View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4202_low_9 (Length: 318)
Name: NF4202_low_9
Description: NF4202
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4202_low_9 |
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Alignment Details
Target: chr2 (Bit Score: 257; Significance: 1e-143; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 257; E-Value: 1e-143
Query Start/End: Original strand, 19 - 303
Target Start/End: Original strand, 2344277 - 2344561
Alignment:
| Q |
19 |
gaagatggtgttttatcatctgattttatggttggacttctcatggcttctccaatatttgtgtctctagctaagaggtaattaggatagccattcgtgt |
118 |
Q |
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| T |
2344277 |
gaagatggtgttttatcatctgattttatggttggacttctcatggcttctccaatatttgcgtctctagctaagaggtaattaggatagccattcgtgt |
2344376 |
T |
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| Q |
119 |
tgcaatcagtttgaaacctattcatattattagatacttttgttactttaaacattaaatgtcataagaatcctttctcacaattcatgtattttgcagt |
218 |
Q |
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|||||||||||||||||||||||||| |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
2344377 |
tgcaatcagtttgaaacctattcatactattagatacttttgttagcttaaacattaaatgtcataagaatcctttctcacaattcatgtatttcgcagt |
2344476 |
T |
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| Q |
219 |
gtcaatccatttagacttataggatctggattgtcaatttggacactagcaaccttcttctgtggtttttcttttaatttctggt |
303 |
Q |
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| T |
2344477 |
gtcaatccatttaaacttataggatccggattgtcaatttggacactagcaaccttcttctgtggtttttcttttaatttctggt |
2344561 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 19 - 154
Target Start/End: Original strand, 2337027 - 2337162
Alignment:
| Q |
19 |
gaagatggtgttttatcatctgattttatggttggacttctcatggcttctccaatatttgtgtctctagctaagaggtaattaggatagccattcgtgt |
118 |
Q |
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| T |
2337027 |
gaagatggagttttgtcatctgcttttatggttggacttctcgtggcttctccaatatttgcctctctagctcagaggtaattagaataaccattcatgt |
2337126 |
T |
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| Q |
119 |
tgcaatcagtttgaaacctattcatattattagata |
154 |
Q |
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| T |
2337127 |
tccaatcaatatgaaacctattcttattattagata |
2337162 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 69; E-Value: 6e-31
Query Start/End: Original strand, 171 - 303
Target Start/End: Original strand, 2337536 - 2337668
Alignment:
| Q |
171 |
cattaaatgtcataagaatcctttctcacaattcatgtattttgcagtgtcaatccatttagacttataggatctggattgtcaatttggacactagcaa |
270 |
Q |
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|||||| || |||||||||||||||||||||||||| ||||||||||||| ||||||||||||||| ||||| ||||||||| | ||||| || || | |
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| T |
2337536 |
cattaactgacataagaatcctttctcacaattcatatattttgcagtgtaaatccatttagacttgtaggagttggattgtcggtgtggactcttgcga |
2337635 |
T |
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| Q |
271 |
ccttcttctgtggtttttcttttaatttctggt |
303 |
Q |
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| T |
2337636 |
ccttcttttgcggtttttctttcaatttctggt |
2337668 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 21 - 154
Target Start/End: Original strand, 2323964 - 2324097
Alignment:
| Q |
21 |
agatggtgttttatcatctgattttatggttggacttctcatggcttctccaatatttgtgtctctagctaagaggtaattaggatagccattcgtgttg |
120 |
Q |
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|||||| ||||||||||||| |||||||| ||||||||| |||||||||||||||||| | ||||||| ||||||||||| || |||||| |||| |
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| T |
2323964 |
agatggagttttatcatctgcttttatgggtggacttcttgtggcttctccaatatttgcatttctagctcagaggtaattaatgtaaccattcatgttc |
2324063 |
T |
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| Q |
121 |
caatcagtttgaaacctattcatattattagata |
154 |
Q |
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|||||| |||||||||||| || |||| |||| |
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| T |
2324064 |
caatcaaagtgaaacctattcttagtattcgata |
2324097 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 208 - 303
Target Start/End: Complemental strand, 36798802 - 36798707
Alignment:
| Q |
208 |
tattttgcagtgtcaatccatttagacttataggatctggattgtcaatttggacactagcaaccttcttctgtggtttttcttttaatttctggt |
303 |
Q |
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||||||||||||| || || ||||||||||| ||| |||||||||| ||||||| | |||||||| | ||||||| ||||||| |||||||||| |
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| T |
36798802 |
tattttgcagtgtaaacccctttagacttattggagttggattgtcagtttggactgttgcaaccttatgctgtggtctttctttcaatttctggt |
36798707 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 20 - 79
Target Start/End: Complemental strand, 36799390 - 36799331
Alignment:
| Q |
20 |
aagatggtgttttatcatctgattttatggttggacttctcatggcttctccaatatttg |
79 |
Q |
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||||||| ||| | ||||||| |||||||||||||||||| || |||||||||||||||| |
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| T |
36799390 |
aagatggagttctttcatctgcttttatggttggacttcttatagcttctccaatatttg |
36799331 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 32; Significance: 0.000000007; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 20 - 79
Target Start/End: Complemental strand, 12969681 - 12969622
Alignment:
| Q |
20 |
aagatggtgttttatcatctgattttatggttggacttctcatggcttctccaatatttg |
79 |
Q |
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||||||||||||| ||||||| ||||||||||||||| | || ||||||||||| |||| |
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| T |
12969681 |
aagatggtgttttgtcatctgcatttatggttggacttttaattgcttctccaatttttg |
12969622 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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