View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4203_high_6 (Length: 351)

Name: NF4203_high_6
Description: NF4203
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4203_high_6
NF4203_high_6
[»] scaffold0001 (1 HSPs)
scaffold0001 (211-331)||(12444-12564)
[»] chr6 (3 HSPs)
chr6 (203-333)||(11681970-11682100)
chr6 (245-334)||(18985578-18985667)
chr6 (286-333)||(11681842-11681889)
[»] chr5 (1 HSPs)
chr5 (245-334)||(23919850-23919939)
[»] chr8 (1 HSPs)
chr8 (245-334)||(30344110-30344199)
[»] chr7 (5 HSPs)
chr7 (203-284)||(25350428-25350509)
chr7 (203-284)||(25356122-25356203)
chr7 (272-333)||(33098112-33098173)
chr7 (286-333)||(25350264-25350311)
chr7 (286-333)||(25355958-25356005)
[»] chr4 (2 HSPs)
chr4 (203-290)||(1967812-1967899)
chr4 (288-333)||(1967593-1967638)


Alignment Details
Target: scaffold0001 (Bit Score: 101; Significance: 5e-50; HSPs: 1)
Name: scaffold0001
Description:

Target: scaffold0001; HSP #1
Raw Score: 101; E-Value: 5e-50
Query Start/End: Original strand, 211 - 331
Target Start/End: Original strand, 12444 - 12564
Alignment:
Q  211 tgagcgtaacaaagctgaaaaatccttgagaggaggttggttccaatttgttagggacaatcacctacaagagggcgacaagctgctatttgatttaggt 310  Q
    |||||||||||||||||||||||||||| ||||||||||||| |||||||||||||||||| |||||||||||||||||||||||||||| |||||||||    
T  12444 tgagcgtaacaaagctgaaaaatccttgggaggaggttggttacaatttgttagggacaattacctacaagagggcgacaagctgctattcgatttaggt 12543  T
Q  311 gttcctcctacagtgttgttt 331  Q
    |||||||||||| ||||||||    
T  12544 gttcctcctacaatgttgttt 12564  T

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Target: chr6 (Bit Score: 83; Significance: 3e-39; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 83; E-Value: 3e-39
Query Start/End: Original strand, 203 - 333
Target Start/End: Complemental strand, 11682100 - 11681970
Alignment:
Q  203 attaccgttgagcgtaacaaagctgaaaaatccttgagaggaggttggttccaatttgttagggacaatcacctacaagagggcgacaagctgctatttg 302  Q
    ||||||| |||||||||||| ||||||||||||||| |||||||||||||||| |||||||||||||||||||||||||||| |||||||  ||||||||    
T  11682100 attaccgctgagcgtaacaaggctgaaaaatccttgggaggaggttggttccagtttgttagggacaatcacctacaagaggacgacaagtagctatttg 11682001  T
Q  303 atttaggtgttcctcctacagtgttgtttgt 333  Q
    |||| |||||   ||||||| ||||||||||    
T  11682000 atttgggtgtctttcctacaatgttgtttgt 11681970  T

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Target: chr6; HSP #2
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 245 - 334
Target Start/End: Complemental strand, 18985667 - 18985578
Alignment:
Q  245 ggttggttccaatttgttagggacaatcacctacaagagggcgacaagctgctatttgatttaggtgttcctcctacagtgttgtttgtg 334  Q
    |||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |||||||||||||||||||||||||||||||||    
T  18985667 ggttggttccaatttgttagggacaatcacctacaagaggacgacaagctgctattcgatttaggtgttcctcctacagtgttgtttgtg 18985578  T

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Target: chr6; HSP #3
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 286 - 333
Target Start/End: Complemental strand, 11681889 - 11681842
Alignment:
Q  286 cgacaagctgctatttgatttaggtgttcctcctacagtgttgtttgt 333  Q
    ||||||||||||||||||||||||||||||||||||| ||||||||||    
T  11681889 cgacaagctgctatttgatttaggtgttcctcctacaatgttgtttgt 11681842  T

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Target: chr5 (Bit Score: 82; Significance: 1e-38; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 245 - 334
Target Start/End: Original strand, 23919850 - 23919939
Alignment:
Q  245 ggttggttccaatttgttagggacaatcacctacaagagggcgacaagctgctatttgatttaggtgttcctcctacagtgttgtttgtg 334  Q
    |||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |||||||||||||||||||||||||||||||||    
T  23919850 ggttggttccaatttgttagggacaatcacctacaagaggacgacaagctgctattcgatttaggtgttcctcctacagtgttgtttgtg 23919939  T

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Target: chr8 (Bit Score: 78; Significance: 3e-36; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 245 - 334
Target Start/End: Original strand, 30344110 - 30344199
Alignment:
Q  245 ggttggttccaatttgttagggacaatcacctacaagagggcgacaagctgctatttgatttaggtgttcctcctacagtgttgtttgtg 334  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |||||||||||| ||||||||||||||||||||    
T  30344110 ggttggttccaatttgttagggacaatcacctacaagagggcgacaagctgttattcgatttaggtgttactcctacagtgttgtttgtg 30344199  T

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Target: chr7 (Bit Score: 62; Significance: 1e-26; HSPs: 5)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 203 - 284
Target Start/End: Complemental strand, 25350509 - 25350428
Alignment:
Q  203 attaccgttgagcgtaacaaagctgaaaaatccttgagaggaggttggttccaatttgttagggacaatcacctacaagagg 284  Q
    ||||||| |||||||||||| ||||||||||||||| || ||||||||||||| ||||||||||||||||||||||||||||    
T  25350509 attaccgctgagcgtaacaaggctgaaaaatccttgggaagaggttggttccagtttgttagggacaatcacctacaagagg 25350428  T

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Target: chr7; HSP #2
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 203 - 284
Target Start/End: Complemental strand, 25356203 - 25356122
Alignment:
Q  203 attaccgttgagcgtaacaaagctgaaaaatccttgagaggaggttggttccaatttgttagggacaatcacctacaagagg 284  Q
    ||||||| |||||||||||| ||||||||||||||| || ||||||||||||| ||||||||||||||||||||||||||||    
T  25356203 attaccgctgagcgtaacaaggctgaaaaatccttgggaagaggttggttccagtttgttagggacaatcacctacaagagg 25356122  T

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Target: chr7; HSP #3
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 272 - 333
Target Start/End: Complemental strand, 33098173 - 33098112
Alignment:
Q  272 cacctacaagagggcgacaagctgctatttgatttaggtgttcctcctacagtgttgtttgt 333  Q
    |||||||||||||| |||||||||||||| ||||| | ||||||||||||| ||||||||||    
T  33098173 cacctacaagagggtgacaagctgctattcgatttggatgttcctcctacaatgttgtttgt 33098112  T

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Target: chr7; HSP #4
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 286 - 333
Target Start/End: Complemental strand, 25350311 - 25350264
Alignment:
Q  286 cgacaagctgctatttgatttaggtgttcctcctacagtgttgtttgt 333  Q
    |||||||||||| || ||||| |||||||||||| |||||||||||||    
T  25350311 cgacaagctgcttttcgatttgggtgttcctcctgcagtgttgtttgt 25350264  T

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Target: chr7; HSP #5
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 286 - 333
Target Start/End: Complemental strand, 25356005 - 25355958
Alignment:
Q  286 cgacaagctgctatttgatttaggtgttcctcctacagtgttgtttgt 333  Q
    |||||||||||| || ||||| |||||||||||| |||||||||||||    
T  25356005 cgacaagctgcttttcgatttgggtgttcctcctgcagtgttgtttgt 25355958  T

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Target: chr4 (Bit Score: 52; Significance: 9e-21; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 203 - 290
Target Start/End: Complemental strand, 1967899 - 1967812
Alignment:
Q  203 attaccgttgagcgtaacaaagctgaaaaatccttgagaggaggttggttccaatttgttagggacaatcacctacaagagggcgaca 290  Q
    ||||||| ||||||||||||   ||||||||| ||| |||||||||||||||| |||||||||||||| ||||||||||||| |||||    
T  1967899 attaccgctgagcgtaacaagcttgaaaaatcattgggaggaggttggttccagtttgttagggacaaccacctacaagaggacgaca 1967812  T

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Target: chr4; HSP #2
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 288 - 333
Target Start/End: Complemental strand, 1967638 - 1967593
Alignment:
Q  288 acaagctgctatttgatttaggtgttcctcctacagtgttgtttgt 333  Q
    ||||||||||||||||||| ||||||||||||||||||||||||||    
T  1967638 acaagctgctatttgatttgggtgttcctcctacagtgttgtttgt 1967593  T

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