View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4203_low_17 (Length: 223)

Name: NF4203_low_17
Description: NF4203
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4203_low_17
NF4203_low_17
[»] chr5 (12 HSPs)
chr5 (6-188)||(588842-589024)
chr5 (187-223)||(42706899-42706935)
chr5 (185-223)||(589244-589283)
chr5 (189-223)||(40697102-40697136)
chr5 (186-223)||(13060558-13060595)
chr5 (186-223)||(24030307-24030344)
chr5 (186-223)||(29659153-29659190)
chr5 (186-223)||(41059745-41059782)
chr5 (186-223)||(41419594-41419631)
chr5 (187-223)||(35083333-35083369)
chr5 (186-222)||(42852114-42852150)
chr5 (186-222)||(43319096-43319132)
[»] chr7 (6 HSPs)
chr7 (57-108)||(31701350-31701401)
chr7 (186-223)||(33288031-33288068)
chr7 (186-223)||(33204927-33204964)
chr7 (186-223)||(43818834-43818871)
chr7 (186-223)||(47654370-47654407)
chr7 (186-222)||(48021605-48021641)
[»] chr4 (14 HSPs)
chr4 (186-223)||(8130572-8130609)
chr4 (193-223)||(17222929-17222959)
chr4 (189-223)||(18424234-18424268)
chr4 (185-223)||(34526293-34526331)
chr4 (193-223)||(43699405-43699435)
chr4 (186-223)||(488340-488377)
chr4 (186-223)||(825775-825812)
chr4 (186-223)||(12495600-12495637)
chr4 (186-223)||(14987556-14987593)
chr4 (186-223)||(36254992-36255029)
chr4 (186-223)||(42611825-42611862)
chr4 (186-223)||(42617186-42617223)
chr4 (187-223)||(34633484-34633520)
chr4 (191-223)||(43415244-43415276)
[»] chr8 (10 HSPs)
chr8 (185-223)||(31079122-31079160)
chr8 (186-223)||(25333657-25333694)
chr8 (189-223)||(25465803-25465837)
chr8 (189-223)||(34545577-34545611)
chr8 (186-223)||(16926684-16926721)
chr8 (186-223)||(25671846-25671883)
chr8 (186-223)||(28280802-28280839)
chr8 (182-219)||(32131529-32131566)
chr8 (186-223)||(32924169-32924206)
chr8 (186-223)||(38895752-38895789)
[»] chr2 (3 HSPs)
chr2 (186-223)||(8832550-8832587)
chr2 (193-223)||(7480855-7480885)
chr2 (186-223)||(44475475-44475512)
[»] chr1 (8 HSPs)
chr1 (189-222)||(12871432-12871465)
chr1 (192-223)||(14862932-14862963)
chr1 (192-223)||(14868484-14868515)
chr1 (186-223)||(3069810-3069847)
chr1 (186-223)||(48819392-48819429)
chr1 (186-223)||(49822829-49822866)
chr1 (187-223)||(37431228-37431264)
chr1 (191-223)||(37569560-37569592)
[»] chr6 (4 HSPs)
chr6 (188-223)||(10874079-10874114)
chr6 (186-223)||(9201677-9201714)
chr6 (186-223)||(9202355-9202392)
chr6 (186-223)||(32675845-32675882)
[»] chr3 (8 HSPs)
chr3 (193-223)||(22809149-22809179)
chr3 (186-223)||(3845947-3845984)
chr3 (186-223)||(7292770-7292807)
chr3 (186-223)||(10449070-10449107)
chr3 (186-223)||(40581032-40581069)
chr3 (186-223)||(42956135-42956172)
chr3 (189-222)||(43376791-43376824)
chr3 (195-223)||(30383867-30383895)
[»] scaffold0157 (1 HSPs)
scaffold0157 (186-223)||(24840-24877)


Alignment Details
Target: chr5 (Bit Score: 179; Significance: 9e-97; HSPs: 12)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 179; E-Value: 9e-97
Query Start/End: Original strand, 6 - 188
Target Start/End: Original strand, 588842 - 589024
Alignment:
Q  6 aaaaatatcaacttcgaattttttgctaacgttgtattttcatgacgaaatattgtgtttgaataagcttatgcttggttaagcttttgtacaattcaaa 105  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  588842 aaaaatatcaacttcgaattttttgctaacgttgtattttcatgacgaaatattgtgtttgaataagcttatgcttggttaagcttttgtacaattcaaa 588941  T
Q  106 tcatgcatcatttaccgtgatttagcggaagctacaagtagaaaacaaatagcctctaagtctgctattaagtagatcaatag 188  Q
    ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||    
T  588942 tcatgcatcatttaccgtgatttagcggaagctacaattagaaaacaaatagcctctaagtctgctattaagtagatcaatag 589024  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 187 - 223
Target Start/End: Original strand, 42706899 - 42706935
Alignment:
Q  187 agtgaaaacttatgaattaacataaaaacttatttat 223  Q
    ||||||||||||||||||||||| |||||||||||||    
T  42706899 agtgaaaacttatgaattaacattaaaacttatttat 42706935  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 185 - 223
Target Start/End: Original strand, 589244 - 589283
Alignment:
Q  185 atagtgaaaacttatgaattaacat-aaaaacttatttat 223  Q
    ||||||||||||||||||||||||| ||||||||||||||    
T  589244 atagtgaaaacttatgaattaacataaaaaacttatttat 589283  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 189 - 223
Target Start/End: Original strand, 40697102 - 40697136
Alignment:
Q  189 tgaaaacttatgaattaacataaaaacttatttat 223  Q
    ||||||||||||||||||||||||| |||||||||    
T  40697102 tgaaaacttatgaattaacataaaagcttatttat 40697136  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 186 - 223
Target Start/End: Complemental strand, 13060595 - 13060558
Alignment:
Q  186 tagtgaaaacttatgaattaacataaaaacttatttat 223  Q
    |||||| ||||||||||||||||||||| |||||||||    
T  13060595 tagtgagaacttatgaattaacataaaagcttatttat 13060558  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 186 - 223
Target Start/End: Original strand, 24030307 - 24030344
Alignment:
Q  186 tagtgaaaacttatgaattaacataaaaacttatttat 223  Q
    |||||| ||||||||||||||||||||| |||||||||    
T  24030307 tagtgagaacttatgaattaacataaaagcttatttat 24030344  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 186 - 223
Target Start/End: Original strand, 29659153 - 29659190
Alignment:
Q  186 tagtgaaaacttatgaattaacataaaaacttatttat 223  Q
    |||||| |||||||||||||| ||||||||||||||||    
T  29659153 tagtgagaacttatgaattaagataaaaacttatttat 29659190  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 186 - 223
Target Start/End: Complemental strand, 41059782 - 41059745
Alignment:
Q  186 tagtgaaaacttatgaattaacataaaaacttatttat 223  Q
    |||||| ||||||||||||||||||||| |||||||||    
T  41059782 tagtgagaacttatgaattaacataaaagcttatttat 41059745  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 186 - 223
Target Start/End: Original strand, 41419594 - 41419631
Alignment:
Q  186 tagtgaaaacttatgaattaacataaaaacttatttat 223  Q
    |||||| ||||||| |||||||||||||||||||||||    
T  41419594 tagtgagaacttatcaattaacataaaaacttatttat 41419631  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 187 - 223
Target Start/End: Original strand, 35083333 - 35083369
Alignment:
Q  187 agtgaaaacttatgaattaacataaaaacttatttat 223  Q
    ||||| ||||||||||||||||||||| |||||||||    
T  35083333 agtgagaacttatgaattaacataaaagcttatttat 35083369  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 186 - 222
Target Start/End: Original strand, 42852114 - 42852150
Alignment:
Q  186 tagtgaaaacttatgaattaacataaaaacttattta 222  Q
    |||||| ||||||||||||||||||||| ||||||||    
T  42852114 tagtgagaacttatgaattaacataaaagcttattta 42852150  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 186 - 222
Target Start/End: Original strand, 43319096 - 43319132
Alignment:
Q  186 tagtgaaaacttatgaattaacataaaaacttattta 222  Q
    |||||| |||||||||||||| |||||||||||||||    
T  43319096 tagtgagaacttatgaattaagataaaaacttattta 43319132  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 52; Significance: 6e-21; HSPs: 6)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 57 - 108
Target Start/End: Complemental strand, 31701401 - 31701350
Alignment:
Q  57 attgtgtttgaataagcttatgcttggttaagcttttgtacaattcaaatca 108  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  31701401 attgtgtttgaataagcttatgcttggttaagcttttgtacaattcaaatca 31701350  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 186 - 223
Target Start/End: Complemental strand, 33288068 - 33288031
Alignment:
Q  186 tagtgaaaacttatgaattaacataaaaacttatttat 223  Q
    ||||||||||||||||||||||||||||||||||||||    
T  33288068 tagtgaaaacttatgaattaacataaaaacttatttat 33288031  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 186 - 223
Target Start/End: Original strand, 33204927 - 33204964
Alignment:
Q  186 tagtgaaaacttatgaattaacataaaaacttatttat 223  Q
    |||||| ||||||||||||||||||||| |||||||||    
T  33204927 tagtgagaacttatgaattaacataaaagcttatttat 33204964  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 186 - 223
Target Start/End: Complemental strand, 43818871 - 43818834
Alignment:
Q  186 tagtgaaaacttatgaattaacataaaaacttatttat 223  Q
    |||||| |||||||||||||| ||||||||||||||||    
T  43818871 tagtgagaacttatgaattaagataaaaacttatttat 43818834  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 186 - 223
Target Start/End: Complemental strand, 47654407 - 47654370
Alignment:
Q  186 tagtgaaaacttatgaattaacataaaaacttatttat 223  Q
    |||||| |||||||||||||| ||||||||||||||||    
T  47654407 tagtgagaacttatgaattaagataaaaacttatttat 47654370  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 186 - 222
Target Start/End: Complemental strand, 48021641 - 48021605
Alignment:
Q  186 tagtgaaaacttatgaattaacataaaaacttattta 222  Q
    ||||||||||||||||||||| ||||||| |||||||    
T  48021641 tagtgaaaacttatgaattaatataaaaaattattta 48021605  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 38; Significance: 0.000000000001; HSPs: 14)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 186 - 223
Target Start/End: Original strand, 8130572 - 8130609
Alignment:
Q  186 tagtgaaaacttatgaattaacataaaaacttatttat 223  Q
    ||||||||||||||||||||||||||||||||||||||    
T  8130572 tagtgaaaacttatgaattaacataaaaacttatttat 8130609  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 193 - 223
Target Start/End: Original strand, 17222929 - 17222959
Alignment:
Q  193 aacttatgaattaacataaaaacttatttat 223  Q
    |||||||||||||||||||||||||||||||    
T  17222929 aacttatgaattaacataaaaacttatttat 17222959  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 189 - 223
Target Start/End: Complemental strand, 18424268 - 18424234
Alignment:
Q  189 tgaaaacttatgaattaacataaaaacttatttat 223  Q
    ||||||||||||||||||||||||| |||||||||    
T  18424268 tgaaaacttatgaattaacataaaagcttatttat 18424234  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 185 - 223
Target Start/End: Complemental strand, 34526331 - 34526293
Alignment:
Q  185 atagtgaaaacttatgaattaacataaaaacttatttat 223  Q
    ||||||| ||||||||||||||||||||| |||||||||    
T  34526331 atagtgagaacttatgaattaacataaaagcttatttat 34526293  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 193 - 223
Target Start/End: Complemental strand, 43699435 - 43699405
Alignment:
Q  193 aacttatgaattaacataaaaacttatttat 223  Q
    |||||||||||||||||||||||||||||||    
T  43699435 aacttatgaattaacataaaaacttatttat 43699405  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 186 - 223
Target Start/End: Complemental strand, 488377 - 488340
Alignment:
Q  186 tagtgaaaacttatgaattaacataaaaacttatttat 223  Q
    |||||| ||||||||||||||||||||| |||||||||    
T  488377 tagtgagaacttatgaattaacataaaagcttatttat 488340  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 186 - 223
Target Start/End: Original strand, 825775 - 825812
Alignment:
Q  186 tagtgaaaacttatgaattaacataaaaacttatttat 223  Q
    |||||||| ||||||||||||||||||| |||||||||    
T  825775 tagtgaaagcttatgaattaacataaaatcttatttat 825812  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 186 - 223
Target Start/End: Complemental strand, 12495637 - 12495600
Alignment:
Q  186 tagtgaaaacttatgaattaacataaaaacttatttat 223  Q
    |||||| ||||||| |||||||||||||||||||||||    
T  12495637 tagtgagaacttataaattaacataaaaacttatttat 12495600  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 186 - 223
Target Start/End: Complemental strand, 14987593 - 14987556
Alignment:
Q  186 tagtgaaaacttatgaattaacataaaaacttatttat 223  Q
    |||||| |||||||||||||| ||||||||||||||||    
T  14987593 tagtgagaacttatgaattaatataaaaacttatttat 14987556  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 186 - 223
Target Start/End: Complemental strand, 36255029 - 36254992
Alignment:
Q  186 tagtgaaaacttatgaattaacataaaaacttatttat 223  Q
    |||||| ||||||||||||||||||||| |||||||||    
T  36255029 tagtgagaacttatgaattaacataaaagcttatttat 36254992  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 186 - 223
Target Start/End: Complemental strand, 42611862 - 42611825
Alignment:
Q  186 tagtgaaaacttatgaattaacataaaaacttatttat 223  Q
    |||||| ||||||||||||||||||||| |||||||||    
T  42611862 tagtgacaacttatgaattaacataaaagcttatttat 42611825  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 186 - 223
Target Start/End: Complemental strand, 42617223 - 42617186
Alignment:
Q  186 tagtgaaaacttatgaattaacataaaaacttatttat 223  Q
    |||||||||||||| |||||| ||||||||||||||||    
T  42617223 tagtgaaaacttataaattaaaataaaaacttatttat 42617186  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 187 - 223
Target Start/End: Original strand, 34633484 - 34633520
Alignment:
Q  187 agtgaaaacttatgaattaacataaaaacttatttat 223  Q
    ||||| ||||||||||||||||||||| |||||||||    
T  34633484 agtgagaacttatgaattaacataaaagcttatttat 34633520  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 191 - 223
Target Start/End: Complemental strand, 43415276 - 43415244
Alignment:
Q  191 aaaacttatgaattaacataaaaacttatttat 223  Q
    |||||||||||||||||||||||| ||||||||    
T  43415276 aaaacttatgaattaacataaaaatttatttat 43415244  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 35; Significance: 0.00000000008; HSPs: 10)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 185 - 223
Target Start/End: Complemental strand, 31079160 - 31079122
Alignment:
Q  185 atagtgaaaacttatgaattaacataaaaacttatttat 223  Q
    |||||||||||||||||||||| ||||||||||||||||    
T  31079160 atagtgaaaacttatgaattaagataaaaacttatttat 31079122  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 186 - 223
Target Start/End: Complemental strand, 25333694 - 25333657
Alignment:
Q  186 tagtgaaaacttatgaattaacataaaaacttatttat 223  Q
    |||||||||||||||||||||||||||| |||||||||    
T  25333694 tagtgaaaacttatgaattaacataaaagcttatttat 25333657  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 189 - 223
Target Start/End: Complemental strand, 25465837 - 25465803
Alignment:
Q  189 tgaaaacttatgaattaacataaaaacttatttat 223  Q
    ||||||||||||||||||||||||| |||||||||    
T  25465837 tgaaaacttatgaattaacataaaagcttatttat 25465803  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 189 - 223
Target Start/End: Complemental strand, 34545611 - 34545577
Alignment:
Q  189 tgaaaacttatgaattaacataaaaacttatttat 223  Q
    ||||||||||| |||||||||||||||||||||||    
T  34545611 tgaaaacttataaattaacataaaaacttatttat 34545577  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 186 - 223
Target Start/End: Complemental strand, 16926721 - 16926684
Alignment:
Q  186 tagtgaaaacttatgaattaacataaaaacttatttat 223  Q
    |||||| ||||||| |||||||||||||||||||||||    
T  16926721 tagtgagaacttataaattaacataaaaacttatttat 16926684  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 186 - 223
Target Start/End: Complemental strand, 25671883 - 25671846
Alignment:
Q  186 tagtgaaaacttatgaattaacataaaaacttatttat 223  Q
    |||||||||||||| ||||||||||||| |||||||||    
T  25671883 tagtgaaaacttataaattaacataaaagcttatttat 25671846  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 186 - 223
Target Start/End: Original strand, 28280802 - 28280839
Alignment:
Q  186 tagtgaaaacttatgaattaacataaaaacttatttat 223  Q
    |||||| |||||||||||||| ||||||||||||||||    
T  28280802 tagtgagaacttatgaattaagataaaaacttatttat 28280839  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 182 - 219
Target Start/End: Original strand, 32131529 - 32131566
Alignment:
Q  182 tcaatagtgaaaacttatgaattaacataaaaacttat 219  Q
    |||||||||| ||||||||||||||||||||| |||||    
T  32131529 tcaatagtgagaacttatgaattaacataaaagcttat 32131566  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 186 - 223
Target Start/End: Complemental strand, 32924206 - 32924169
Alignment:
Q  186 tagtgaaaacttatgaattaacataaaaacttatttat 223  Q
    ||||||||||||||||||||| |||||| |||||||||    
T  32924206 tagtgaaaacttatgaattaatataaaagcttatttat 32924169  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 186 - 223
Target Start/End: Original strand, 38895752 - 38895789
Alignment:
Q  186 tagtgaaaacttatgaattaacataaaaacttatttat 223  Q
    |||||||||||||| |||||| ||||||||||||||||    
T  38895752 tagtgaaaacttataaattaatataaaaacttatttat 38895789  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 34; Significance: 0.0000000003; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 186 - 223
Target Start/End: Original strand, 8832550 - 8832587
Alignment:
Q  186 tagtgaaaacttatgaattaacataaaaacttatttat 223  Q
    |||||||||||||||||||||||||||| |||||||||    
T  8832550 tagtgaaaacttatgaattaacataaaagcttatttat 8832587  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 193 - 223
Target Start/End: Complemental strand, 7480885 - 7480855
Alignment:
Q  193 aacttatgaattaacataaaaacttatttat 223  Q
    |||||||||||||||||||||||||||||||    
T  7480885 aacttatgaattaacataaaaacttatttat 7480855  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 186 - 223
Target Start/End: Complemental strand, 44475512 - 44475475
Alignment:
Q  186 tagtgaaaacttatgaattaacataaaaacttatttat 223  Q
    |||||| |||||| ||||||||||||||||||||||||    
T  44475512 tagtgagaacttacgaattaacataaaaacttatttat 44475475  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 34; Significance: 0.0000000003; HSPs: 8)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 189 - 222
Target Start/End: Complemental strand, 12871465 - 12871432
Alignment:
Q  189 tgaaaacttatgaattaacataaaaacttattta 222  Q
    ||||||||||||||||||||||||||||||||||    
T  12871465 tgaaaacttatgaattaacataaaaacttattta 12871432  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 192 - 223
Target Start/End: Original strand, 14862932 - 14862963
Alignment:
Q  192 aaacttatgaattaacataaaaacttatttat 223  Q
    ||||||||||||||||||||||||||||||||    
T  14862932 aaacttatgaattaacataaaaacttatttat 14862963  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 192 - 223
Target Start/End: Original strand, 14868484 - 14868515
Alignment:
Q  192 aaacttatgaattaacataaaaacttatttat 223  Q
    ||||||||||||||||||||||||||||||||    
T  14868484 aaacttatgaattaacataaaaacttatttat 14868515  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 186 - 223
Target Start/End: Complemental strand, 3069847 - 3069810
Alignment:
Q  186 tagtgaaaacttatgaattaacataaaaacttatttat 223  Q
    |||||| ||||||||||||||||||||| |||||||||    
T  3069847 tagtgagaacttatgaattaacataaaagcttatttat 3069810  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 186 - 223
Target Start/End: Original strand, 48819392 - 48819429
Alignment:
Q  186 tagtgaaaacttatgaattaacataaaaacttatttat 223  Q
    |||||| ||||||||||||||||||||| |||||||||    
T  48819392 tagtgagaacttatgaattaacataaaagcttatttat 48819429  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 186 - 223
Target Start/End: Original strand, 49822829 - 49822866
Alignment:
Q  186 tagtgaaaacttatgaattaacataaaaacttatttat 223  Q
    ||||||||| ||||||||||| ||||||||||||||||    
T  49822829 tagtgaaaatttatgaattaaaataaaaacttatttat 49822866  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 187 - 223
Target Start/End: Original strand, 37431228 - 37431264
Alignment:
Q  187 agtgaaaacttatgaattaacataaaaacttatttat 223  Q
    |||||||||||||||||||||| |||| |||||||||    
T  37431228 agtgaaaacttatgaattaacaaaaaagcttatttat 37431264  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 191 - 223
Target Start/End: Complemental strand, 37569592 - 37569560
Alignment:
Q  191 aaaacttatgaattaacataaaaacttatttat 223  Q
    ||||||||| |||||||||||||||||||||||    
T  37569592 aaaacttataaattaacataaaaacttatttat 37569560  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 32; Significance: 0.000000005; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 188 - 223
Target Start/End: Original strand, 10874079 - 10874114
Alignment:
Q  188 gtgaaaacttatgaattaacataaaaacttatttat 223  Q
    |||||||||||||||||||||||||| |||||||||    
T  10874079 gtgaaaacttatgaattaacataaaagcttatttat 10874114  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 186 - 223
Target Start/End: Complemental strand, 9201714 - 9201677
Alignment:
Q  186 tagtgaaaacttatgaattaacataaaaacttatttat 223  Q
    |||||| ||||||||||||||||||||| |||||||||    
T  9201714 tagtgagaacttatgaattaacataaaagcttatttat 9201677  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 186 - 223
Target Start/End: Complemental strand, 9202392 - 9202355
Alignment:
Q  186 tagtgaaaacttatgaattaacataaaaacttatttat 223  Q
    |||||| ||||||||||||||||||||| |||||||||    
T  9202392 tagtgataacttatgaattaacataaaagcttatttat 9202355  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 186 - 223
Target Start/End: Complemental strand, 32675882 - 32675845
Alignment:
Q  186 tagtgaaaacttatgaattaacataaaaacttatttat 223  Q
    |||||| |||||||||||||| ||||||||||||||||    
T  32675882 tagtgagaacttatgaattaatataaaaacttatttat 32675845  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 31; Significance: 0.00000002; HSPs: 8)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 193 - 223
Target Start/End: Complemental strand, 22809179 - 22809149
Alignment:
Q  193 aacttatgaattaacataaaaacttatttat 223  Q
    |||||||||||||||||||||||||||||||    
T  22809179 aacttatgaattaacataaaaacttatttat 22809149  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 186 - 223
Target Start/End: Original strand, 3845947 - 3845984
Alignment:
Q  186 tagtgaaaacttatgaattaacataaaaacttatttat 223  Q
    |||||||||| ||||||||||||||||| |||||||||    
T  3845947 tagtgaaaacatatgaattaacataaaagcttatttat 3845984  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 186 - 223
Target Start/End: Original strand, 7292770 - 7292807
Alignment:
Q  186 tagtgaaaacttatgaattaacataaaaacttatttat 223  Q
    |||||||| |||| ||||||||||||||||||||||||    
T  7292770 tagtgaaagcttaggaattaacataaaaacttatttat 7292807  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 186 - 223
Target Start/End: Original strand, 10449070 - 10449107
Alignment:
Q  186 tagtgaaaacttatgaattaacataaaaacttatttat 223  Q
    |||||| |||||||||||||| ||||||||||||||||    
T  10449070 tagtgagaacttatgaattaagataaaaacttatttat 10449107  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 186 - 223
Target Start/End: Complemental strand, 40581069 - 40581032
Alignment:
Q  186 tagtgaaaacttatgaattaacataaaaacttatttat 223  Q
    |||||| ||||||||||||||||||||| |||||||||    
T  40581069 tagtgagaacttatgaattaacataaaatcttatttat 40581032  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 186 - 223
Target Start/End: Complemental strand, 42956172 - 42956135
Alignment:
Q  186 tagtgaaaacttatgaattaacataaaaacttatttat 223  Q
    |||||| ||||||| |||||||||||||||||||||||    
T  42956172 tagtgagaacttataaattaacataaaaacttatttat 42956135  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 189 - 222
Target Start/End: Original strand, 43376791 - 43376824
Alignment:
Q  189 tgaaaacttatgaattaacataaaaacttattta 222  Q
    |||||||||||||||||| |||||||||||||||    
T  43376791 tgaaaacttatgaattaatataaaaacttattta 43376824  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 195 - 223
Target Start/End: Original strand, 30383867 - 30383895
Alignment:
Q  195 cttatgaattaacataaaaacttatttat 223  Q
    |||||||||||||||||||||||||||||    
T  30383867 cttatgaattaacataaaaacttatttat 30383895  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0157 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: scaffold0157
Description:

Target: scaffold0157; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 186 - 223
Target Start/End: Original strand, 24840 - 24877
Alignment:
Q  186 tagtgaaaacttatgaattaacataaaaacttatttat 223  Q
    |||||| ||||||| |||||||||||||||||||||||    
T  24840 tagtgagaacttataaattaacataaaaacttatttat 24877  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University