View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4203_high_2 (Length: 658)
Name: NF4203_high_2
Description: NF4203
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4203_high_2 |
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Alignment Details
Target: chr4 (Bit Score: 458; Significance: 0; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 458; E-Value: 0
Query Start/End: Original strand, 13 - 536
Target Start/End: Complemental strand, 51961295 - 51960760
Alignment:
| Q |
13 |
aatattgcatggttgttcaatgatgttatatcacacgtttgaatgttgtgactctatcactatagtactatgctcgagttgtaaataacaaaatccaaat |
112 |
Q |
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| T |
51961295 |
aatattgcatggttgttcaatgatgttatatcacatgtttgaatgttgtgactctatcactatagtactatgctcgagttgtaaataagaaaatccaaat |
51961196 |
T |
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| Q |
113 |
ccttgagaaagtaataaatttacatcattacaaaaggatcgatgt----tgttctgtcaataagaaagactctgcttaaattaaaggtgtagctttccat |
208 |
Q |
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| T |
51961195 |
ccttgagaaagtaataaatttacatcattacaaaaggatcgatgtacgttgctctatcaataagaaagactctggttaaattaaaggtgtagctttccat |
51961096 |
T |
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| Q |
209 |
cctctcctagatcacggaagcagattctactcttttgtctcaaagtctaaatctattagacacataagttcgtcatatacaccgaagaagattcttcact |
308 |
Q |
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| T |
51961095 |
cctctcctagatcacggaagcagattctactcttttgtctcaaagtctaaatctattagacacataatttcgtcatatacaccgaagaagattcttcact |
51960996 |
T |
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| Q |
309 |
ttgagcaaaaaccttcaacttcttgtttaagtgtcaatttctggtgacatgcaacagtgtagtatccaacaataatattactcattcttcattcagtaat |
408 |
Q |
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| T |
51960995 |
ttgagcaaaaaccttcaacttcttgtttaagtgtcaatttctggtgacatgcaacagtgtagtgtccaacaataatattactcattcttcattcagtaat |
51960896 |
T |
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| Q |
409 |
tacggtgagtagtaaacttttgatcttactctatc--------atcacaatcacataactaaattaaagagacacactagcaagggagacaaaggtaagt |
500 |
Q |
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| T |
51960895 |
tacggtgagtagtaaacttttgatcttactctatcatcagttcatcacaatcacataactaaattaaagagacacgctagcaagggagacaaaggtaagt |
51960796 |
T |
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| Q |
501 |
gcctgtactcaaactaatatgtactcccataatatt |
536 |
Q |
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| T |
51960795 |
gcctgtactcaaactaatatgtactcccataatatt |
51960760 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 590 - 641
Target Start/End: Complemental strand, 51960746 - 51960699
Alignment:
| Q |
590 |
gtttgccctaaaattgttcacatgcatggttccaaagaaattatactttatg |
641 |
Q |
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| T |
51960746 |
gtttgccctaaaattgttcacatg----gttccaaagaaattatactttatg |
51960699 |
T |
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