View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4203_low_13 (Length: 251)
Name: NF4203_low_13
Description: NF4203
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4203_low_13 |
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Alignment Details
Target: chr2 (Bit Score: 223; Significance: 1e-123; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 223; E-Value: 1e-123
Query Start/End: Original strand, 1 - 238
Target Start/End: Original strand, 6387243 - 6387481
Alignment:
| Q |
1 |
tataatatata-ctattatagcatgtggctggcacagggaaattgagcagcagtagaagaagcttaagattgaaagtacttacaaaattttgggtgcggc |
99 |
Q |
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| T |
6387243 |
tataatatataactattctagcatgtggctggcacaggaaaattgagcagcagtagaagaagcttaagattgaaagtacttacaaaattttgggtgcggc |
6387342 |
T |
|
| Q |
100 |
tggtccagtgaactacaaggttagtcatgtttccaatgatgtatgctgttaaacccaagttgaatagcatgtaagtgatatcaaacaacatctctatggt |
199 |
Q |
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| T |
6387343 |
tggtccagtgaactacaaggttagtcatgtttccaatgatgtatgctgttaaacccaagttgaatagcatgtaagtgatatcaaacaacatctctatggt |
6387442 |
T |
|
| Q |
200 |
gttctctgcatgtaaatctccatagccagtggtagtaag |
238 |
Q |
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| T |
6387443 |
gttctctgcatgtaaatctccatagccagtggtagtaag |
6387481 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 37; Significance: 0.000000000006; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 80 - 240
Target Start/End: Original strand, 18170659 - 18170819
Alignment:
| Q |
80 |
tacaaaattttgggtgcggctggtccagtgaactacaaggttagtcatgtttccaatgatgtatgctgttaaacccaagttgaatagcatgtaagtgata |
179 |
Q |
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| T |
18170659 |
tacaaaatttctggtgtgacttgtccattgaacaacaagatttgtcatgtttccaatgatataagctgttaatcccaagttgaacaacatatagccaatg |
18170758 |
T |
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| Q |
180 |
tcaaacaacatctctatggtgttctctgcatgtaaatctccatagccagtggtagtaagtg |
240 |
Q |
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| T |
18170759 |
tcaaacaacatctcctgagtgttattagcatgcaaatctccatatccagtagtagttagtg |
18170819 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 80 - 240
Target Start/End: Original strand, 18634227 - 18634387
Alignment:
| Q |
80 |
tacaaaattttgggtgcggctggtccagtgaactacaaggttagtcatgtttccaatgatgtatgctgttaaacccaagttgaatagcatgtaagtgata |
179 |
Q |
| |
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|||||||||| |||| | || ||||| ||||| ||||| || ||||||||||||||||| || |||||||| ||||||||||| | ||| || || |
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| T |
18634227 |
tacaaaatttctggtgtgacttgtccattgaacaacaagatttgtcatgtttccaatgatataagctgttaatcccaagttgaacaacatatagccaatg |
18634326 |
T |
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| Q |
180 |
tcaaacaacatctctatggtgttctctgcatgtaaatctccatagccagtggtagtaagtg |
240 |
Q |
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| T |
18634327 |
tcaaacaacatctcctgagtgttattagcatgcaaatctccatatccagtagtagttagtg |
18634387 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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