View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4203_high_7 (Length: 343)
Name: NF4203_high_7
Description: NF4203
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4203_high_7 |
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Alignment Details
Target: chr7 (Bit Score: 255; Significance: 1e-142; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 255; E-Value: 1e-142
Query Start/End: Original strand, 26 - 334
Target Start/End: Original strand, 35454319 - 35454627
Alignment:
| Q |
26 |
cgttcacaaactgtgagttgggtttgtataagtgattcatgtcgctgaagcaacatcgatgtttcgactggcctctatgatatttccatcaacaccaaat |
125 |
Q |
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| T |
35454319 |
cgttcacaaactgtgagttgggtttgtagaagtgactcgtgtcgctgaagcaacatcgatgtttcgactggcctctatgatatttccatcaacaccaaac |
35454418 |
T |
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| Q |
126 |
atgtgag--gagaaaaacttgaatattaaaattctgatatgctcatctccccactgcttccttttttagacccatgtttgagttatgagtattacaa-gg |
222 |
Q |
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| T |
35454419 |
atgtgaggagagaaaaacttgaatattaaaattctgatatgctcatcgccccactgcttccttttttagacccatgtttgagttatgagtattacaaggg |
35454518 |
T |
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| Q |
223 |
aatgcttgaaatatctccatgagcagacttatcaaccataccaaatgataatccaccgttattgatgatatattagataaactggaatccaaaccttata |
322 |
Q |
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| T |
35454519 |
aatgcttgaaatatctccatgagcagacttatcaaccataccaaatgataatccaccgttat---tgatatattaggtaaactggaatccaaaccttata |
35454615 |
T |
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| Q |
323 |
gaatattttctt |
334 |
Q |
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| T |
35454616 |
gaatattttctt |
35454627 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 108 - 276
Target Start/End: Original strand, 35440921 - 35441087
Alignment:
| Q |
108 |
tttccatcaacaccaaatatgtgaggagaaaaacttgaatattaaaattctgatatgctcatctccccactgcttcctttttt-agacccatgtttgagt |
206 |
Q |
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| T |
35440921 |
tttccatcagcaccaaacatgtgaggagaaaaacttgaattatcaggtttggatatggtcattcccccattaactccttgttgcatacccatgtttgagt |
35441020 |
T |
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| Q |
207 |
tatgagtattacaaggaatgcttgaaatatctccatgagcagacttatcaaccataccaaatgataatcc |
276 |
Q |
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| T |
35441021 |
tctgagtaa---aagtcatgcttggaatatctccatgagcagacgtatcaaccataccaaatgatgatcc |
35441087 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 102 - 269
Target Start/End: Original strand, 35448935 - 35449100
Alignment:
| Q |
102 |
atgatatttccatcaacaccaaatatgtgaggagaaaaacttgaatattaaaattctgatatgctcatctccccactgcttccttttttaga-cccatgt |
200 |
Q |
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|||| |||| ||||||||||||| ||| ||||||| |||||| ||||| | ||||| |||| |||| ||||| | |||||| || | | ||||||| |
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| T |
35448935 |
atgacattttcatcaacaccaaacatgctaggagaagaacttggatattcaggttctgttatggccatccccccattaattccttgttgaaaacccatgt |
35449034 |
T |
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| Q |
201 |
ttgagttatgagtattacaaggaatgcttgaaatatctccatgagcagacttatcaaccataccaaatg |
269 |
Q |
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| T |
35449035 |
tcgagttctgactat---aatgcatgcttgaaaaatctccatgagcagacatatcaaccatacgaaatg |
35449100 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 48; Significance: 2e-18; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 190 - 285
Target Start/End: Original strand, 51575288 - 51575383
Alignment:
| Q |
190 |
tagacccatgtttgagttatgagtattacaaggaatgcttgaaatatctccatgagcagacttatcaaccataccaaatgataatccaccgttatt |
285 |
Q |
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|||||||||||||||||| |||||||| |||| |||||||||||||| ||| ||| |||| ||||||||||||||||||| | |||||| |||| |
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| T |
51575288 |
tagacccatgtttgagttccgagtattataaggcatgcttgaaatatcaccacgaggagacacatcaaccataccaaatgatgaaccaccgctatt |
51575383 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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