View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4203_low_18 (Length: 218)

Name: NF4203_low_18
Description: NF4203
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4203_low_18
NF4203_low_18
[»] chr5 (2 HSPs)
chr5 (111-202)||(589825-589916)
chr5 (18-111)||(40270927-40271020)
[»] chr1 (2 HSPs)
chr1 (18-112)||(30717982-30718076)
chr1 (18-112)||(10310640-10310734)
[»] chr3 (1 HSPs)
chr3 (18-110)||(5373735-5373826)
[»] chr7 (1 HSPs)
chr7 (18-110)||(27455903-27455996)


Alignment Details
Target: chr5 (Bit Score: 88; Significance: 2e-42; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 111 - 202
Target Start/End: Original strand, 589825 - 589916
Alignment:
Q  111 ttaagtaattcagatatgtaaaattctttgaaattatgtctcctgcgacggatctagaaatataatataacatttcatttttaaaagcataa 202  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||    
T  589825 ttaagtaattcagatatgtaaaattctttgaaattatgtctcctgcgacggatctagaaatataatataacatttcgtttttaaaagcataa 589916  T

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Target: chr5; HSP #2
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 18 - 111
Target Start/End: Complemental strand, 40271020 - 40270927
Alignment:
Q  18 tcccacttaccaaacatgtgggttagcataataaaagaaatagcggttcttgaatttttcttaaaaaatttttcgctgaatacagcattttcct 111  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||  |||||||||||||| |||||||||    
T  40271020 tcccacttaccaaacatgtgggttagcataataaaagaaatagcggttcttgaatttttgttaaaaaaaatttcgctgaatacaacattttcct 40270927  T

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Target: chr1 (Bit Score: 87; Significance: 7e-42; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 87; E-Value: 7e-42
Query Start/End: Original strand, 18 - 112
Target Start/End: Complemental strand, 30718076 - 30717982
Alignment:
Q  18 tcccacttaccaaacatgtgggttagcataataaaagaaatagcggttcttgaatttttcttaaaaaatttttcgctgaatacagcattttcctt 112  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  |||||||||||||||||||||||||    
T  30718076 tcccacttaccaaacatgtgggttagcataataaaagaaatagcggttcttgaatttttcttaaaaaaaatttcgctgaatacagcattttcctt 30717982  T

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Target: chr1; HSP #2
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 18 - 112
Target Start/End: Complemental strand, 10310734 - 10310640
Alignment:
Q  18 tcccacttaccaaacatgtgggttagcataataaaagaaatagcggttcttgaatttttcttaaaaaatttttcgctgaatacagcattttcctt 112  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||   ||||||||||||||||||||||||    
T  10310734 tcccacttaccaaacatgtgggttagcataataaaagaaatagcggttcttgaatttttcttaaaaaaaaattcgctgaatacagcattttcctt 10310640  T

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Target: chr3 (Bit Score: 77; Significance: 7e-36; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 77; E-Value: 7e-36
Query Start/End: Original strand, 18 - 110
Target Start/End: Complemental strand, 5373826 - 5373735
Alignment:
Q  18 tcccacttaccaaacatgtgggttagcataataaaagaaatagcggttcttgaatttttcttaaaaaatttttcgctgaatacagcattttcc 110  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| | ||||||||||||||||||||||||    
T  5373826 tcccacttaccaaacatgtgggttagcataataaaagaaatagcggttctttaatttttcttaaaata-ttttcgctgaatacagcattttcc 5373735  T

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Target: chr7 (Bit Score: 66; Significance: 2e-29; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 66; E-Value: 2e-29
Query Start/End: Original strand, 18 - 110
Target Start/End: Complemental strand, 27455996 - 27455903
Alignment:
Q  18 tcccacttaccaaacatgtgggttagcataataaaagaaatagcggttcttgaatttttcttaaa-aaatttttcgctgaatacagcattttcc 110  Q
    ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||    ||||| |||||||||||||||||||    
T  27455996 tcccacttaccaaacatatgggttagcataataaaagaaatagcggttcttgaatttttcttaaattttttttttgctgaatacagcattttcc 27455903  T

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