View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF4203_low_1 (Length: 762)
Name: NF4203_low_1
Description: NF4203
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4203_low_1 |
 | |
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Alignment Details
Target: chr8 (Bit Score: 299; Significance: 1e-168; HSPs: 5)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 299; E-Value: 1e-168
Query Start/End: Original strand, 1 - 331
Target Start/End: Original strand, 32926468 - 32926798
Alignment:
| Q |
1 |
aagtgagttatgtgacatatcgtgggtttaaaggaacttatgccggtgatttatccattaatctggattgtatgagttgtttcaatgttgtattggatca |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32926468 |
aagtgagttatgtgacatatcgtgggtttaaaggatagtatgccggtgatttagccattaatctggattgtatgagttgtttcaatgttgtattggatca |
32926567 |
T |
|
| Q |
101 |
agtttacattttctcttctcaagagaaaaaagaggttcgttccttttgcaaaaactttcatggaacaattggctccactattccaagagtctattgcaaa |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
32926568 |
agtttacattttctcttctcaagagaaaaaagagtttcattccttttgcaaaaactttcatggaacaattggctccactattccaagagtctattgcaaa |
32926667 |
T |
|
| Q |
201 |
taaaatgtttgaatcattaattagttgccatagtaaaaagttatgtcataattgtatcacatatcaagcttcaatgatagttgtaaaaatttatcaagtt |
300 |
Q |
| |
|
||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
32926668 |
taaaacgtttgaataattaattagttgccatagtaaaaagttatgtcataattgtatcacatatcaagcttcaatgatagttgtaaaaatttatcaagtt |
32926767 |
T |
|
| Q |
301 |
gcaatgtaatataccatttctaatcaaataa |
331 |
Q |
| |
|
||||||||||||||||||||||||||||||| |
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|
| T |
32926768 |
gcaatgtaatataccatttctaatcaaataa |
32926798 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 188; E-Value: 1e-101
Query Start/End: Original strand, 510 - 751
Target Start/End: Original strand, 32927005 - 32927244
Alignment:
| Q |
510 |
tcgaggacaaattgtt-acttttttactactatgaataatttgtctttaacaacggtgaaaaaagtacaacatctgcaagtcaaacacaatcaccaaact |
608 |
Q |
| |
|
|||||||||||||||| ||||||| |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
32927005 |
tcgaggacaaattgttcactttttcacta---tgaataatttgtctttaacaacggtgaaaaaagtacaacatctgcaagtcaaacacaatcaccaaact |
32927101 |
T |
|
| Q |
609 |
cagttcattcacgttttcagtaaatggaagcaaagagttcaatcnnnnnnnaaccaaattaagcacagaaaattccaaaaacacatgaataataagataa |
708 |
Q |
| |
|
|||||||||||||||| ||||||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||||||||||||||||| |
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|
| T |
32927102 |
cagttcattcacgtttgcagtaaatggaagcaaagagttcaatctttttttaaccaaatgaagcacagaaaattccaaaaacacatgaataataagataa |
32927201 |
T |
|
| Q |
709 |
acataacacatgaataataatagtatatatcaaaatgatgatg |
751 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
32927202 |
acataacacatgaataataatagtatatatcaaaatgatgatg |
32927244 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 107; E-Value: 3e-53
Query Start/End: Original strand, 359 - 513
Target Start/End: Original strand, 32926812 - 32926966
Alignment:
| Q |
359 |
atttgattgtatttggtaaagatgcgtctctagcacaaagcttcaaattacgtcaaaatagagaatgtattccgcatatatataaacggtgtgatgtggt |
458 |
Q |
| |
|
||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||| ||||| | |||||||||||||| |
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|
| T |
32926812 |
atttgattgtatttggtaaagatgcgtctctaggacaaagcttcaaattacatcaaaatagagaatgtattccatatataaacggccggtgtgatgtggt |
32926911 |
T |
|
| Q |
459 |
aaaataaagaaaagtgaagatcaaatttaatacttcacaatttttaataggtcga |
513 |
Q |
| |
|
||||||||||| ||||||||||||||||||| ||||| ||||||||||||||||| |
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|
| T |
32926912 |
aaaataaagaagagtgaagatcaaatttaatccttcataatttttaataggtcga |
32926966 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 82; E-Value: 3e-38
Query Start/End: Original strand, 1 - 205
Target Start/End: Complemental strand, 11657508 - 11657303
Alignment:
| Q |
1 |
aagtgagttatgtgacatatcgtgggtttaaaggaacttatgccggtgatttatccattaatctggattgtatgagttgtttcaatgttgtattggatca |
100 |
Q |
| |
|
|||||| | |||||||||||||||| ||||| |||| ||| ||||| ||| | ||||||||| |||| | ||||||||||||| ||||||| ||||| |
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|
| T |
11657508 |
aagtgactaatgtgacatatcgtggatttaatggaagttacattggtgacttagctattaatctgaattgcacgagttgtttcaatattgtattagatca |
11657409 |
T |
|
| Q |
101 |
agtttacattttctcttctcaaga-gaaaaaagaggttcgttccttttgcaaaaactttcatggaacaattggctccactattccaagagtctattgcaa |
199 |
Q |
| |
|
|||||||||||| ||||||||||| |||||||||||| | ||||||||||||||| ||||||||||||||||||| | ||| |||||| |||| ||| |
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|
| T |
11657408 |
agtttacattttatcttctcaagataaaaaaagaggttaatgtcttttgcaaaaacttccatggaacaattggctccaatgttctaagagtatattacaa |
11657309 |
T |
|
| Q |
200 |
ataaaa |
205 |
Q |
| |
|
|||||| |
|
|
| T |
11657308 |
ataaaa |
11657303 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 1 - 171
Target Start/End: Original strand, 2526173 - 2526343
Alignment:
| Q |
1 |
aagtgagttatgtgacatatcgtgggtttaaaggaacttatgccggtgatttatccattaatctggattgtatgagttgtttcaatgttgtattggatca |
100 |
Q |
| |
|
|||||| | |||||||||||||||| ||||| ||||||| |||||||||| | | ||| || ||||||| ||| ||||||||| ||||||||||||| |
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|
| T |
2526173 |
aagtgaatgatgtgacatatcgtggatttaacggaacttgtgccggtgatattgctattgatttggattgcatggattgtttcaacattgtattggatca |
2526272 |
T |
|
| Q |
101 |
agtttacattttctcttctcaagagaaaaaagaggttcgttccttttgcaaaaactttcatggaacaattg |
171 |
Q |
| |
|
| || ||||| ||||||||||| ||| ||| ||||| | | |||||||||| || ||||||| ||||| |
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|
| T |
2526273 |
aattaacattgtctcttctcaaaagagaaataaggtttctgctatttgcaaaaatttccatggaaaaattg |
2526343 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 54; Significance: 1e-21; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 201 - 309
Target Start/End: Original strand, 29271831 - 29271940
Alignment:
| Q |
201 |
taaaatgtttgaatcattaattagttgccata-gtaaaaagttatgtcataattgtatcacatatcaagcttcaatgatagttgtaaaaatttatcaagt |
299 |
Q |
| |
|
||||||||| ||||||||| || ||||||||| |||||||||||||||||||| ||||| |||||| |||||||| ||||||||||||||||||| | |
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|
| T |
29271831 |
taaaatgttagaatcattagttggttgccatatgtaaaaagttatgtcataatcgtatcttgtatcaaatttcaatgagagttgtaaaaatttatcaaat |
29271930 |
T |
|
| Q |
300 |
tgcaatgtaa |
309 |
Q |
| |
|
||||||||| |
|
|
| T |
29271931 |
cgcaatgtaa |
29271940 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 33; Significance: 0.000000004; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 201 - 252
Target Start/End: Original strand, 9446467 - 9446519
Alignment:
| Q |
201 |
taaaatgtttgaatcattaattagttgccata-gtaaaaagttatgtcataat |
252 |
Q |
| |
|
||||||||| ||||||||||| ||||||||| |||||||||||||||||||| |
|
|
| T |
9446467 |
taaaatgttataatcattaattggttgccatatgtaaaaagttatgtcataat |
9446519 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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