcatatcttatcacctatgctac |
382 |
Q |
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| T |
33992936 |
gcgtatgaaaatcttgctttaattaataatcattatgtattcatatcttatcacctatgctac |
33992998 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 114; E-Value: 1e-57
Query Start/End: Original strand, 20 - 177
Target Start/End: Original strand, 33982878 - 33983035
Alignment:
| Q |
20 |
agtagcaggtcctgccatattcaataggttttcaacatttggtatcatggtagttgctcaatccttcattggtcatattggttcaaccgaattagctgct |
119 |
Q |
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||||||||| |||||||| |||| ||||||||||||||||||||||||| ||||| ||||||||||||||||| | |||||||||||||| |||||||| |
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| T |
33982878 |
agtagcaggccctgccatgttcactaggttttcaacatttggtatcatgatagttactcaatccttcattggttacattggttcaaccgagttagctgcc |
33982977 |
T |
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| Q |
120 |
tatgcccttgttatgactgtcctagtcaggtttgcaaatggtattctggtaagtcaat |
177 |
Q |
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||| ||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
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| T |
33982978 |
tattcccttgttatgactgtcctagtcagatttgcaaatggtattctggtaagtcaat |
33983035 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 249 - 309
Target Start/End: Original strand, 33992995 - 33993054
Alignment:
| Q |
249 |
ctacctcaatcgcaattgtattatagacatcaaaaaccttgatgtcacaaatacaattgcg |
309 |
Q |
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|||||||||||||||| |||||||||| |||||||||| | ||||||||| |||||||||| |
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| T |
33992995 |
ctacctcaatcgcaatagtattatagatatcaaaaaccat-atgtcacaagtacaattgcg |
33993054 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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