View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4202_low_8 (Length: 322)
Name: NF4202_low_8
Description: NF4202
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4202_low_8 |
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Alignment Details
Target: chr6 (Bit Score: 233; Significance: 1e-129; HSPs: 4)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 233; E-Value: 1e-129
Query Start/End: Original strand, 2 - 321
Target Start/End: Complemental strand, 30935454 - 30935137
Alignment:
| Q |
2 |
ggcaatggggtgggatctctgtatgtgttgctgcttcactagcacttctgacatatttccaaagcagaataaattgaattggcaaatcttcccctatgag |
101 |
Q |
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| T |
30935454 |
ggcaatggggtgggatctctgtatgtgctgctgcttcactagcacttctgacatatttccaaagcagaataaattgaagtggcaaatcttcccctatgag |
30935355 |
T |
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| Q |
102 |
caacttagaaaagccacaaattattttgatgaagctcacattcttgaaaagaaaagctctgccactatatattatggtaagaagtctttcacctgaaaaa |
201 |
Q |
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| T |
30935354 |
ctacttaggaaagccacaaattattttgatgaagctcacattcttgaaaagaaaggctctgccactatatattatggtaagcggtcttttacctgaaaaa |
30935255 |
T |
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| Q |
202 |
atgaatgaatgaacagacgagataatctctgaatttgtaactatcgttctatttagtctttgaattttttgaaagatcacaatagacgttgggtttattt |
301 |
Q |
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| |||||||||| |||| ||||| ||||||||||||||| |||||||| ||||||||||||||||||| | ||||||||| ||||| |||||||||||| |
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| T |
30935254 |
a--aatgaatgaatagacaagatagtctctgaatttgtaaatatcgttcaatttagtctttgaatttttcgtaagatcacagtagactttgggtttattt |
30935157 |
T |
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| Q |
302 |
tgcgttattcagtttcatct |
321 |
Q |
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| T |
30935156 |
tgcgttatttggtttcatct |
30935137 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 139; E-Value: 1e-72
Query Start/End: Original strand, 5 - 258
Target Start/End: Complemental strand, 30994360 - 30994106
Alignment:
| Q |
5 |
aatggggtgggatctctgtatgtgttgctgcttcactagcacttctgacatatttccaaagcagaataaattgaattggcaaatcttcccctatgagcaa |
104 |
Q |
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| T |
30994360 |
aatgaggtgggatatctgtatgtgttgctgcttcactagcacatctgaaacatttccaaagcagagtaaattgaattggcaaatcttcccatatgagcaa |
30994261 |
T |
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| Q |
105 |
cttagaaaagccacaaattattttgatgaagctcacattcttgaaaagaaaagctctgccactatatattatggtaagaagtctttcacctga-aaaaat |
203 |
Q |
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| T |
30994260 |
cttagaaaagccacaaattattttgatgaagctcacattcttgataagaaaggctcgcccactgtatattatggtaagaagtgttttacctgataaaaaa |
30994161 |
T |
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| Q |
204 |
gaatgaatgaacagacgagataatctctgaatttgtaactatcgttctatttagt |
258 |
Q |
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||| |||| ||| | || ||||||| |||||||||||||||| ||||||| |
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| T |
30994160 |
ctttgagtgaatagaaaatttagtctctgagtttgtaactatcgttcaatttagt |
30994106 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 111 - 271
Target Start/End: Complemental strand, 30965507 - 30965348
Alignment:
| Q |
111 |
aaagccacaaattattttgatgaagctcacattcttgaaaagaaaagctctgccactatatattatggtaagaagtctttcacctgaaaaaatgaatgaa |
210 |
Q |
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||||||||| ||||||||||| ||||||||||||||||||||| | |||| |||||| |||||||||||||||||||||| || |||||||| ||| |
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| T |
30965507 |
aaagccacatattattttgatcaagctcacattcttgaaaagagaggctcggccactgtatattatggtaagaagtcttttacatgaaaaaa-atttgag |
30965409 |
T |
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| Q |
211 |
tgaacagacgagataatctctgaatttgtaactatcgttctatttagtctttgaatttttt |
271 |
Q |
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|||| ||| | || ||||||||||||||||||| | || ||||||| | |||||||||| |
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| T |
30965408 |
tgaatagaaaatttagtctctgaatttgtaactattggtcaatttagtttctgaatttttt |
30965348 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 5 - 66
Target Start/End: Complemental strand, 30965564 - 30965503
Alignment:
| Q |
5 |
aatggggtgggatctctgtatgtgttgctgcttcactagcacttctgacatatttccaaagc |
66 |
Q |
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|||| |||| ||||||| |||||| ||||||||||||||||||||||| | ||||||||||| |
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| T |
30965564 |
aatgaggtgagatctctctatgtgctgctgcttcactagcacttctgaaacatttccaaagc |
30965503 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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