View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4203_high_5 (Length: 365)
Name: NF4203_high_5
Description: NF4203
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4203_high_5 |
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Alignment Details
Target: chr3 (Bit Score: 226; Significance: 1e-124; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 226; E-Value: 1e-124
Query Start/End: Original strand, 17 - 254
Target Start/End: Complemental strand, 46238740 - 46238503
Alignment:
| Q |
17 |
caaacaacataacaagttcacatcaattaaaaaccctaaaaaattcacaacttctttaacgttttcctccttttcctcgttaacagtaccacaacaagaa |
116 |
Q |
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| T |
46238740 |
caaacaacataacaagttcacatcaattaaaaaccctaaaaaattcacaacatctttaacgttttcctccttttcctcgttaacagtaccacaacaagaa |
46238641 |
T |
|
| Q |
117 |
taaacaaagaaatagcatgcatattcataggagtaaagggaggaaagtaaagggattcacataatagacaacttacatcagcaactggagctccaacgtt |
216 |
Q |
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||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
46238640 |
taaacaaagaaatagcatgcatattcataggagtaaacagaggaaagtaaagggattcacataatagacaacttacatcagcaactggagctccaacgtt |
46238541 |
T |
|
| Q |
217 |
tttcataaccgtcgattgtccttcgatcgtttcatgca |
254 |
Q |
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|||||||||||||||||||||||||||||||||||||| |
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| T |
46238540 |
tttcataaccgtcgattgtccttcgatcgtttcatgca |
46238503 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 206; Significance: 1e-112; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 206; E-Value: 1e-112
Query Start/End: Original strand, 17 - 254
Target Start/End: Original strand, 3455918 - 3456155
Alignment:
| Q |
17 |
caaacaacataacaagttcacatcaattaaaaaccctaaaaaattcacaacttctttaacgttttcctccttttcctcgttaacagtaccacaacaagaa |
116 |
Q |
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|||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3455918 |
caaacaacataacaagttcacatcaatttaaaaccctaaaaaattcacaacttctttaacgttttcctccttttcctcgttaacagtaccacaacaagaa |
3456017 |
T |
|
| Q |
117 |
taaacaaagaaatagcatgcatattcataggagtaaagggaggaaagtaaagggattcacataatagacaacttacatcagcaactggagctccaacgtt |
216 |
Q |
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|||||||||||||||||||||||||| |||||||||| || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3456018 |
taaacaaagaaatagcatgcatattcttaggagtaaacagaagaaagtaaagggattcacataatagacaacttacatcagcaactggagctccaacgtt |
3456117 |
T |
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| Q |
217 |
tttcataaccgtcgattgtccttcgatcgtttcatgca |
254 |
Q |
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|||||||||||||||||| |||||||| ||||| |||| |
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| T |
3456118 |
tttcataaccgtcgattgcccttcgattgtttcctgca |
3456155 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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