View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4203_low_3 (Length: 579)

Name: NF4203_low_3
Description: NF4203
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4203_low_3
NF4203_low_3
[»] chr6 (19 HSPs)
chr6 (18-322)||(15576375-15576679)
chr6 (405-560)||(15576189-15576344)
chr6 (21-255)||(15574470-15574708)
chr6 (345-495)||(16527772-16527913)
chr6 (75-252)||(16526916-16527093)
chr6 (345-473)||(1755666-1755794)
chr6 (106-251)||(12972738-12972883)
chr6 (406-495)||(30355260-30355349)
chr6 (345-462)||(12972509-12972626)
chr6 (389-488)||(15574842-15574941)
chr6 (188-323)||(17860693-17860828)
chr6 (404-452)||(12974270-12974318)
chr6 (495-546)||(13194291-13194342)
chr6 (365-410)||(7837121-7837166)
chr6 (95-215)||(8322602-8322722)
chr6 (370-410)||(17695705-17695745)
chr6 (20-67)||(17860886-17860933)
chr6 (496-565)||(6091920-6091989)
chr6 (370-410)||(11126599-11126639)
[»] chr5 (31 HSPs)
chr5 (94-473)||(24841367-24841754)
chr5 (84-325)||(11274630-11274871)
chr5 (18-270)||(17027061-17027316)
chr5 (21-252)||(22754483-22754718)
chr5 (345-488)||(17027400-17027543)
chr5 (370-473)||(11274445-11274547)
chr5 (92-325)||(23125219-23125454)
chr5 (345-430)||(12029493-12029578)
chr5 (404-488)||(25594791-25594875)
chr5 (412-495)||(17382127-17382210)
chr5 (81-235)||(19331160-19331315)
chr5 (404-495)||(30072111-30072201)
chr5 (346-482)||(22754829-22754958)
chr5 (403-478)||(22967951-22968026)
chr5 (428-495)||(24517310-24517377)
chr5 (495-560)||(11273683-11273748)
chr5 (412-495)||(12340106-12340187)
chr5 (404-481)||(22229741-22229818)
chr5 (345-462)||(22643989-22644105)
chr5 (495-567)||(17768641-17768713)
chr5 (496-560)||(19571048-19571112)
chr5 (370-410)||(20860430-20860470)
chr5 (370-410)||(34133866-34133906)
chr5 (350-397)||(11274548-11274595)
chr5 (496-546)||(24518964-24519014)
chr5 (403-473)||(24846192-24846262)
chr5 (404-480)||(15205577-15205653)
chr5 (496-565)||(18451061-18451130)
chr5 (370-410)||(22938049-22938089)
chr5 (500-560)||(25682147-25682207)
chr5 (401-473)||(26070404-26070475)
[»] chr7 (45 HSPs)
chr7 (22-321)||(21471325-21471628)
chr7 (345-481)||(7494584-7494720)
chr7 (22-252)||(5721929-5722164)
chr7 (349-495)||(20470902-20471049)
chr7 (349-488)||(21471674-21471813)
chr7 (404-495)||(29544451-29544542)
chr7 (345-456)||(9761537-9761646)
chr7 (349-446)||(3269123-3269220)
chr7 (94-217)||(7955796-7955920)
chr7 (404-500)||(2632523-2632619)
chr7 (404-473)||(7142030-7142099)
chr7 (394-456)||(9801996-9802057)
chr7 (495-565)||(21544679-21544749)
chr7 (406-470)||(2353357-2353421)
chr7 (404-495)||(20446171-20446262)
chr7 (404-496)||(23124833-23124924)
chr7 (496-567)||(7494484-7494555)
chr7 (349-472)||(16536689-16536811)
chr7 (345-472)||(16577387-16577513)
chr7 (345-472)||(16588149-16588275)
chr7 (349-472)||(16628851-16628973)
chr7 (345-427)||(1074341-1074422)
chr7 (98-250)||(1074076-1074229)
chr7 (345-406)||(7956058-7956119)
chr7 (405-462)||(18496498-18496555)
chr7 (404-456)||(21545929-21545984)
chr7 (495-563)||(7143571-7143639)
chr7 (495-567)||(7776350-7776422)
chr7 (370-410)||(13287676-13287716)
chr7 (370-410)||(26137034-26137074)
chr7 (501-560)||(9071392-9071451)
chr7 (496-567)||(18494555-18494626)
chr7 (491-546)||(21473039-21473094)
chr7 (416-481)||(7815267-7815332)
chr7 (400-446)||(22532784-22532830)
chr7 (522-563)||(7152116-7152157)
chr7 (496-557)||(14074486-14074547)
chr7 (496-557)||(14384514-14384575)
chr7 (370-410)||(2506786-2506826)
chr7 (370-410)||(4596918-4596958)
chr7 (370-410)||(15170730-15170770)
chr7 (93-145)||(16166702-16166754)
chr7 (370-410)||(19154909-19154949)
chr7 (370-410)||(20754308-20754348)
chr7 (370-410)||(39270239-39270279)
[»] chr8 (36 HSPs)
chr8 (94-325)||(16052557-16052789)
chr8 (74-258)||(28901685-28901869)
chr8 (348-495)||(24120107-24120254)
chr8 (345-495)||(16052369-16052519)
chr8 (353-473)||(22894648-22894768)
chr8 (84-232)||(22894905-22895054)
chr8 (397-487)||(28252481-28252571)
chr8 (345-495)||(28901432-28901582)
chr8 (345-495)||(10866861-10867011)
chr8 (387-495)||(13082029-13082137)
chr8 (184-325)||(24119925-24120066)
chr8 (91-278)||(12755799-12755987)
chr8 (349-430)||(5570305-5570386)
chr8 (414-495)||(12956431-12956512)
chr8 (414-495)||(14977199-14977280)
chr8 (349-432)||(28973490-28973573)
chr8 (412-473)||(11310318-11310379)
chr8 (403-495)||(16054225-16054317)
chr8 (371-456)||(29291670-29291755)
chr8 (404-495)||(32239219-32239310)
chr8 (403-501)||(6358629-6358727)
chr8 (495-557)||(12957559-12957621)
chr8 (187-244)||(5570508-5570565)
chr8 (495-560)||(32240446-32240511)
chr8 (404-495)||(29047408-29047499)
chr8 (497-560)||(13305658-13305721)
chr8 (495-546)||(13803096-13803147)
chr8 (186-252)||(28292459-28292525)
chr8 (402-456)||(30851230-30851284)
chr8 (365-410)||(26829427-26829472)
chr8 (522-567)||(26853601-26853646)
chr8 (94-209)||(17099875-17099990)
chr8 (370-410)||(25180687-25180727)
chr8 (370-410)||(29765357-29765397)
chr8 (420-472)||(30543711-30543763)
chr8 (370-410)||(33878232-33878272)
[»] chr1 (33 HSPs)
chr1 (345-495)||(23223284-23223434)
chr1 (345-481)||(21451921-21452057)
chr1 (349-495)||(30675360-30675507)
chr1 (84-172)||(23223131-23223220)
chr1 (345-444)||(15299012-15299111)
chr1 (404-495)||(50047113-50047204)
chr1 (404-481)||(12424020-12424097)
chr1 (345-473)||(31313425-31313553)
chr1 (416-495)||(26657420-26657499)
chr1 (496-567)||(50048239-50048310)
chr1 (199-321)||(21452099-21452221)
chr1 (403-488)||(11770093-11770178)
chr1 (404-488)||(25730670-25730754)
chr1 (405-486)||(25777932-25778013)
chr1 (404-495)||(12810256-12810345)
chr1 (420-472)||(34935297-34935349)
chr1 (427-469)||(25266462-25266504)
chr1 (243-325)||(30675235-30675317)
chr1 (495-565)||(34522115-34522185)
chr1 (404-488)||(8247756-8247840)
chr1 (365-410)||(22624837-22624882)
chr1 (416-473)||(25965488-25965545)
chr1 (93-169)||(31313020-31313097)
chr1 (370-410)||(21914855-21914895)
chr1 (402-462)||(26101987-26102047)
chr1 (94-145)||(27754786-27754837)
chr1 (121-190)||(14397286-14397356)
chr1 (498-560)||(17836791-17836853)
chr1 (487-565)||(23224619-23224697)
chr1 (498-560)||(30676667-30676729)
chr1 (91-145)||(31313107-31313161)
chr1 (370-410)||(21912072-21912112)
chr1 (496-560)||(27682929-27682993)
[»] chr2 (25 HSPs)
chr2 (345-488)||(28278522-28278664)
chr2 (403-495)||(21505231-21505323)
chr2 (349-473)||(39730324-39730448)
chr2 (345-470)||(31449830-31449955)
chr2 (348-462)||(32276638-32276752)
chr2 (111-217)||(39730111-39730217)
chr2 (92-217)||(22389140-22389265)
chr2 (416-473)||(32619586-32619643)
chr2 (186-278)||(17415496-17415588)
chr2 (201-321)||(28278704-28278823)
chr2 (495-567)||(31000597-31000669)
chr2 (404-495)||(35707735-35707826)
chr2 (404-495)||(25473969-25474060)
chr2 (404-471)||(18236418-18236485)
chr2 (413-495)||(1733042-1733123)
chr2 (393-443)||(29769610-29769660)
chr2 (345-442)||(27918127-27918224)
chr2 (345-409)||(22388934-22388997)
chr2 (370-410)||(1504312-1504352)
chr2 (370-410)||(20379377-20379417)
chr2 (370-410)||(25873169-25873209)
chr2 (370-410)||(25886157-25886197)
chr2 (497-565)||(28455128-28455196)
chr2 (421-473)||(31914047-31914099)
chr2 (370-410)||(45456266-45456306)
[»] chr4 (24 HSPs)
chr4 (345-479)||(1676403-1676537)
chr4 (345-479)||(1682931-1683065)
chr4 (153-277)||(1696893-1697017)
chr4 (345-481)||(1696675-1696809)
chr4 (406-481)||(15192137-15192212)
chr4 (345-432)||(34850752-34850839)
chr4 (420-495)||(34864383-34864458)
chr4 (407-471)||(12111446-12111510)
chr4 (402-473)||(18897921-18897992)
chr4 (403-488)||(5906819-5906905)
chr4 (390-456)||(10576371-10576437)
chr4 (81-147)||(15787861-15787927)
chr4 (496-566)||(47023552-47023622)
chr4 (495-558)||(20717941-20718004)
chr4 (404-466)||(9288142-9288204)
chr4 (495-559)||(12840697-12840761)
chr4 (496-560)||(22219945-22220009)
chr4 (404-495)||(25315323-25315414)
chr4 (522-565)||(24580004-24580047)
chr4 (425-488)||(25050164-25050227)
chr4 (506-557)||(30797703-30797754)
chr4 (412-456)||(10320350-10320394)
chr4 (405-473)||(17339927-17339995)
chr4 (370-410)||(19826667-19826707)
[»] chr3 (25 HSPs)
chr3 (22-321)||(11520668-11520971)
chr3 (346-494)||(21017750-21017899)
chr3 (345-470)||(13911138-13911263)
chr3 (404-487)||(25919564-25919647)
chr3 (345-444)||(8402693-8402792)
chr3 (404-495)||(17637035-17637126)
chr3 (94-234)||(5632859-5633000)
chr3 (345-409)||(5632668-5632732)
chr3 (371-422)||(11521039-11521090)
chr3 (435-495)||(33914654-33914714)
chr3 (413-487)||(12573231-12573305)
chr3 (413-487)||(13549695-13549769)
chr3 (408-473)||(16970177-16970241)
chr3 (404-481)||(19219317-19219394)
chr3 (501-565)||(10343000-10343064)
chr3 (370-410)||(10883984-10884024)
chr3 (404-471)||(18065761-18065828)
chr3 (404-493)||(1475374-1475463)
chr3 (407-473)||(31477705-31477771)
chr3 (499-560)||(33913400-33913461)
chr3 (161-209)||(8770880-8770928)
chr3 (370-410)||(16223572-16223612)
chr3 (370-410)||(18541774-18541814)
chr3 (370-410)||(31283869-31283909)
chr3 (370-410)||(47053927-47053967)
[»] scaffold0282 (1 HSPs)
scaffold0282 (349-471)||(22661-22783)
[»] scaffold1026 (2 HSPs)
scaffold1026 (347-466)||(1952-2071)
scaffold1026 (111-247)||(2186-2323)
[»] scaffold0171 (3 HSPs)
scaffold0171 (404-481)||(6128-6205)
scaffold0171 (496-568)||(7349-7421)
scaffold0171 (411-473)||(21336-21398)
[»] scaffold0386 (2 HSPs)
scaffold0386 (404-480)||(8816-8892)
scaffold0386 (419-488)||(13170-13239)
[»] scaffold0990 (2 HSPs)
scaffold0990 (154-257)||(3134-3237)
scaffold0990 (74-126)||(3075-3127)
[»] scaffold0002 (1 HSPs)
scaffold0002 (404-481)||(446937-447014)
[»] scaffold0188 (1 HSPs)
scaffold0188 (413-473)||(27068-27128)
[»] scaffold0048 (2 HSPs)
scaffold0048 (370-410)||(24001-24041)
scaffold0048 (370-410)||(28239-28279)
[»] scaffold0210 (1 HSPs)
scaffold0210 (345-407)||(25216-25278)
[»] scaffold0084 (1 HSPs)
scaffold0084 (370-411)||(28544-28585)
[»] scaffold0321 (1 HSPs)
scaffold0321 (370-410)||(3841-3881)
[»] scaffold0270 (1 HSPs)
scaffold0270 (370-410)||(1054-1094)
[»] scaffold0198 (1 HSPs)
scaffold0198 (365-409)||(3979-4023)
[»] scaffold0072 (1 HSPs)
scaffold0072 (370-410)||(38382-38422)


Alignment Details
Target: chr6 (Bit Score: 269; Significance: 1e-150; HSPs: 19)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 269; E-Value: 1e-150
Query Start/End: Original strand, 18 - 322
Target Start/End: Complemental strand, 15576679 - 15576375
Alignment:
Q  18 tctcaaatataccccaccttaacctcaaccacgtgataaccttgaaaatgccttcggtgtgtatggtgatatagaccttgaatgtctatttagaattgct 117  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||| ||||||||    
T  15576679 tctcaaatataccccaccttaacctcaaccacgtgataaccttgaaaatgcctccagtgtgtatggtgatatagaccttgaatgtctatttcgaattgct 15576580  T
Q  118 tcaatctcatagtaaggtacaatcacatgatgactgagtgtgacaaatgccttgaccagccccatcggctttaggaggtacatacgtgtatcttggaatt 217  Q
    |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| ||||||||||||||| |||||||||||||||||||    
T  15576579 tcaatctcatagtaaggtacaatcacatgatggctgagtgtgacaaatgccttgaccagccccaccggctttaggaggtatatacgtgtatcttggaatt 15576480  T
Q  218 ttatctggttgaaagtaattgtatcttctctaagtttgttcatcttgcatggaaatggtaatatagttacgtctgatggtgggatgagtgacaatctgag 317  Q
    |||| |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||    
T  15576479 ttatttggttgaaagtaattgtatcttctctaagtttgttcctcttgcatggaaatggtaatatagttacgtctgacggtgggatgagtgacaatctgag 15576380  T
Q  318 caaaa 322  Q
    |||||    
T  15576379 caaaa 15576375  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 128; E-Value: 7e-66
Query Start/End: Original strand, 405 - 560
Target Start/End: Complemental strand, 15576344 - 15576189
Alignment:
Q  405 gatgacggagcatcatatgatatttttggttatgtttttagtacttttctttgaatttaaagacaaataggatgagaattagagtagttgttgatggacg 504  Q
    ||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||    
T  15576344 gatgatggagcatcatatgatatttttggctatgtttttagtacttttctttgaatttaaagacaaataggatgagaattagaggagttgttgatggacg 15576245  T
Q  505 aaattagcaagttcatgaaatcgtaacaagtaataaagtagtcagattatcgttct 560  Q
    ||||| |||||| ||| |||||||||||||||||||||||||||| ||||||||||    
T  15576244 aaattggcaagtgcatcaaatcgtaacaagtaataaagtagtcagtttatcgttct 15576189  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 81; E-Value: 8e-38
Query Start/End: Original strand, 21 - 255
Target Start/End: Original strand, 15574470 - 15574708
Alignment:
Q  21 caaatataccccaccttaacctcaaccacgtgataaccttgaaaatgcct---tcggtgtgtatggtgatatagaccttgaatgtctatttagaattgct 117  Q
    |||||||| ||||||||||||||| |||||| |||||||||||||  |||   |  ||||||||  ||||||| ||||||||||||||| || |||||||    
T  15574470 caaatatatcccaccttaacctcagccacgttataaccttgaaaagtcctctatatgtgtgtataatgatataaaccttgaatgtctatgtataattgct 15574569  T
Q  118 tcaatctcatagtaaggtacaatcacatgatgact-gagtgtgacaaatgccttgaccagccccatcggctttaggaggtacatacgtgtatcttggaat 216  Q
    |||||||||||| ||| |||||||||||||  | | |||||||  |||||| ||||||||  |||   ||||||| || |||||| ||||||||||||||    
T  15574570 tcaatctcatagcaagatacaatcacatgacaagtagagtgtggtaaatgctttgaccagtgccacaagctttagaagatacatatgtgtatcttggaat 15574669  T
Q  217 tttatctggttgaaagtaattgtatcttctctaagtttg 255  Q
      ||| |||||||||||||  ||||| ||||||||||||    
T  15574670 catatgtggttgaaagtaagagtatcctctctaagtttg 15574708  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 74; E-Value: 1e-33
Query Start/End: Original strand, 345 - 495
Target Start/End: Original strand, 16527772 - 16527913
Alignment:
Q  345 attctaacttcttgctattgtgtttcttgaggacaagaaacggtttaagtttggggttgtgatgacggagcatcatatgatatttttggttatgttttta 444  Q
    |||||||| |||||||||   ||| |||||||||||||| |||||||||||||||||||||||| | ||||||||||| |||||||||| ||||||||||    
T  16527772 attctaacgtcttgctat---gttgcttgaggacaagaaccggtttaagtttggggttgtgatggcagagcatcatataatatttttggctatgttttta 16527868  T
Q  445 gtacttttctttgaatttaaagacaaataggatgagaattagagtagttgt 495  Q
    |||||||||||||      |||||||||| ||||||| |||||| ||||||    
T  16527869 gtacttttctttg------aagacaaataagatgagagttagaggagttgt 16527913  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 71; E-Value: 7e-32
Query Start/End: Original strand, 75 - 252
Target Start/End: Original strand, 16526916 - 16527093
Alignment:
Q  75 tgtgtatggtgatatagaccttgaatgtctatttagaattgcttcaatctcatagtaaggtacaatcacatgatgact-gagtgtgacaaatgccttgac 173  Q
    ||||| || ||||||| ||||||||||||| ||||||||||||| ||| | |||| ||||||||||||||||| |||| |||||||| | ||| ||||||    
T  16526916 tgtgtgtgatgatatataccttgaatgtctgtttagaattgctttaatgttatagaaaggtacaatcacatgacgactggagtgtgaaatatgtcttgac 16527015  T
Q  174 cagccccatcggctttaggaggtacatacgtgtatcttggaattttatctggttgaaagtaattgtatcttctctaagt 252  Q
    ||| ||||  | ||||| |||||||||| |||||||||| |||| ||| ||||||||| |||  |||||||||||||||    
T  16527016 cag-cccactgactttaagaggtacatatgtgtatcttgaaattgtatgtggttgaaattaagagtatcttctctaagt 16527093  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 69; E-Value: 1e-30
Query Start/End: Original strand, 345 - 473
Target Start/End: Complemental strand, 1755794 - 1755666
Alignment:
Q  345 attctaacttcttgctattgtgtttcttgaggacaagaaacggtttaagtttggggttgtgatgacggagcatcatatgatatttttggttatgttttta 444  Q
    |||||||||||| || ||| |||| || ||||||| | ||  ||||||||||||||||||||||||||||||||||||||||| |  |||||||||||||    
T  1755794 attctaacttctcgcaattttgttgctagaggacaggtaatagtttaagtttggggttgtgatgacggagcatcatatgatatatcaggttatgttttta 1755695  T
Q  445 gtacttttctttgaatttaaagacaaata 473  Q
    ||  |||||||||||||| ||||||||||    
T  1755694 gttattttctttgaatttgaagacaaata 1755666  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 106 - 251
Target Start/End: Complemental strand, 12972883 - 12972738
Alignment:
Q  106 tttagaattgcttcaatctcatagtaaggtacaatcacatgatgact-gagtgtgacaaatgccttgaccagccccatcggctttaggaggtacatacgt 204  Q
    |||||||||| ||||||||||||| |||||||||||||||||||| | ||||||| ||||||||||||||||| | | | | |||| || | |||||| |    
T  12972883 tttagaattgattcaatctcatagcaaggtacaatcacatgatgattggagtgtggcaaatgccttgaccagcacta-ctgatttaagaagaacatacat 12972785  T
Q  205 gtatcttggaattttatctggttgaaagtaattgtatcttctctaag 251  Q
    |||||||||||||| |  | |||||||||||  ||||||||||||||    
T  12972784 gtatcttggaatttcaagtagttgaaagtaagggtatcttctctaag 12972738  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 406 - 495
Target Start/End: Original strand, 30355260 - 30355349
Alignment:
Q  406 atgacggagcatcatatgatatttttggttatgtttttagtacttttctttgaatttaaagacaaataggatgagaattagagtagttgt 495  Q
    |||||||||||||||||||||||||||| ||||||||||||||||||  ||| |||| |||  ||||| ||||||| |||||| ||||||    
T  30355260 atgacggagcatcatatgatatttttggctatgtttttagtacttttacttgcatttgaaggtaaataagatgagagttagagaagttgt 30355349  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 345 - 462
Target Start/End: Complemental strand, 12972626 - 12972509
Alignment:
Q  345 attctaacttcttgctattgtgtttcttgaggacaagaaacggtttaagtttggggttgtgatgacggagcatcatatgatatttttggttatgttttta 444  Q
    |||||||||| |||||||| || | ||| || | ||| |||  |||||||||||||| |||||||  || |||||| |||||||||||| ||||||||||    
T  12972626 attctaacttgttgctattttggtgctttagaagaagcaacaatttaagtttggggtagtgatgatagaacatcatttgatatttttggctatgttttta 12972527  T
Q  445 gtacttttctttgaattt 462  Q
    ||  ||||||||| ||||    
T  12972526 gttattttctttgcattt 12972509  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 389 - 488
Target Start/End: Original strand, 15574842 - 15574941
Alignment:
Q  389 ttaagtttggggttgtgatgacggagcatcatatgatatttttggttatgtttttagtac-ttttctttgaatttaaagacaaataggatgagaattaga 487  Q
    |||||||||||||| ||||||| || |||||||||| | |||||| ||| || ||||||| ||||||||| |||| |||||||||| ||||||| |||||    
T  15574842 ttaagtttggggttatgatgacagaacatcatatgaca-ttttggctatcttgttagtactttttctttgcatttgaagacaaataagatgagatttaga 15574940  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 188 - 323
Target Start/End: Complemental strand, 17860828 - 17860693
Alignment:
Q  188 ttaggaggtacatacgtgtatcttggaattttatctggttgaaagtaattgtatcttctctaagtttgttcatcttgcatggaaatggtaatatagttac 287  Q
    |||||||||||||| |||||| || ||||| ||| |||||||||||||  |||| ||||||||   |||||  |||||||||||  |||||  ||||||     
T  17860828 ttaggaggtacatatgtgtatattagaattgtatgtggttgaaagtaagagtatgttctctaaaaatgttccgcttgcatggaagaggtaagctagttaa 17860729  T
Q  288 gtctgatggtgggatgagtgacaatctgagcaaaat 323  Q
    |||||||| ||||  || | | ||||||||||||||    
T  17860728 gtctgatgatgggtggaataaaaatctgagcaaaat 17860693  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 404 - 452
Target Start/End: Original strand, 12974270 - 12974318
Alignment:
Q  404 tgatgacggagcatcatatgatatttttggttatgtttttagtactttt 452  Q
    |||||||||||||||||||||||||||| | |||| |||||||||||||    
T  12974270 tgatgacggagcatcatatgatattttttgctatggttttagtactttt 12974318  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 495 - 546
Target Start/End: Complemental strand, 13194342 - 13194291
Alignment:
Q  495 ttgatggacgaaattagcaagttcatgaaatcgtaacaagtaataaagtagt 546  Q
    ||||||||||||||| |||||| ||  |||||||||||||||||||||||||    
T  13194342 ttgatggacgaaattggcaagtgcaccaaatcgtaacaagtaataaagtagt 13194291  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 365 - 410
Target Start/End: Original strand, 7837121 - 7837166
Alignment:
Q  365 tgtttcttgaggacaagaaacggtttaagtttggggttgtgatgac 410  Q
    ||||||||||||||||| ||| ||||||||||| ||||||||||||    
T  7837121 tgtttcttgaggacaagtaacagtttaagtttgaggttgtgatgac 7837166  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 95 - 215
Target Start/End: Original strand, 8322602 - 8322722
Alignment:
Q  95 ttgaatgtctatttagaattgcttcaatctcatagtaaggtacaatcacatgatgactg-agtgtgacaaatgccttgaccagccccatcggctttagga 193  Q
    |||||||||  |||||||||| |||||  |||||| |||||||| |||| ||| ||||| | || || ||||| | |||||||||| |  | ||||||||    
T  8322602 ttgaatgtccgtttagaattgtttcaaattcatagcaaggtacattcacgtgacgactggaatgaga-aaatgtcgtgaccagcccaactgactttagga 8322700  T
Q  194 ggtacatacgtgtatcttggaa 215  Q
    ||| ||||||||||||||||||    
T  8322701 ggtgcatacgtgtatcttggaa 8322722  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 370 - 410
Target Start/End: Original strand, 17695705 - 17695745
Alignment:
Q  370 cttgaggacaagaaacggtttaagtttggggttgtgatgac 410  Q
    |||||||||||| || |||||||||||||||||||||||||    
T  17695705 cttgaggacaaggaatggtttaagtttggggttgtgatgac 17695745  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 20 - 67
Target Start/End: Complemental strand, 17860933 - 17860886
Alignment:
Q  20 tcaaatataccccaccttaacctcaaccacgtgataaccttgaaaatg 67  Q
    ||||||||| |||||||||||||||  ||||| |||||||||||||||    
T  17860933 tcaaatatatcccaccttaacctcagtcacgttataaccttgaaaatg 17860886  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 496 - 565
Target Start/End: Original strand, 6091920 - 6091989
Alignment:
Q  496 tgatggacgaaattagcaagttcatgaaatcgtaacaagtaataaagtagtcagattatcgttcttcaca 565  Q
    ||||||||||||||  ||||| ||| ||||||||| || |||||||||||  || |||||||||| ||||    
T  6091920 tgatggacgaaattgacaagtgcattaaatcgtaaaaaataataaagtagaaagtttatcgttctccaca 6091989  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 370 - 410
Target Start/End: Complemental strand, 11126639 - 11126599
Alignment:
Q  370 cttgaggacaagaaacggtttaagtttggggttgtgatgac 410  Q
    ||||||||| ||||| |||| ||||||||||||||||||||    
T  11126639 cttgaggactagaaatggttcaagtttggggttgtgatgac 11126599  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 123; Significance: 7e-63; HSPs: 31)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 123; E-Value: 7e-63
Query Start/End: Original strand, 94 - 473
Target Start/End: Original strand, 24841367 - 24841754
Alignment:
Q  94 cttgaatgtctatttagaattgcttcaatctcatagtaaggtacaatcacatgatgact-gagtgtgacaaatgccttgaccagccccatcggctttagg 192  Q
    ||||||||| | |||||||||||||||||||||||||||||| ||||||||||||||||  |||||||||||| ||||||||||||||| |  |||||||    
T  24841367 cttgaatgtttgtttagaattgcttcaatctcatagtaaggtccaatcacatgatgactaaagtgtgacaaatcccttgaccagcccca-cttctttagg 24841465  T
Q  193 aggtacatacgtgtatcttggaattttatctggttgaaagtaattgtatcttctctaagtttgttcatcttgcatggaaatggtaatatagttacgtctg 292  Q
     | |||||| ||||||||||||||| ||| |||||||||||||  |||||||| ||||| || |||  ||||||||||| ||||||  |||| | ||| |    
T  24841466 tgatacatatgtgtatcttggaattgtatgtggttgaaagtaagagtatcttccctaagcttcttctacttgcatggaagtggtaagctagtcaagtcag 24841565  T
Q  293 atggtgggatgagtgacaatctgagcaaaatctgagcagaaggta--ttttcct--------attctaacttcttgctattgtgtttcttgaggacaaga 382  Q
    || ||| || || | ||||||||||| ||||||  |  ||| |||  ||||  |        |||||||||||||| ||||||||||||||||||||||     
T  24841566 atagtgagaagaataacaatctgagc-aaatctccg-ggaatgtatgttttaattaatgtaaattctaacttcttgttattgtgtttcttgaggacaagc 24841663  T
Q  383 aacggtttaagtttggggttgtgatgacggagcatcatatgatatttttggttatgtttttagtacttttctttgaatttaaagacaaata 473  Q
    ||| || || || ||||||||||||||| ||||||||||||| |||||| | ||||||||||||||| ||||||| |||| ||||||||||    
T  24841664 aacagtgtacgtatggggttgtgatgacagagcatcatatgacattttttgctatgtttttagtactattctttgcatttgaagacaaata 24841754  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 91; E-Value: 8e-44
Query Start/End: Original strand, 84 - 325
Target Start/End: Complemental strand, 11274871 - 11274630
Alignment:
Q  84 tgatatagaccttgaatgtctatttagaattgcttcaatctcatagtaaggtacaatcacatgatgact-gagtgtgacaaatgccttgaccagccccat 182  Q
    ||||||| ||||||||||| | ||| |||| |||||||| ||||||||||||| ||||||||||  ||| |||||||||||| |||||||||| |||| |    
T  11274871 tgatatataccttgaatgtttgtttggaatcgcttcaatttcatagtaaggtaaaatcacatgacaactagagtgtgacaaacgccttgaccatccccct 11274772  T
Q  183 cggctttaggaggtacatacgtgtatcttggaattttatctggttgaaagtaattgtatcttctctaagtttgttcatcttgcatggaaatggtaatata 282  Q
     ||||||||||| ||| || ||||||||||||||| ||| |||||||||||||  |||||||||| |||| |||||  |||||||| ||   ||||  ||    
T  11274771 -ggctttaggagatacctatgtgtatcttggaattgtatgtggttgaaagtaaaagtatcttctcaaagtctgttctgcttgcatgaaagcagtaagcta 11274673  T
Q  283 gttacgtctgatggtgggatgagtgacaatctgagcaaaatct 325  Q
    |||| |||||||||||| | || ||||||| ||||||||||||    
T  11274672 gttaagtctgatggtggaaagaatgacaatatgagcaaaatct 11274630  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 85; E-Value: 3e-40
Query Start/End: Original strand, 18 - 270
Target Start/End: Original strand, 17027061 - 17027316
Alignment:
Q  18 tctcaaatataccccaccttaacctcaaccacgtgataaccttgaaaatgccttcg--gtgtgtatggtgatatagaccttgaatgtctatttagaattg 115  Q
    |||||||| || |||||||||||||||| || || |||||||| |||| |||||    |||||| || ||||| | ||||||| ||||| |||| |||||    
T  17027061 tctcaaatgtatcccaccttaacctcaatcatgttataacctttaaaaggccttatatgtgtgtgtgatgataaataccttgagtgtctgtttataattg 17027160  T
Q  116 cttcaatctcatagtaaggtacaatcacatgatgactg-agtgtgacaaatgccttgaccagccccatcggctttaggaggtacatacgtgtatcttgga 214  Q
    ||| ||| |||||| |||| |||||||||||| ||||| ||| |||||||||| |||| ||||||||   |||||||||||||||||| |||||||||||    
T  17027161 cttaaatgtcataggaaggaacaatcacatgacgactggagtatgacaaatgcattgatcagccccactagctttaggaggtacatacatgtatcttgga 17027260  T
Q  215 attttatctggttgaaagtaattgtatcttctctaagtttgttcatcttgcatgga 270  Q
    ||| ||  ||||||||| |||  ||||||||||||| | |||||  ||||||||||    
T  17027261 attgtacgtggttgaaaataagagtatcttctctaactgtgttccgcttgcatgga 17027316  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 84; E-Value: 1e-39
Query Start/End: Original strand, 21 - 252
Target Start/End: Original strand, 22754483 - 22754718
Alignment:
Q  21 caaatataccccaccttaacctcaaccacgtgataaccttgaaaatgccttcggtgtgtatgg----tgatatagaccttgaatgtctatttagaattgc 116  Q
    ||||| || ||||||||||||||| |||||| |||||||||||| || | || || ||| ||     |||| || |||||||||| || ||||||||| |    
T  22754483 caaatttatcccaccttaacctcagccacgttataaccttgaaa-tgtcctctgtatgtgtgtgaaatgatgtataccttgaatgcctgtttagaatttc 22754581  T
Q  117 ttcaatctcatagtaaggtacaatcacatgatgactg-agtgtgacaaatgccttgaccagccccatcggctttaggaggtacatacgtgtatcttggaa 215  Q
    |||||||| |||| ||||||||||||||||| ||||| |||||| ||||||| ||||||| ||| || | ||||||||||||||||||||||||||||||    
T  22754582 ttcaatcttatagcaaggtacaatcacatgacgactggagtgtggcaaatgctttgaccaaccctattgactttaggaggtacatacgtgtatcttggaa 22754681  T
Q  216 ttttatctggttgaaagtaattgtatcttctctaagt 252  Q
    | |||| |||||||||||||   |||| |||||||||    
T  22754682 tattatatggttgaaagtaagaatatcctctctaagt 22754718  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 80; E-Value: 3e-37
Query Start/End: Original strand, 345 - 488
Target Start/End: Original strand, 17027400 - 17027543
Alignment:
Q  345 attctaacttcttgctattgtgtttcttgaggacaagaaacggtttaagtttggggttgtgatgacggagcatcatatgatatttttggttatgttttta 444  Q
    |||||||||| |||||| |||||| |||||||| ||| || |  |||||||||||||||||| || |||||||||||||| |||||||| ||||||||||    
T  17027400 attctaactttttgctaatgtgttgcttgaggataagcaatgacttaagtttggggttgtgacgagggagcatcatatgacatttttggctatgttttta 17027499  T
Q  445 gtacttttctttgaatttaaagacaaataggatgagaattagag 488  Q
    ||||||||||||| |||||||||||| || ||||||| ||||||    
T  17027500 gtacttttctttgcatttaaagacaattaagatgagagttagag 17027543  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 68; E-Value: 4e-30
Query Start/End: Original strand, 370 - 473
Target Start/End: Complemental strand, 11274547 - 11274445
Alignment:
Q  370 cttgaggacaagaaacggtttaagtttggggttgtgatgacggagcatcatatgatatttttggttatgtttttagtacttttctttgaatttaaagaca 469  Q
    |||||||||||| ||||||||||||||||||||||||||| |||||||||| |||||||||| | ||| ||||||||||||||||||| ||||||||||     
T  11274547 cttgaggacaagcaacggtttaagtttggggttgtgatgaaggagcatcatttgatattttttgctat-tttttagtacttttctttgcatttaaagacc 11274449  T
Q  470 aata 473  Q
    ||||    
T  11274448 aata 11274445  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 56; E-Value: 6e-23
Query Start/End: Original strand, 92 - 325
Target Start/End: Complemental strand, 23125454 - 23125219
Alignment:
Q  92 accttgaatgtctatttagaattgcttcaatctcatagtaaggtacaatcacatgatgact-gagtgtgacaaatgccttgaccagccccatcggcttta 190  Q
    ||||||| ||| | |||||||||| |||||||||| || || ||||||||||||||  ||| ||||||| ||| | ||||||||| |||||    |||||    
T  23125454 accttgagtgtatgtttagaattgtttcaatctcacagcaaagtacaatcacatgacaactggagtgtggcaagttccttgaccaaccccactatcttta 23125355  T
Q  191 ggaggtacatacgtgtatcttggaattttatctggttgaaagtaat-tgtatcttctctaagtttgttcatcttgcatggaaatggtaatatagttacgt 289  Q
     |||||||||| ||||||||||||||| ||  || ||| |||||||  |||||||||||||| |||| |  ||||||||||| ||||||  |||| | ||    
T  23125354 tgaggtacatatgtgtatcttggaattgtaagtgattggaagtaataagtatcttctctaagcttgtcccgcttgcatggaagtggtaagttagtcaagt 23125255  T
Q  290 ctgatggtgggatgagtgacaatctgagcaaaatct 325  Q
    |||   |||||| || ||||||| |||||| |||||    
T  23125254 ctggaagtgggaagaatgacaatatgagcacaatct 23125219  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 345 - 430
Target Start/End: Original strand, 12029493 - 12029578
Alignment:
Q  345 attctaacttcttgctattgtgtttcttgaggacaagaaacggtttaagtttggggttgtgatgacggagcatcatatgatatttt 430  Q
    ||||| ||||||| ||||| |||| ||||||||||| |||   ||||||||||||||||||||||| |||||||||||||||||||    
T  12029493 attcttacttctttctattttgttacttgaggacaaaaaatattttaagtttggggttgtgatgaccgagcatcatatgatatttt 12029578  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 49; E-Value: 9e-19
Query Start/End: Original strand, 404 - 488
Target Start/End: Complemental strand, 25594875 - 25594791
Alignment:
Q  404 tgatgacggagcatcatatgatatttttggttatgtttttagtacttttctttgaatttaaagacaaataggatgagaattagag 488  Q
    ||||||| |||||||||||  ||||||||| |||||||||||||||||| |||| |||| |||||||||| ||||||| ||||||    
T  25594875 tgatgacagagcatcatatattatttttggctatgtttttagtacttttatttgcatttgaagacaaataagatgagagttagag 25594791  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 412 - 495
Target Start/End: Complemental strand, 17382210 - 17382127
Alignment:
Q  412 gagcatcatatgatatttttggttatgtttttagtacttttctttgaatttaaagacaaataggatgagaattagagtagttgt 495  Q
    |||||||||||||||||||| | ||||| |||||||||||| |||| |||| |||||||||| ||||||| |||||| ||||||    
T  17382210 gagcatcatatgatattttttgctatgtgtttagtacttttttttgcatttgaagacaaataagatgagagttagaggagttgt 17382127  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 81 - 235
Target Start/End: Original strand, 19331160 - 19331315
Alignment:
Q  81 tggtgatatagaccttgaatgtctatttagaattgcttcaatctcatagtaaggtacaatcacatgatgact-gagtgtgacaaatgccttgaccagccc 179  Q
    |||||||||  | ||||||||||| | || |||||||||||||||| || |||||| |||||||||| | || ||||||||||||||| || |||| ||     
T  19331160 tggtgatatgtatcttgaatgtctctatataattgcttcaatctcaaagcaaggtagaatcacatgacggctggagtgtgacaaatgctttcaccaacca 19331259  T
Q  180 catcggctttaggaggtacatacgtgtatcttggaattttatctggttgaaagtaa 235  Q
     |  |  ||||||||||||||| |||||| |||||||| ||  |||||||||||||    
T  19331260 tactgattttaggaggtacatatgtgtattttggaattgtaagtggttgaaagtaa 19331315  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 404 - 495
Target Start/End: Original strand, 30072111 - 30072201
Alignment:
Q  404 tgatgacggagcatcatatgatatttttggttatgtttttagtacttttctttgaatttaaagacaaataggatgagaattagagtagttgt 495  Q
    |||||||||| |||||| || |||||| || |||||||| |||||||||||||| |||| |||||||||| |||||||||||||| ||||||    
T  30072111 tgatgacggaacatcatgtgttatttt-ggctatgttttaagtacttttctttggatttgaagacaaataagatgagaattagaggagttgt 30072201  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 346 - 482
Target Start/End: Original strand, 22754829 - 22754958
Alignment:
Q  346 ttctaacttcttgctattgtgtttcttgaggacaagaaacggtttaagtttggggttgtgatgacggagcatcatatgatatttttggttatgtttttag 445  Q
    ||||||||| ||||||||||||| |||| |||||||||||  |||||||||||| || | ||||  |||      |||| ||||| || |||||||||||    
T  22754829 ttctaactttttgctattgtgttgcttgtggacaagaaacattttaagtttgggtttcttatgatagag------atgacatttt-ggatatgtttttag 22754921  T
Q  446 tacttttctttgaatttaaagacaaataggatgagaa 482  Q
    ||| |||||||| ||||||||||||||| ||||||||    
T  22754922 tacgtttctttgcatttaaagacaaataagatgagaa 22754958  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 403 - 478
Target Start/End: Complemental strand, 22968026 - 22967951
Alignment:
Q  403 gtgatgacggagcatcatatgatatttttggttatgtttttagtacttttctttgaatttaaagacaaataggatg 478  Q
    |||||||||||| ||||||||||||||| || ||||||||||||| ||||||||| || | |||||||||| ||||    
T  22968026 gtgatgacggagtatcatatgatattttaggctatgtttttagtagttttctttgcatgttaagacaaataagatg 22967951  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 428 - 495
Target Start/End: Original strand, 24517310 - 24517377
Alignment:
Q  428 ttttggttatgtttttagtacttttctttgaatttaaagacaaataggatgagaattagagtagttgt 495  Q
    |||| |||||||||||||| |||| ||||| |||| |||||||||| |||||||||||||| ||||||    
T  24517310 ttttagttatgtttttagttctttgctttgcatttgaagacaaataagatgagaattagaggagttgt 24517377  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 495 - 560
Target Start/End: Original strand, 11273683 - 11273748
Alignment:
Q  495 ttgatggacgaaattagcaagttcatgaaatcgtaacaagtaataaagtagtcagattatcgttct 560  Q
    ||||||||| ||||| |||||| ||| |||| |||||||||||||||||||| || ||||||||||    
T  11273683 ttgatggacaaaattggcaagtgcatcaaattgtaacaagtaataaagtagtaagtttatcgttct 11273748  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 412 - 495
Target Start/End: Complemental strand, 12340187 - 12340106
Alignment:
Q  412 gagcatcatatgatatttttggttatgtttttagtacttttctttgaatttaaagacaaataggatgagaattagagtagttgt 495  Q
    ||||||||||||| ||||| || ||||||||||||| ||||||||| |||| |||||||||| | ||||| |||||| ||||||    
T  12340187 gagcatcatatgacatttt-ggctatgtttttagta-ttttctttgcatttgaagacaaataaggtgagagttagaggagttgt 12340106  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 404 - 481
Target Start/End: Original strand, 22229741 - 22229818
Alignment:
Q  404 tgatgacggagcatcatatgatatttttggttatgtttt-tagtacttttctttgaatttaaagacaaataggatgaga 481  Q
    ||||||| ||||||||||||  ||||| || |||||||| ||||||||||||||| |||| |||||||||| |||||||    
T  22229741 tgatgacagagcatcatatgtcatttt-ggctatgttttttagtacttttctttgcatttgaagacaaataagatgaga 22229818  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 345 - 462
Target Start/End: Complemental strand, 22644105 - 22643989
Alignment:
Q  345 attctaacttcttgctattgtgtttcttgaggacaagaaacggtttaagtttggggttgtgatgacggagcatcatatgatatttttggttatgttttta 444  Q
    |||| |||||||||| ||| |||| |||||||| ||| |||||||||||||| || |||||||||  ||  | ||||| |||||||| | ||| ||||||    
T  22644105 attccaacttcttgccattttgttgcttgaggataagcaacggtttaagttt-ggtttgtgatgattgaataacatataatatttttaggtatattttta 22644007  T
Q  445 gtacttttctttgaattt 462  Q
    ||  ||||||||| ||||    
T  22644006 gttattttctttgtattt 22643989  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 495 - 567
Target Start/End: Complemental strand, 17768713 - 17768641
Alignment:
Q  495 ttgatggacgaaattagcaagttcatgaaatcgtaacaagtaataaagtagtcagattatcgttcttcacagg 567  Q
    ||||||||||||||| ||||||  |  ||||||||| ||||||||||||||| || |||| ||||| ||||||    
T  17768713 ttgatggacgaaattggcaagtaaaccaaatcgtaagaagtaataaagtagtaagtttattgttctccacagg 17768641  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 496 - 560
Target Start/End: Complemental strand, 19571112 - 19571048
Alignment:
Q  496 tgatggacgaaattagcaagttcatgaaatcgtaacaagtaataaagtagtcagattatcgttct 560  Q
    |||||||| ||||| |||||| ||  |||||||||||| |||||||||||| || ||||||||||    
T  19571112 tgatggactaaatttgcaagtgcaccaaatcgtaacaaataataaagtagtaagtttatcgttct 19571048  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #22
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 370 - 410
Target Start/End: Complemental strand, 20860470 - 20860430
Alignment:
Q  370 cttgaggacaagaaacggtttaagtttggggttgtgatgac 410  Q
    |||||||||||| ||| ||||||||||||||||||||||||    
T  20860470 cttgaggacaagcaacagtttaagtttggggttgtgatgac 20860430  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #23
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 370 - 410
Target Start/End: Complemental strand, 34133906 - 34133866
Alignment:
Q  370 cttgaggacaagaaacggtttaagtttggggttgtgatgac 410  Q
    |||||||||||| ||||||| ||||||||||||||||||||    
T  34133906 cttgaggacaaggaacggttcaagtttggggttgtgatgac 34133866  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #24
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 350 - 397
Target Start/End: Complemental strand, 11274595 - 11274548
Alignment:
Q  350 aacttcttgctattgtgtttcttgaggacaagaaacggtttaagtttg 397  Q
    |||||||||||| |||||| |||||||||||| ||| |||||||||||    
T  11274595 aacttcttgctactgtgttgcttgaggacaagtaacagtttaagtttg 11274548  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #25
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 496 - 546
Target Start/End: Complemental strand, 24519014 - 24518964
Alignment:
Q  496 tgatggacgaaattagcaagttcatgaaatcgtaacaagtaataaagtagt 546  Q
    |||||||||||| | ||||||  || |||||||||||||||||||||||||    
T  24519014 tgatggacgaaactggcaagtgtatcaaatcgtaacaagtaataaagtagt 24518964  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #26
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 403 - 473
Target Start/End: Original strand, 24846192 - 24846262
Alignment:
Q  403 gtgatgacggagcatcatatgatatttttggttatgtttttagtacttttctttgaatttaaagacaaata 473  Q
    ||||||||||||||| ||||||| |||| || ||| ||||||||   |||||||| |||| ||||||||||    
T  24846192 gtgatgacggagcatgatatgatgttttaggctatatttttagttactttctttgcatttgaagacaaata 24846262  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #27
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 404 - 480
Target Start/End: Original strand, 15205577 - 15205653
Alignment:
Q  404 tgatgacggagcatcatatgatatttttggttatgtttttagta-cttttctttgaatttaaagacaaataggatgag 480  Q
    ||||||| ||||||||||||||| |||||  |||||||||||||  |||| |||| ||||||| ||||||| ||||||    
T  15205577 tgatgacagagcatcatatgata-ttttgactatgtttttagtattttttatttgcatttaaatacaaataagatgag 15205653  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #28
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 496 - 565
Target Start/End: Original strand, 18451061 - 18451130
Alignment:
Q  496 tgatggacgaaattagcaagttcatgaaatcgtaacaagtaataaagtagtcagattatcgttcttcaca 565  Q
    |||||||||||||| ||||||  |  | |||||||||||||||||||| || || |||||||||| ||||    
T  18451061 tgatggacgaaattggcaagtggaccagatcgtaacaagtaataaagttgtaagtttatcgttctccaca 18451130  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #29
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 370 - 410
Target Start/End: Complemental strand, 22938089 - 22938049
Alignment:
Q  370 cttgaggacaagaaacggtttaagtttggggttgtgatgac 410  Q
    |||||||||||| || |||| ||||||||||||||||||||    
T  22938089 cttgaggacaaggaatggttcaagtttggggttgtgatgac 22938049  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #30
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 500 - 560
Target Start/End: Complemental strand, 25682207 - 25682147
Alignment:
Q  500 ggacgaaattagcaagttcatgaaatcgtaacaagtaataaagtagtcagattatcgttct 560  Q
    |||||||||| |||||| ||  |||||||||||||||||||| |||| |  ||||||||||    
T  25682207 ggacgaaattggcaagtgcactaaatcgtaacaagtaataaaatagtaattttatcgttct 25682147  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #31
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 401 - 473
Target Start/End: Original strand, 26070404 - 26070475
Alignment:
Q  401 ttgtgatgacggagcatcatatgatatttttggttatgtttttagtacttttctttgaatttaaagacaaata 473  Q
    |||| |||| ||| ||||||||||| ||||||| ||||||||||||  ||||||||| |||| ||| ||||||    
T  26070404 ttgtaatgatggaacatcatatgat-tttttggctatgtttttagttattttctttgcattttaaggcaaata 26070475  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 110; Significance: 4e-55; HSPs: 45)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 110; E-Value: 4e-55
Query Start/End: Original strand, 22 - 321
Target Start/End: Original strand, 21471325 - 21471628
Alignment:
Q  22 aaatataccccaccttaacctcaaccacgtgataaccttgaaaatgccttcg---gtgtgtatggtgatatagaccttgaatgtctatttagaattgctt 118  Q
    ||||||| || | |||||||| |  ||||| |||||||||||||  |||| |   |||||| || ||||||| || ||||||||||||||||||||||||    
T  21471325 aaatatatcctaacttaaccttagtcacgttataaccttgaaaagtcctttgtatgtgtgtgtgatgatatatacattgaatgtctatttagaattgctt 21471424  T
Q  119 caatctcatagtaaggtacaatcacatgatgactg-agtgtgacaaatgccttgaccagccccatcggctttaggaggtacatacgtgtatcttggaatt 217  Q
    ||||||||||| ||||||||||||||||| ||||| ||| || |||||||||||||||||||||| || ||||||||  |||||| ||||||||||||||    
T  21471425 caatctcatagcaaggtacaatcacatgacgactggagtatggcaaatgccttgaccagccccattggatttaggagacacatacatgtatcttggaatt 21471524  T
Q  218 ttatctggttgaaagtaattgtatcttctctaagtttgttcatcttgcatggaaatggtaatatagttacgtctgatggtgggatgagtgacaatctgag 317  Q
     ||  |||||||||||||  ||||| |||||||||||| ||  |||||||| |  ||||||  |||| | || |||| |||||| || ||||||||||||    
T  21471525 gtacgtggttgaaagtaagagtatcctctctaagtttgatccacttgcatgaaggtggtaagctagtcaagtttgatagtgggaggaatgacaatctgag 21471624  T
Q  318 caaa 321  Q
    ||||    
T  21471625 caaa 21471628  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 73; E-Value: 4e-33
Query Start/End: Original strand, 345 - 481
Target Start/End: Original strand, 7494584 - 7494720
Alignment:
Q  345 attctaacttcttgctattgtgtttcttgaggacaagaaacggtttaagtttggggttgtgatgacggagcatcatatgatatttttggttatgttttta 444  Q
    ||||| |||||||||||||||||| |||||||||||| ||| ||||||||||| |||||||||||  |||||||| ||||||||||||| |||  |||||    
T  7494584 attctgacttcttgctattgtgttgcttgaggacaagcaacagtttaagtttgtggttgtgatgaatgagcatcacatgatatttttggctattctttta 7494683  T
Q  445 gtacttttctttgaatttaaagacaaataggatgaga 481  Q
    ||||||||||||| | || |||||||| ||| |||||    
T  7494684 gtacttttctttgcacttgaagacaaacaggttgaga 7494720  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 70; E-Value: 3e-31
Query Start/End: Original strand, 22 - 252
Target Start/End: Original strand, 5721929 - 5722164
Alignment:
Q  22 aaatataccccacctt-aacctcaaccacgtgataaccttgaaaatgcct---tcggtgtgtatggtgatatagaccttgaatgtctatttagaattgct 117  Q
    ||||||| |||||||| ||||| | |||||| |||||||||||||  |||   |  |||||| |||| ||||   ||||||||| |||||||||||||||    
T  5721929 aaatatatcccacctttaacctaagccacgttataaccttgaaaaaacctctatatgtgtgtctggtaatatgtgccttgaatgcctatttagaattgct 5722028  T
Q  118 tcaatctcatagtaaggtacaatcacatgatgact-gagtgtgacaaatgccttgaccagccccatcggctttaggaggtacatacgtgtatcttggaat 216  Q
    |||||||||||| ||| |||||||| ||||  ||| |||||||||||||  |||  ||| |||||  | ||||||||| |||||||||||||||||||||    
T  5722029 tcaatctcatagcaagatacaatcaaatgactactggagtgtgacaaatttctttcccatccccactgactttaggagatacatacgtgtatcttggaat 5722128  T
Q  217 tttatctggttgaaagtaattgtatcttctctaagt 252  Q
    | ||  |||||||||| ||  |||||||||||||||    
T  5722129 tgtaagtggttgaaagcaagagtatcttctctaagt 5722164  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 68; E-Value: 4e-30
Query Start/End: Original strand, 349 - 495
Target Start/End: Complemental strand, 20471049 - 20470902
Alignment:
Q  349 taacttcttgctattgtgtttcttgaggacaag-aaacggtttaagtttggggttgtgatgacggagcatcatatgatatttttggttatgtttttagta 447  Q
    |||||||||||||| ||||| |||||||||||  ||||  |||||||||||||||||||||||| ||||||||||||  ||||||| | |||||||||||    
T  20471049 taacttcttgctatcgtgttgcttgaggacaaacaaacaatttaagtttggggttgtgatgacgaagcatcatatgaattttttggctttgtttttagta 20470950  T
Q  448 cttttctttgaatttaaagacaaataggatgagaattagagtagttgt 495  Q
    ||||| |||  || | |||||||||| ||||| |||||||| ||||||    
T  20470949 cttttatttatatgtgaagacaaataagatgataattagaggagttgt 20470902  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 65; E-Value: 3e-28
Query Start/End: Original strand, 349 - 488
Target Start/End: Original strand, 21471674 - 21471813
Alignment:
Q  349 taacttcttgctattgtgtttcttgaggacaagaaacggtttaagtttggggttgtgatgacggagcatcatatgatatttttggttatgtttttagtac 448  Q
    |||||||| |||||||| || |||||||||||  ||| |||||||||||||||||||||||| ||||||||||||  | |||||||||||||||||||||    
T  21471674 taacttctagctattgtattgcttgaggacaatcaacagtttaagtttggggttgtgatgacagagcatcatatgcca-ttttggttatgtttttagtac 21471772  T
Q  449 -ttttctttgaatttaaagacaaataggatgagaattagag 488  Q
     ||||| ||| |||| |||||||||| ||||| | ||||||    
T  21471773 tttttccttgcatttgaagacaaataagatgatatttagag 21471813  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 56; E-Value: 6e-23
Query Start/End: Original strand, 404 - 495
Target Start/End: Original strand, 29544451 - 29544542
Alignment:
Q  404 tgatgacggagcatcatatgatatttttggttatgtttttagtacttttctttgaatttaaagacaaataggatgagaattagagtagttgt 495  Q
    |||||| ||||||||||||||||||||||| |||||||||| || ||||||||| |||| |||||||||| ||||||| |||||| ||||||    
T  29544451 tgatgaaggagcatcatatgatatttttggctatgtttttattaattttctttgcatttgaagacaaataagatgagagttagaggagttgt 29544542  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 345 - 456
Target Start/End: Complemental strand, 9761646 - 9761537
Alignment:
Q  345 attctaacttcttgctattgtgtttcttgaggacaagaaacggtttaagtttggggttgtgatgacggagcatcatatgatatttttggttatgttttta 444  Q
    ||||||||||| ||||||||| |  |||||||||||| |||  ||||| ||||||||||||||||| ||||||||||||| | |||||| || |||||||    
T  9761646 attctaacttcatgctattgtctagcttgaggacaagcaacaatttaa-tttggggttgtgatgacagagcatcatatgaca-ttttggctacgttttta 9761549  T
Q  445 gtacttttcttt 456  Q
    ||||||||||||    
T  9761548 gtacttttcttt 9761537  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 349 - 446
Target Start/End: Complemental strand, 3269220 - 3269123
Alignment:
Q  349 taacttcttgctattgtgtttcttgaggacaagaaacggtttaagtttggggttgtgatgacggagcatcatatgatatttttggttatgtttttagt 446  Q
    |||||||||| |||| |||| |  |||||||| |||||||||||||||| |||||||||||| |||| |||||||||| ||| || ||||||||||||    
T  3269220 taacttcttgttattttgttgcgagaggacaataaacggtttaagtttgaggttgtgatgaccgagcttcatatgatactttaggctatgtttttagt 3269123  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 49; E-Value: 9e-19
Query Start/End: Original strand, 94 - 217
Target Start/End: Original strand, 7955796 - 7955920
Alignment:
Q  94 cttgaatgtctatttagaattgcttcaatctcatagtaaggtacaatcacatgatgact-gagtgtgacaaatgccttgaccagccccatcggctttagg 192  Q
    ||||| ||||| ||| ||||||||| | |||||||  |||||||||||||||||||||| ||||| | ||||||||||||  |||||  | |  ||||||    
T  7955796 cttgagtgtctgtttggaattgctttagtctcataacaaggtacaatcacatgatgactggagtggggcaaatgccttgagaagccctgttgaatttagg 7955895  T
Q  193 aggtacatacgtgtatcttggaatt 217  Q
    ||||||| |||||||||||||||||    
T  7955896 aggtacacacgtgtatcttggaatt 7955920  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 404 - 500
Target Start/End: Complemental strand, 2632619 - 2632523
Alignment:
Q  404 tgatgacggagcatcatatgatatttttggttatgtttttagtactttt-ctttgaatttaaagacaaataggatgagaattagagtagttgttgatg 500  Q
    ||||||| ||| ||| ||||||||||||| |||||||| |||||||||| ||||| |||||||||| ||||| |||||| |||||| |||||||||||    
T  2632619 tgatgacagagtatcgtatgatatttttg-ttatgtttatagtactttttctttgcatttaaagactaatagtatgagagttagaggagttgttgatg 2632523  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 404 - 473
Target Start/End: Original strand, 7142030 - 7142099
Alignment:
Q  404 tgatgacggagcatcatatgatatttttggttatgtttttagtacttttctttgaatttaaagacaaata 473  Q
    ||||||| ||||||||||||| |||||||| |||||||||| || ||||||||| |||||||||||||||    
T  7142030 tgatgacagagcatcatatgacatttttggctatgtttttaatagttttctttgcatttaaagacaaata 7142099  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 394 - 456
Target Start/End: Complemental strand, 9802057 - 9801996
Alignment:
Q  394 tttggggttgtgatgacggagcatcatatgatatttttggttatgtttttagtacttttcttt 456  Q
    ||||||||||||||||| ||||||||||||| | |||||| || |||||||||||||||||||    
T  9802057 tttggggttgtgatgacagagcatcatatgaca-ttttggctacgtttttagtacttttcttt 9801996  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 495 - 565
Target Start/End: Original strand, 21544679 - 21544749
Alignment:
Q  495 ttgatggacgaaattagcaagttcatgaaatcgtaacaagtaataaagtagtcagattatcgttcttcaca 565  Q
    ||||||||||||||| |||||| ||  ||||||||||||||||||||||||| || ||| |||||| ||||    
T  21544679 ttgatggacgaaattggcaagtgcaccaaatcgtaacaagtaataaagtagtaagtttaccgttctccaca 21544749  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 406 - 470
Target Start/End: Complemental strand, 2353421 - 2353357
Alignment:
Q  406 atgacggagcatcatatgatatttttggttatgtttttagtacttttctttgaatttaaagacaa 470  Q
    ||||||||||||| ||||||||||| || ||||||||||||  ||||||||| |||| |||||||    
T  2353421 atgacggagcatcgtatgatattttaggctatgtttttagttgttttctttgcatttgaagacaa 2353357  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 404 - 495
Target Start/End: Original strand, 20446171 - 20446262
Alignment:
Q  404 tgatgacggagcatcatatgatatttttggttatgtttttagtactttt-ctttgaatttaaagacaaataggatgagaattagagtagttgt 495  Q
    ||||||| ||||| ||||||||||||| | | ||||||||| ||||||| ||||| |||| ||||||| || |||||||||||||| ||||||    
T  20446171 tgatgacagagcaacatatgatattttagct-atgtttttaatactttttctttgcatttgaagacaattaagatgagaattagaggagttgt 20446262  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 404 - 496
Target Start/End: Original strand, 23124833 - 23124924
Alignment:
Q  404 tgatgacggagcatcatatgatatttttggttatgtttttagtacttttctttgaatttaaagacaaataggatgagaattagagtagttgtt 496  Q
    |||||| |||||||||| ||| ||||||   |||||||||||||| |||||||  |||| |||||||||| ||||||| |||||| |||||||    
T  23124833 tgatgatggagcatcatctgacattttttactatgtttttagtac-tttctttacatttgaagacaaataagatgagatttagaggagttgtt 23124924  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 496 - 567
Target Start/End: Complemental strand, 7494555 - 7494484
Alignment:
Q  496 tgatggacgaaattagcaagttcatgaaatcgtaacaagtaataaagtagtcagattatcgttcttcacagg 567  Q
    |||||||||||||| |||||| ||  |||||||||||||||||||| |||| || ||||| |||| ||||||    
T  7494555 tgatggacgaaattggcaagtgcaccaaatcgtaacaagtaataaattagtaagtttatcattctccacagg 7494484  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 349 - 472
Target Start/End: Complemental strand, 16536811 - 16536689
Alignment:
Q  349 taacttcttgctattgtgtttcttgaggacaagaaacggtttaagtttggggttgtgatgacggagcatcatatgatatttttggttatgtttttagtac 448  Q
    |||||||||  |||| |||| |||||||||||  |||  |||||||||  ||||||||||| ||| |||||| |||||||||  |||||| |||| ||      
T  16536811 taacttctttttattttgttgcttgaggacaaacaacaatttaagtttaaggttgtgatgatggaacatcatctgatattttaagttatg-ttttggtta 16536713  T
Q  449 ttttctttgaatttaaagacaaat 472  Q
    ||||||||| |||| |||||||||    
T  16536712 ttttctttgcatttgaagacaaat 16536689  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 345 - 472
Target Start/End: Complemental strand, 16577513 - 16577387
Alignment:
Q  345 attctaacttcttgctattgtgtttcttgaggacaagaaacggtttaagtttggggttgtgatgacggagcatcatatgatatttttggttatgttttta 444  Q
    |||||||||||||  |||| | || |||||||||||  |||  |||||||||  ||||||||||| ||| ||||||||||||||||  | ||||||||      
T  16577513 attctaacttctttttatttttttgcttgaggacaaacaacaatttaagtttaaggttgtgatgatggaacatcatatgatattttaaggtatgttttgg 16577414  T
Q  445 gtacttttctttgaatttaaagacaaat 472  Q
     || ||||||||| |||| |||||||||    
T  16577413 cta-ttttctttgcatttgaagacaaat 16577387  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 345 - 472
Target Start/End: Original strand, 16588149 - 16588275
Alignment:
Q  345 attctaacttcttgctattgtgtttcttgaggacaagaaacggtttaagtttggggttgtgatgacggagcatcatatgatatttttggttatgttttta 444  Q
    |||||||||||||  |||| | || |||||||||||  |||  |||||||||  ||||||||||| ||| ||||||||||||||||  | ||||||||      
T  16588149 attctaacttctttttatttttttgcttgaggacaaacaacaatttaagtttaaggttgtgatgatggaacatcatatgatattttaaggtatgttttgg 16588248  T
Q  445 gtacttttctttgaatttaaagacaaat 472  Q
     || ||||||||| |||| |||||||||    
T  16588249 cta-ttttctttgcatttgaagacaaat 16588275  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 349 - 472
Target Start/End: Original strand, 16628851 - 16628973
Alignment:
Q  349 taacttcttgctattgtgtttcttgaggacaagaaacggtttaagtttggggttgtgatgacggagcatcatatgatatttttggttatgtttttagtac 448  Q
    |||||||||  |||| |||| |||||||||||  |||  |||||||||  ||||||||||| ||| |||||| |||||||||  |||||| |||| ||      
T  16628851 taacttctttttattttgttgcttgaggacaaacaacaatttaagtttaaggttgtgatgatggaacatcatctgatattttaagttatg-ttttggtta 16628949  T
Q  449 ttttctttgaatttaaagacaaat 472  Q
    ||||||||| |||| |||||||||    
T  16628950 ttttctttgcatttgaagacaaat 16628973  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 345 - 427
Target Start/End: Original strand, 1074341 - 1074422
Alignment:
Q  345 attctaacttcttgctattgtgtttcttgaggacaagaaacggtttaagtttggggttgtgatgacggagcatcatatgatat 427  Q
    |||||| |||||||||||| ||||  ||| ||||||| |||| ||||||||| |||||||||||| | ||||| |||||||||    
T  1074341 attctaccttcttgctattttgttgtttggggacaagcaacgatttaagtttagggttgtgatgatgtagcat-atatgatat 1074422  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 98 - 250
Target Start/End: Original strand, 1074076 - 1074229
Alignment:
Q  98 aatgtctatttagaattgcttcaatctcatagtaaggtacaatcacatgatgact-gagtgtgacaaatgccttgaccagccccatcggctttaggaggt 196  Q
    ||||||| |||  ||||||||||||||||||  ||||||||||||||||| | || |||||||  |||||||| ||||   | ||| | |||||||||||    
T  1074076 aatgtctgtttgaaattgcttcaatctcataacaaggtacaatcacatgacgtctggagtgtggaaaatgcctagacctttcacattgactttaggaggt 1074175  T
Q  197 acatacgtgtatcttggaattttatctggttgaaagtaattgtatcttctctaa 250  Q
    ||||| |||  ||||| ||||  |  || ||||||||||  |||| ||||||||    
T  1074176 acatatgtgcgtcttgtaattggaagtgattgaaagtaagagtatattctctaa 1074229  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #24
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 345 - 406
Target Start/End: Original strand, 7956058 - 7956119
Alignment:
Q  345 attctaacttcttgctattgtgtttcttgaggacaagaaacggtttaagtttggggttgtga 406  Q
    |||||| | ||||| |||| |||| ||| ||||||||||||| |||||||||||||||||||    
T  7956058 attctaccgtcttgatattttgttgcttcaggacaagaaacgatttaagtttggggttgtga 7956119  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #25
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 405 - 462
Target Start/End: Original strand, 18496498 - 18496555
Alignment:
Q  405 gatgacggagcatcatatgatatttttggttatgtttttagtacttttctttgaattt 462  Q
    ||||| |||||| ||||||||||||| || ||||||||||||| ||||||||| ||||    
T  18496498 gatgatggagcaccatatgatattttaggctatgtttttagtagttttctttgcattt 18496555  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #26
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 404 - 456
Target Start/End: Complemental strand, 21545984 - 21545929
Alignment:
Q  404 tgatgacggagcat---catatgatatttttggttatgtttttagtacttttcttt 456  Q
    ||||||||||||||   |||||||||||||||  ||||||||||||||||||||||    
T  21545984 tgatgacggagcatgatcatatgatatttttgactatgtttttagtacttttcttt 21545929  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #27
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 495 - 563
Target Start/End: Complemental strand, 7143639 - 7143571
Alignment:
Q  495 ttgatggacgaaattagcaagttcatgaaatcgtaacaagtaataaagtagtcagattatcgttcttca 563  Q
    |||||||| ||||||  ||||| ||  ||||||||||||||||||||||||  || |||||||||||||    
T  7143639 ttgatggatgaaattgacaagtgcaccaaatcgtaacaagtaataaagtagcaagtttatcgttcttca 7143571  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #28
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 495 - 567
Target Start/End: Original strand, 7776350 - 7776422
Alignment:
Q  495 ttgatggacgaaattagcaagttcatgaaatcgtaacaagtaataaagtagtcagattatcgttcttcacagg 567  Q
    |||||| || |||||||||||| ||  ||||| |||||||||| |||||||| || |||||||||| ||||||    
T  7776350 ttgatgaacaaaattagcaagtgcaccaaatcttaacaagtaacaaagtagtaagtttatcgttctccacagg 7776422  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #29
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 370 - 410
Target Start/End: Original strand, 13287676 - 13287716
Alignment:
Q  370 cttgaggacaagaaacggtttaagtttggggttgtgatgac 410  Q
    |||||||||||||||| || |||||||||||||||||||||    
T  13287676 cttgaggacaagaaacagtctaagtttggggttgtgatgac 13287716  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #30
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 370 - 410
Target Start/End: Complemental strand, 26137074 - 26137034
Alignment:
Q  370 cttgaggacaagaaacggtttaagtttggggttgtgatgac 410  Q
    |||||||||||| ||||||| ||||||||||||||||||||    
T  26137074 cttgaggacaaggaacggttcaagtttggggttgtgatgac 26137034  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #31
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 501 - 560
Target Start/End: Complemental strand, 9071451 - 9071392
Alignment:
Q  501 gacgaaattagcaagttcatgaaatcgtaacaagtaataaagtagtcagattatcgttct 560  Q
    |||||||||||||| | ||| |||||||||||||||| |||||||| || || |||||||    
T  9071451 gacgaaattagcaactgcatcaaatcgtaacaagtaaaaaagtagtaagtttttcgttct 9071392  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #32
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 496 - 567
Target Start/End: Original strand, 18494555 - 18494626
Alignment:
Q  496 tgatggacgaaattagcaagttcatgaaatcgtaacaagtaataaagtagtcagattatcgttcttcacagg 567  Q
    |||| ||||||||| |||||| ||  ||||||||||||||||||| ||||| || |||| ||||| ||||||    
T  18494555 tgatagacgaaattggcaagtgcaccaaatcgtaacaagtaataaggtagtaagtttattgttctccacagg 18494626  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #33
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 491 - 546
Target Start/End: Complemental strand, 21473094 - 21473039
Alignment:
Q  491 gttgttgatggacgaaattagcaagttcatgaaatcgtaacaagtaataaagtagt 546  Q
    |||||||||||||||||||| ||||| ||  ||||| |||||||| ||||||||||    
T  21473094 gttgttgatggacgaaattatcaagtgcaccaaatcataacaagttataaagtagt 21473039  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #34
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 416 - 481
Target Start/End: Original strand, 7815267 - 7815332
Alignment:
Q  416 atcatatgatatttttggttatgtttttagtacttttct-ttgaatttaaagacaaataggatgaga 481  Q
    ||||||||||||||| ||||||||||||||||||||| | ||| |||| |||| ||||| |||||||    
T  7815267 atcatatgatatttt-ggttatgtttttagtacttttttgttgcatttgaagataaataagatgaga 7815332  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #35
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 400 - 446
Target Start/End: Complemental strand, 22532830 - 22532784
Alignment:
Q  400 gttgtgatgacggagcatcatatgatatttttggttatgtttttagt 446  Q
    ||||| |||| |||||||||||||||||||| || ||||||||||||    
T  22532830 gttgtaatgatggagcatcatatgatattttaggctatgtttttagt 22532784  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #36
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 522 - 563
Target Start/End: Complemental strand, 7152157 - 7152116
Alignment:
Q  522 aaatcgtaacaagtaataaagtagtcagattatcgttcttca 563  Q
    ||||||||||||||||||||||||| || |||||||| ||||    
T  7152157 aaatcgtaacaagtaataaagtagtaagtttatcgtttttca 7152116  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #37
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 496 - 557
Target Start/End: Complemental strand, 14074547 - 14074486
Alignment:
Q  496 tgatggacgaaattagcaagttcatgaaatcgtaacaagtaataaagtagtcagattatcgt 557  Q
    |||||||||||| | | |||| ||  ||||||||||||||||||||||||| || |||||||    
T  14074547 tgatggacgaaactggaaagtgcacaaaatcgtaacaagtaataaagtagtaagtttatcgt 14074486  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #38
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 496 - 557
Target Start/End: Complemental strand, 14384575 - 14384514
Alignment:
Q  496 tgatggacgaaattagcaagttcatgaaatcgtaacaagtaataaagtagtcagattatcgt 557  Q
    |||||||||||| | | |||| ||  ||||||||||||||||||||||||| || |||||||    
T  14384575 tgatggacgaaactggaaagtgcacaaaatcgtaacaagtaataaagtagtaagtttatcgt 14384514  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #39
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 370 - 410
Target Start/End: Original strand, 2506786 - 2506826
Alignment:
Q  370 cttgaggacaagaaacggtttaagtttggggttgtgatgac 410  Q
    |||||||||||| |||  |||||||||||||||||||||||    
T  2506786 cttgaggacaagcaactatttaagtttggggttgtgatgac 2506826  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #40
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 370 - 410
Target Start/End: Complemental strand, 4596958 - 4596918
Alignment:
Q  370 cttgaggacaagaaacggtttaagtttggggttgtgatgac 410  Q
    |||||||||||| || |||| ||||||||||||||||||||    
T  4596958 cttgaggacaaggaatggttcaagtttggggttgtgatgac 4596918  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #41
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 370 - 410
Target Start/End: Original strand, 15170730 - 15170770
Alignment:
Q  370 cttgaggacaagaaacggtttaagtttggggttgtgatgac 410  Q
    |||||||||||| ||| ||||| ||||||||||||||||||    
T  15170730 cttgaggacaagcaacagtttatgtttggggttgtgatgac 15170770  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #42
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 93 - 145
Target Start/End: Original strand, 16166702 - 16166754
Alignment:
Q  93 ccttgaatgtctatttagaattgcttcaatctcatagtaaggtacaatcacat 145  Q
    |||||||||||| |||||||||| |||||| | ||| || |||||||||||||    
T  16166702 ccttgaatgtctgtttagaattgtttcaattttataatatggtacaatcacat 16166754  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #43
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 370 - 410
Target Start/End: Complemental strand, 19154949 - 19154909
Alignment:
Q  370 cttgaggacaagaaacggtttaagtttggggttgtgatgac 410  Q
    |||||||||||| ||| | ||||||||||||||||||||||    
T  19154949 cttgaggacaagcaacagattaagtttggggttgtgatgac 19154909  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #44
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 370 - 410
Target Start/End: Complemental strand, 20754348 - 20754308
Alignment:
Q  370 cttgaggacaagaaacggtttaagtttggggttgtgatgac 410  Q
    |||||||||||| ||| | ||||||||||||||||||||||    
T  20754348 cttgaggacaagcaacagattaagtttggggttgtgatgac 20754308  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #45
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 370 - 410
Target Start/End: Original strand, 39270239 - 39270279
Alignment:
Q  370 cttgaggacaagaaacggtttaagtttggggttgtgatgac 410  Q
    |||||||||||| |||  |||||||||||||||||||||||    
T  39270239 cttgaggacaagcaacaatttaagtttggggttgtgatgac 39270279  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 101; Significance: 9e-50; HSPs: 36)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 101; E-Value: 9e-50
Query Start/End: Original strand, 94 - 325
Target Start/End: Complemental strand, 16052789 - 16052557
Alignment:
Q  94 cttgaatgtctatttagaattgcttcaatctcatagtaaggtacaatcacatgatgactga-gtgtgacaaatgccttgaccagccccatcggctttagg 192  Q
    ||||||||||| ||| |||||||||||||||||||| ||||||||||||||||| || ||| ||||| ||||||||||||||| |||||   ||||||||    
T  16052789 cttgaatgtctgtttcgaattgcttcaatctcatagcaaggtacaatcacatgacgattgaagtgtggcaaatgccttgaccaaccccactagctttagg 16052690  T
Q  193 aggtacatacgtgtatcttggaattttatctggttgaaagtaattgtatcttctctaagtttgttcatcttgcatggaaatggtaatatagttacgtctg 292  Q
    ||||||||||| ||||||||||||| ||| |||||||||||||   |||  ||| ||||| |||||| ||||||| ||| ||||||  |||||| || ||    
T  16052689 aggtacatacgcgtatcttggaattgtatgtggttgaaagtaagaatatactctttaagtctgttcagcttgcatagaagtggtaagctagttaagtttg 16052590  T
Q  293 atggtgggatgagtgacaatctgagcaaaatct 325  Q
    ||| ||||| ||||| |||||||||| ||||||    
T  16052589 atgatgggaagagtggcaatctgagccaaatct 16052557  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 78; E-Value: 5e-36
Query Start/End: Original strand, 74 - 258
Target Start/End: Complemental strand, 28901869 - 28901685
Alignment:
Q  74 gtgtgtatggtgatatagaccttgaatgtctatttagaattgcttcaatctcatagtaaggtacaatcacatgatgactga-gtgtgacaaatgccttga 172  Q
    |||||| || ||||||| ||||| || ||||||||||||| ||||||||||| ||| ||| ||||||||||||| |||  | | ||||||||| ||||||    
T  28901869 gtgtgtgtgatgatatataccttaaaagtctatttagaat-gcttcaatctcgtagcaagatacaatcacatgacgacaaacgagtgacaaattccttga 28901771  T
Q  173 ccagccccatcggctttaggaggtacatacgtgtatcttggaattttatctggttgaaagtaattgtatcttctctaagtttgttc 258  Q
    ||| |||||  || |||||||| |||||||||||||||||||||| ||| |||||||||||||  |||||||||||||| ||||||    
T  28901770 ccaaccccaatggttttaggagatacatacgtgtatcttggaattgtatgtggttgaaagtaagagtatcttctctaagcttgttc 28901685  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 72; E-Value: 2e-32
Query Start/End: Original strand, 348 - 495
Target Start/End: Original strand, 24120107 - 24120254
Alignment:
Q  348 ctaacttcttgctattgtgtttcttgaggacaagaaacggtttaagtttggggttgtgatgacggagcatcatatgatatttttggttatgtttttagta 447  Q
    ||||||| |||||||||||||  ||||||||||| |||  ||||  || ||||||||||||||| | ||||||||||||||||| | |||||||||||||    
T  24120107 ctaacttattgctattgtgttgattgaggacaagcaacattttattttgggggttgtgatgacgaatcatcatatgatattttttgctatgtttttagta 24120206  T
Q  448 cttttctttgaatttaaagacaaataggatgagaattagagtagttgt 495  Q
    |||||||||| |||| |||| ||||| ||||||| |||||| ||||||    
T  24120207 cttttctttgcatttgaagagaaataagatgagagttagaggagttgt 24120254  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 71; E-Value: 7e-32
Query Start/End: Original strand, 345 - 495
Target Start/End: Complemental strand, 16052519 - 16052369
Alignment:
Q  345 attctaacttcttgctattgtgtttcttgaggacaagaaacggtttaagtttggggttgtgatgacggagcatcatatgatatttttggttatgttttta 444  Q
    |||||||||||||||||||||| | |   |||||||   |  |||||||||| |||||||||||||||||||||||||||||||||||| ||||||||||    
T  16052519 attctaacttcttgctattgtgctgcaaaaggacaaacgagagtttaagtttagggttgtgatgacggagcatcatatgatatttttggctatgttttta 16052420  T
Q  445 gtacttttctttgaatttaaagacaaataggatgagaattagagtagttgt 495  Q
    |||||||| |||| |||| | ||||||||  |||||| |||||| ||||||    
T  16052419 gtacttttatttgcatttgaggacaaataaaatgagagttagaggagttgt 16052369  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 69; E-Value: 1e-30
Query Start/End: Original strand, 353 - 473
Target Start/End: Complemental strand, 22894768 - 22894648
Alignment:
Q  353 ttcttgctattgtgtttcttgaggacaagaaacggtttaagtttggggttgtgatgacggagcatcatatgatatttttggttatgtttttagtactttt 452  Q
    |||||||||||||||||||||||||||||  || ||||||||||| | |||||||||| ||||||||||||| |||||| | ||||||||||||||||||    
T  22894768 ttcttgctattgtgtttcttgaggacaagggacagtttaagtttgagattgtgatgacagagcatcatatgacatttttaggtatgtttttagtactttt 22894669  T
Q  453 ctttgaatttaaagacaaata 473  Q
    ||| | |||| ||| ||||||    
T  22894668 cttcgcatttgaagccaaata 22894648  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 66; E-Value: 7e-29
Query Start/End: Original strand, 84 - 232
Target Start/End: Complemental strand, 22895054 - 22894905
Alignment:
Q  84 tgatatagaccttgaatgtctatttagaattgcttcaatctcatagtaaggtacaatcacatgatgactg-agtgtgacaaatgccttgaccagccccat 182  Q
    ||||||| ||| ||||||||| |||||||| ||||||||||||||| |||||||||||| | ||  |||| |||||| ||||||||||||| |||| ||     
T  22895054 tgatatataccctgaatgtctgtttagaatggcttcaatctcatagaaaggtacaatcatacgacaactggagtgtggcaaatgccttgactagcctcac 22894955  T
Q  183 cggctttaggaggtacatacgtgtatcttggaattttatctggttgaaag 232  Q
      |||||||||| ||||||||||| |||||||||| ||| ||||||||||    
T  22894954 tagctttaggagatacatacgtgtgtcttggaattgtatgtggttgaaag 22894905  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 397 - 487
Target Start/End: Complemental strand, 28252571 - 28252481
Alignment:
Q  397 ggggttgtgatgacggagcatcatatgatatttttggttatgtttttagtacttttctttgaatttaaagacaaataggatgagaattaga 487  Q
    ||||||||||||| ||||||||||||||||||||| |||||||||||| ||||||| || | ||||||||||||||| ||||||| |||||    
T  28252571 ggggttgtgatgaaggagcatcatatgatattttttgttatgtttttaatacttttattcgtatttaaagacaaataagatgagagttaga 28252481  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 345 - 495
Target Start/End: Complemental strand, 28901582 - 28901432
Alignment:
Q  345 attctaacttcttgctattgtgtttcttgaggacaagaaacggtttaagtttggggttgtgatgacggagcatcatatgatatttttggttatgttttta 444  Q
    ||||||||||||||||| |||||| |||||| ||||| |||| |||||||||   ||||||||   |||||||||||||| |||||||| |||| |||||    
T  28901582 attctaacttcttgctactgtgttgcttgagaacaagcaacgatttaagtttctagttgtgatattggagcatcatatgaaatttttggctatgctttta 28901483  T
Q  445 gtacttttctttgaatttaaagacaaataggatgagaattagagtagttgt 495  Q
     |||||||||||| |||| || ||||||| | |||||  ||||| ||||||    
T  28901482 atacttttctttgcatttgaatacaaataagttgagagatagaggagttgt 28901432  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 345 - 495
Target Start/End: Original strand, 10866861 - 10867011
Alignment:
Q  345 attctaacttcttgctattgtgtttcttgaggacaagaaacggtttaagtttggggttgtgatgacggagcatcatatgatatttttggttatgttttta 444  Q
    |||||| ||| |||||||| |||  |||||||||||  || ||||||| |||||||||||||||| ||| ||||||||||||||||| | |||| |||||    
T  10866861 attctatctttttgctattttgtagcttgaggacaaacaaaggtttaattttggggttgtgatgatggaacatcatatgatattttttggtatgatttta 10866960  T
Q  445 gtacttttctttgaatttaaagacaaataggatgagaattagagtagttgt 495  Q
    ||  |||||||||||||  ||| |||||| || |  | |||||||||||||    
T  10866961 gttattttctttgaattcgaaggcaaataagaggtcatttagagtagttgt 10867011  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 387 - 495
Target Start/End: Complemental strand, 13082137 - 13082029
Alignment:
Q  387 gtttaagtttggggttgtgatgacggagcatcatatgatatttttggttatgtttttagtac-ttttctttgaatttaaagacaaataggatgagaatta 485  Q
    ||||||||||||||||||||||||  | |||||||||| | ||||| ||||||||||||||| ||||||||| |||| |||||||||| ||||||| |||    
T  13082137 gtttaagtttggggttgtgatgacaaaacatcatatgaca-ttttgattatgtttttagtactttttctttgcatttgaagacaaataagatgagagtta 13082039  T
Q  486 gagtagttgt 495  Q
    ||| ||||||    
T  13082038 gaggagttgt 13082029  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 184 - 325
Target Start/End: Original strand, 24119925 - 24120066
Alignment:
Q  184 ggctttaggaggtacatacgtgtatcttggaattttatctggttgaaagtaattgtatcttctctaagtttgttcatcttgcatggaaatggtaatatag 283  Q
    |||||| | ||||||||||||||||||||||||| ||| | ||| |||||||  ||||||||||| ||| |||||  ||||||||||| ||||||  |||    
T  24119925 ggctttggcaggtacatacgtgtatcttggaattatatgtcgtttaaagtaagagtatcttctcttagtctgttctgcttgcatggaagtggtaagctag 24120024  T
Q  284 ttacgtctgatggtgggatgagtgacaatctgagcaaaatct 325  Q
    |||   ||| |||||| | |||||||||||||||| ||||||    
T  24120025 ttaaacctgttggtggaaagagtgacaatctgagccaaatct 24120066  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 49; E-Value: 9e-19
Query Start/End: Original strand, 91 - 278
Target Start/End: Original strand, 12755799 - 12755987
Alignment:
Q  91 gaccttgaatgtctatttagaattgcttcaatctcatagtaaggtacaatcacatgatgactgag-tgtgacaaatgccttgaccagccccatcggcttt 189  Q
    |||||||||||||| ||||||||| ||| ||||  |||| ||||||||| || |||| || |||  |||||||||||  ||||||| | |||   |||||    
T  12755799 gaccttgaatgtctgtttagaattcctttaatcctatagcaaggtacaaccatatgacgaatgaaatgtgacaaatgttttgaccaactccactagcttt 12755898  T
Q  190 aggaggtacatacgtgtatcttggaattttatctggttgaaagtaattgtatcttctctaagtttgttcatcttgcatggaaatggtaa 278  Q
    | ||| |||||| || |||||||||||| || | ||||||||||||  ||||||||||||||  ||| |  ||||||||||| ||||||    
T  12755899 atgagatacatatgtatatcttggaattgtaaccggttgaaagtaagagtatcttctctaagaatgtcccacttgcatggaagtggtaa 12755987  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 349 - 430
Target Start/End: Complemental strand, 5570386 - 5570305
Alignment:
Q  349 taacttcttgctattgtgtttcttgaggacaagaaacggtttaagtttggggttgtgatgacggagcatcatatgatatttt 430  Q
    |||||||||  |||||||||  ||||| ||||| |||  |||||||||||||||||||| ||||||||||||||||||||||    
T  5570386 taacttcttattattgtgttgtttgagtacaagcaacaatttaagtttggggttgtgataacggagcatcatatgatatttt 5570305  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 414 - 495
Target Start/End: Original strand, 12956431 - 12956512
Alignment:
Q  414 gcatcatatgatatttttggttatgtttttagtacttttctttgaatttaaagacaaataggatgagaattagagtagttgt 495  Q
    ||||||| |||||||||||  ||||||||||||||||||||||| |||| |||| ||||| ||||||| |||||| ||||||    
T  12956431 gcatcatgtgatatttttgtctatgtttttagtacttttctttgcatttgaagataaataagatgagagttagaggagttgt 12956512  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 414 - 495
Target Start/End: Complemental strand, 14977280 - 14977199
Alignment:
Q  414 gcatcatatgatatttttggttatgtttttagtacttttctttgaatttaaagacaaataggatgagaattagagtagttgt 495  Q
    ||||||||||||||||||   ||||||||||| ||||||||||| |||| |||||||||| ||||||| |||||| ||||||    
T  14977280 gcatcatatgatatttttaactatgtttttagcacttttctttgcattttaagacaaataagatgagagttagaggagttgt 14977199  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 349 - 432
Target Start/End: Complemental strand, 28973573 - 28973490
Alignment:
Q  349 taacttcttgctattgtgtttcttgaggacaagaaacggtttaagtttggggttgtgatgacggagcatcatatgatatttttg 432  Q
    |||||||||| |||||||||||||   |||||| ||| |||||||||||||||||  |||||  | ||||||||||||||||||    
T  28973573 taacttcttgttattgtgtttcttaccgacaagcaactgtttaagtttggggttgcaatgacaaaacatcatatgatatttttg 28973490  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 412 - 473
Target Start/End: Complemental strand, 11310379 - 11310318
Alignment:
Q  412 gagcatcatatgatatttttggttatgtttttagtacttttctttgaatttaaagacaaata 473  Q
    |||||||||||||||||||| | |||||||||||||||| |||||| |||| |||| |||||    
T  11310379 gagcatcatatgatattttttgctatgtttttagtacttatctttgcatttgaagaaaaata 11310318  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 403 - 495
Target Start/End: Original strand, 16054225 - 16054317
Alignment:
Q  403 gtgatgacggagcatcatatgatatttttggttatgtttttagtac-ttttctttgaatttaaagacaaataggatgagaattagagtagttgt 495  Q
    |||||||| ||||||||||||| | |||||| ||||| |||||||| ||||||||| |||| |||||||||| ||| ||| |||||| ||||||    
T  16054225 gtgatgacagagcatcatatgaca-ttttggctatgtctttagtactttttctttgcatttgaagacaaataagataagagttagaggagttgt 16054317  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 371 - 456
Target Start/End: Original strand, 29291670 - 29291755
Alignment:
Q  371 ttgaggacaagaaacggtttaagtttggggttgtgatgacggagcatcatatgatatttttggttatgtttttagtacttttcttt 456  Q
    ||||||| ||| |||| |||||||||| |||| |||| ||||| |||||||||||||||| || ||||||||| ||  ||||||||    
T  29291670 ttgaggataagcaacgatttaagtttgaggttatgattacggaacatcatatgatattttaggctatgttttttgttattttcttt 29291755  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 404 - 495
Target Start/End: Original strand, 32239219 - 32239310
Alignment:
Q  404 tgatgacggagcatcatatgatatttttggttatgtttttagtacttttctttgaatttaaagacaaataggatgagaattagagtagttgt 495  Q
    |||||| || ||||| |||||||||||||| ||||||||||| ||||||||||  |||| |||| | ||| ||| | |||||||| ||||||    
T  32239219 tgatgatggtgcatcgtatgatatttttggctatgtttttagcacttttctttacatttgaagatagataagataataattagaggagttgt 32239310  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 403 - 501
Target Start/End: Original strand, 6358629 - 6358727
Alignment:
Q  403 gtgatgacggagcatcatatgatatttttggttatgtttttagtacttttctttgaatttaaagacaaataggatgagaattagagtagttgttgatgg 501  Q
    |||||||| |||||  |||||| ||||| || |||||||||||||||||| |||| |||| |||||| ||| | |||||  ||||| ||||||| ||||    
T  6358629 gtgatgacagagcactatatgacattttgggctatgtttttagtacttttatttgcatttgaagacatataagttgagagatagaggagttgttaatgg 6358727  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #22
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 495 - 557
Target Start/End: Complemental strand, 12957621 - 12957559
Alignment:
Q  495 ttgatggacgaaattagcaagttcatgaaatcgtaacaagtaataaagtagtcagattatcgt 557  Q
    |||||||||||||||  ||||| ||  ||||||||||||||||||||||||| || |||||||    
T  12957621 ttgatggacgaaattgacaagtgcactaaatcgtaacaagtaataaagtagtaagcttatcgt 12957559  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #23
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 187 - 244
Target Start/End: Complemental strand, 5570565 - 5570508
Alignment:
Q  187 tttaggaggtacatacgtgtatcttggaattttatctggttgaaagtaattgtatctt 244  Q
    |||||||| || |||||||||||||| |||| ||| |||||||||||||| |||||||    
T  5570565 tttaggagatatatacgtgtatcttgaaattgtatgtggttgaaagtaatagtatctt 5570508  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #24
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 495 - 560
Target Start/End: Complemental strand, 32240511 - 32240446
Alignment:
Q  495 ttgatggacgaaattagcaagttcatgaaatcgtaacaagtaataaagtagtcagattatcgttct 560  Q
    ||||||||| ||||| |||||| ||  |||| |||||||||||||||||||| || ||||||||||    
T  32240511 ttgatggacaaaattggcaagtgcaccaaattgtaacaagtaataaagtagtaagtttatcgttct 32240446  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #25
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 404 - 495
Target Start/End: Complemental strand, 29047499 - 29047408
Alignment:
Q  404 tgatgacggagcatcatatgatatttttggttatgtttttagtac-ttttctttgaatttaaagacaaataggatgagaattagagtagttgt 495  Q
    ||||||| |||||||||||||||  ||||| ||| || ||||||| ||||||||| |||| || ||||||| ||||||| |||||| ||||||    
T  29047499 tgatgacagagcatcatatgata-atttggctatattattagtactttttctttgcatttgaaaacaaataagatgagagttagaggagttgt 29047408  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #26
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 497 - 560
Target Start/End: Complemental strand, 13305721 - 13305658
Alignment:
Q  497 gatggacgaaattagcaagttcatgaaatcgtaacaagtaataaagtagtcagattatcgttct 560  Q
    ||||||||||||| |||||| |   |||| |||||||||||||||||||| || ||||||||||    
T  13305721 gatggacgaaattggcaagtgcgcaaaattgtaacaagtaataaagtagttagtttatcgttct 13305658  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #27
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 495 - 546
Target Start/End: Original strand, 13803096 - 13803147
Alignment:
Q  495 ttgatggacgaaattagcaagttcatgaaatcgtaacaagtaataaagtagt 546  Q
    |||||||||||||||  ||||| ||| |||||||||||||||||||| ||||    
T  13803096 ttgatggacgaaattgacaagtgcatcaaatcgtaacaagtaataaaatagt 13803147  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #28
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 186 - 252
Target Start/End: Complemental strand, 28292525 - 28292459
Alignment:
Q  186 ctttaggaggtacatacgtgtatcttggaattttatctggttgaaagtaattgtatcttctctaagt 252  Q
    |||||||||||| ||||||||||||| ||||| ||  ||||||||| |||  ||||||||| |||||    
T  28292525 ctttaggaggtagatacgtgtatctttgaattataagtggttgaaattaagagtatcttctttaagt 28292459  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #29
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 402 - 456
Target Start/End: Complemental strand, 30851284 - 30851230
Alignment:
Q  402 tgtgatgacggagcatcatatgatatttttggttatgtttttagtacttttcttt 456  Q
    |||||||| ||| | ||||||||||||||||| ||||||||||||  ||||||||    
T  30851284 tgtgatgatggaacgtcatatgatatttttggctatgtttttagttattttcttt 30851230  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #30
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 365 - 410
Target Start/End: Original strand, 26829427 - 26829472
Alignment:
Q  365 tgtttcttgaggacaagaaacggtttaagtttggggttgtgatgac 410  Q
    |||| |||||||||||||||| || ||||||||||||||| |||||    
T  26829427 tgttacttgaggacaagaaacagtctaagtttggggttgtaatgac 26829472  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #31
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 522 - 567
Target Start/End: Complemental strand, 26853646 - 26853601
Alignment:
Q  522 aaatcgtaacaagtaataaagtagtcagattatcgttcttcacagg 567  Q
    ||||||||||||||||||||||||| || | |||||||| ||||||    
T  26853646 aaatcgtaacaagtaataaagtagtaagttcatcgttctccacagg 26853601  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #32
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 94 - 209
Target Start/End: Original strand, 17099875 - 17099990
Alignment:
Q  94 cttgaatgtctatttagaattgcttcaatctcatagtaaggtacaatcacatgatgactg-agtgtgacaaatgccttgaccagccccatcggctttagg 192  Q
    ||||| ||||| |||||||||| |||||  | |||| |||||||| |||  ||| ||||| |||| ||||||||   |||||||||| |  |||||||||    
T  17099875 cttgattgtctgtttagaattgtttcaaatttatagcaaggtacattcatgtgacgactggagtg-gacaaatggtgtgaccagccctactggctttagg 17099973  T
Q  193 aggtacatacgtgtatc 209  Q
    || ||||||||||||||    
T  17099974 agatacatacgtgtatc 17099990  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #33
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 370 - 410
Target Start/End: Original strand, 25180687 - 25180727
Alignment:
Q  370 cttgaggacaagaaacggtttaagtttggggttgtgatgac 410  Q
    |||||||| |||||||  |||||||||||||||||||||||    
T  25180687 cttgaggataagaaactatttaagtttggggttgtgatgac 25180727  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #34
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 370 - 410
Target Start/End: Original strand, 29765357 - 29765397
Alignment:
Q  370 cttgaggacaagaaacggtttaagtttggggttgtgatgac 410  Q
    |||||||||||| |||  |||||||||||||||||||||||    
T  29765357 cttgaggacaagcaacaatttaagtttggggttgtgatgac 29765397  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #35
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 420 - 472
Target Start/End: Original strand, 30543711 - 30543763
Alignment:
Q  420 tatgatatttttggttatgtttttagtacttttctttgaatttaaagacaaat 472  Q
    |||||||||||| | ||||||||||||| |||| |||| |||| |||||||||    
T  30543711 tatgatatttttagctatgtttttagtatttttttttgcatttgaagacaaat 30543763  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #36
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 370 - 410
Target Start/End: Complemental strand, 33878272 - 33878232
Alignment:
Q  370 cttgaggacaagaaacggtttaagtttggggttgtgatgac 410  Q
    |||||||||||| || |||| ||||||||||||||||||||    
T  33878272 cttgaggacaaggaatggttcaagtttggggttgtgatgac 33878232  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 87; Significance: 2e-41; HSPs: 33)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 87; E-Value: 2e-41
Query Start/End: Original strand, 345 - 495
Target Start/End: Original strand, 23223284 - 23223434
Alignment:
Q  345 attctaacttcttgctattgtgtttcttgaggacaagaaacggtttaagtttggggttgtgatgacggagcatcatatgatatttttggttatgttttta 444  Q
    ||||||||||||| |||||||||| ||| ||||||||||||  |||||||||||||||||||||||||||||||||||||| ||||||| |||||||| |    
T  23223284 attctaacttctttctattgtgttgcttaaggacaagaaacaatttaagtttggggttgtgatgacggagcatcatatgatgtttttggctatgttttaa 23223383  T
Q  445 gtacttttctttgaatttaaagacaaataggatgagaattagagtagttgt 495  Q
    ||||||||||||| ||||  |||||| || |||| || |||||| ||||||    
T  23223384 gtacttttctttgcattttgagacaattaagatgggagttagaggagttgt 23223434  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 82; E-Value: 2e-38
Query Start/End: Original strand, 345 - 481
Target Start/End: Complemental strand, 21452057 - 21451921
Alignment:
Q  345 attctaacttcttgctattgtgtttcttgaggacaagaaacggtttaagtttggggttgtgatgacggagcatcatatgatatttttggttatgttttta 444  Q
    ||||||||||||||||||||||||||||||||||||| ||  ||||||||||||||||||||||||  |||||||||||| | |||||| ||||||||||    
T  21452057 attctaacttcttgctattgtgtttcttgaggacaagtaatagtttaagtttggggttgtgatgacatagcatcatatgaca-ttttggctatgttttta 21451959  T
Q  445 gtac-ttttctttgaatttaaagacaaataggatgaga 481  Q
    |||| ||||||||| |||| |||||||||| |||||||    
T  21451958 gtacgttttctttgcatttgaagacaaataagatgaga 21451921  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 349 - 495
Target Start/End: Original strand, 30675360 - 30675507
Alignment:
Q  349 taacttcttgctattgtgtttcttgaggacaagaaacggtttaagtttggggttgtgatgacggagcatcatatgatatttttggttatgtttttagtac 448  Q
    |||||||||||||| || || |||||||||||| ||| ||||||||| || ||||||||||| ||||||||||||| |||||| | ||||||||||| ||    
T  30675360 taacttcttgctatagttttgcttgaggacaagcaactgtttaagttcggtgttgtgatgacagagcatcatatgacattttttgctatgtttttagaac 30675459  T
Q  449 ttttc-tttgaatttaaagacaaataggatgagaattagagtagttgt 495  Q
    ||||| |||  ||||  ||||||||| ||||| |||||||| ||||||    
T  30675460 ttttctttttcatttgtagacaaataagatgaaaattagaggagttgt 30675507  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 58; E-Value: 4e-24
Query Start/End: Original strand, 84 - 172
Target Start/End: Original strand, 23223131 - 23223220
Alignment:
Q  84 tgatatagaccttgaatgtctatttagaattgcttcaatctcatagtaaggtacaatcacatgatgact-gagtgtgacaaatgccttga 172  Q
    ||||||| ||||||||||||||||||||||||||| |||||||||| ||||||||||||||||| || | ||||||| ||||||||||||    
T  23223131 tgatatataccttgaatgtctatttagaattgctttaatctcatagcaaggtacaatcacatgacgattggagtgtggcaaatgccttga 23223220  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 345 - 444
Target Start/End: Complemental strand, 15299111 - 15299012
Alignment:
Q  345 attctaacttcttgctattgtgtttcttgaggacaagaaacggtttaagtttggggttgtgatgacggagcatcatatgatatttttggttatgttttta 444  Q
    ||||||||||||||||||| | || |||||||| ||  |||| ||||| |||| | ||||||||| ||| |||||||||||||||| |||||||||||||    
T  15299111 attctaacttcttgctatttttttgcttgaggagaatcaacgatttaaatttgcgattgtgatgatggaacatcatatgatattttaggttatgttttta 15299012  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 404 - 495
Target Start/End: Original strand, 50047113 - 50047204
Alignment:
Q  404 tgatgacggagcatcatatgatatttttggttatgtttttagtacttttctttgaatttaaagacaaataggatgagaattagagtagttgt 495  Q
    ||||||||||  | |||||||||||||||| |||||||||  |||||||||||| |||| |||||||||| ||||| || ||||| ||||||    
T  50047113 tgatgacggaataccatatgatatttttggctatgtttttgatacttttctttgcatttgaagacaaataagatgaaaagtagaggagttgt 50047204  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 404 - 481
Target Start/End: Complemental strand, 12424097 - 12424020
Alignment:
Q  404 tgatgacggagcatcatatgatatttttggttatgtttttagtac-ttttctttgaatttaaagacaaataggatgaga 481  Q
    ||||||| ||||||||||||||| |||||| |||||||||||||| ||||||||| |||| |||||||||| |||||||    
T  12424097 tgatgacagagcatcatatgata-ttttggctatgtttttagtactttttctttgcatttgaagacaaataagatgaga 12424020  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 345 - 473
Target Start/End: Original strand, 31313425 - 31313553
Alignment:
Q  345 attctaacttcttgctattgtgtttcttgaggacaagaaacggtttaagtttggggttgtgatgacggagcatcatatgatatttttggttatgttt-tt 443  Q
    ||||||| ||||||||||| |||| | |||||||||| ||| |||||||||||||||||||| || ||  |||||||||||| ||| ||  |||||| ||    
T  31313425 attctaatttcttgctattttgttgcctgaggacaagcaacagtttaagtttggggttgtgacgatgg-tcatcatatgataatttaggccatgtttctt 31313523  T
Q  444 agtacttttctttgaatttaaagacaaata 473  Q
    |||  ||||||||| |||| ||| ||||||    
T  31313524 agttattttctttgcatttgaaggcaaata 31313553  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 416 - 495
Target Start/End: Original strand, 26657420 - 26657499
Alignment:
Q  416 atcatatgatatttttggttatgtttttagtacttttctttgaatttaaagacaaataggatgagaattagagtagttgt 495  Q
    |||||||||||||||||  |||||||||| |||||||||||| |||| |||||||||| | |||||  ||||| ||||||    
T  26657420 atcatatgatatttttgactatgtttttattacttttctttgcatttgaagacaaatatgttgagagatagaggagttgt 26657499  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 496 - 567
Target Start/End: Complemental strand, 50048310 - 50048239
Alignment:
Q  496 tgatggacgaaattagcaagttcatgaaatcgtaacaagtaataaagtagtcagattatcgttcttcacagg 567  Q
    |||||||||||||| |||||| ||| ||||  ||||||||||||||||||| || |||||||||| ||||||    
T  50048310 tgatggacgaaattggcaagtgcatcaaattataacaagtaataaagtagtaagtttatcgttctccacagg 50048239  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 199 - 321
Target Start/End: Complemental strand, 21452221 - 21452099
Alignment:
Q  199 atacgtgtatcttggaattttatctggttgaaagtaattgtatcttctctaagtttgttcatcttgcatggaaatggtaatatagttacgtctgatggtg 298  Q
    ||||||||||||| ||||| ||| |||||||||||||  ||||| ||||||| |||| ||  ||||||||||  ||||||  |||| | || |||| |||    
T  21452221 atacgtgtatctttgaattgtatgtggttgaaagtaagagtatcctctctaaatttgatctgcttgcatggaggtggtaacctagtcaagtttgatagtg 21452122  T
Q  299 ggatgagtgacaatctgagcaaa 321  Q
    ||| || ||| ||||||||||||    
T  21452121 ggaggaatgaaaatctgagcaaa 21452099  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 403 - 488
Target Start/End: Complemental strand, 11770178 - 11770093
Alignment:
Q  403 gtgatgacggagcatcatatgatatttttggttatgtttttagtacttttctttgaatttaaagacaaataggatgagaattagag 488  Q
    |||||||  |||||||| ||||||||||||  |||||||||| |||| ||||||| |||| |||| ||||| ||||||| ||||||    
T  11770178 gtgatgatagagcatcacatgatatttttgtctatgtttttaatactattctttgcatttgaagataaataagatgagagttagag 11770093  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 404 - 488
Target Start/End: Complemental strand, 25730754 - 25730670
Alignment:
Q  404 tgatgacggagcatcatatgatatttttg-gttatgtttttagtacttttctttgaatttaaagacaaataggatgagaattagag 488  Q
    ||||||| ||||||||||||||||||||  | |||||||| |||||||||||||| |||| || ||||||| ||||||| ||||||    
T  25730754 tgatgacagagcatcatatgatatttttttgctatgtttt-agtacttttctttgcatttgaaaacaaataagatgagagttagag 25730670  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 405 - 486
Target Start/End: Complemental strand, 25778013 - 25777932
Alignment:
Q  405 gatgacggagcatcatatgatatttttggttatgtttttagtacttttctttgaatttaaagacaaataggatgagaattag 486  Q
    |||||||||| |||||||||||||||| | |||||| ||||| |||||||||| |||| || | ||||| ||||||| ||||    
T  25778013 gatgacggagtatcatatgatattttttgctatgttcttagtgcttttctttgcatttgaaaataaataagatgagagttag 25777932  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 404 - 495
Target Start/End: Original strand, 12810256 - 12810345
Alignment:
Q  404 tgatgacggagcatcatatgatatttttggttatgtttttagtacttttctttgaatttaaagacaaataggatgagaattagagtagttgt 495  Q
    |||||||| ||||||||  |||||||||   ||||||||||||||||||||||  ||||||||||||||| | |||||  ||||| ||||||    
T  12810256 tgatgacgaagcatcat--gatattttttactatgtttttagtacttttctttatatttaaagacaaataagttgagagatagaggagttgt 12810345  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 420 - 472
Target Start/End: Complemental strand, 34935349 - 34935297
Alignment:
Q  420 tatgatatttttggttatgtttttagtacttttctttgaatttaaagacaaat 472  Q
    ||||||||||| || ||||||||||||  ||||||||||||||||||||||||    
T  34935349 tatgatattttaggctatgtttttagttattttctttgaatttaaagacaaat 34935297  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 427 - 469
Target Start/End: Complemental strand, 25266504 - 25266462
Alignment:
Q  427 tttttggttatgtttttagtacttttctttgaatttaaagaca 469  Q
    ||||||||||||||||||||||||||||||| |||| ||||||    
T  25266504 tttttggttatgtttttagtacttttctttgcatttgaagaca 25266462  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 243 - 325
Target Start/End: Original strand, 30675235 - 30675317
Alignment:
Q  243 ttctctaagtttgttcatcttgcatggaaatggtaatatagttacgtctgatggtgggatgagtgacaatctgagcaaaatct 325  Q
    |||| |||||||||||   |||||| ||| ||||||  |||||| || ||||||||||| || ||||||||||||||||||||    
T  30675235 ttctataagtttgttccaattgcatagaagtggtaagttagttaagtttgatggtgggaagaatgacaatctgagcaaaatct 30675317  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 495 - 565
Target Start/End: Complemental strand, 34522185 - 34522115
Alignment:
Q  495 ttgatggacgaaattagcaagttcatgaaatcgtaacaagtaataaagtagtcagattatcgttcttcaca 565  Q
    |||||||| |||||| |||||| ||  |||||||||||||||||||| |||| || |||||||||| ||||    
T  34522185 ttgatggaagaaattggcaagtgcaccaaatcgtaacaagtaataaaatagtaagtttatcgttctccaca 34522115  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 404 - 488
Target Start/End: Complemental strand, 8247840 - 8247756
Alignment:
Q  404 tgatgacggagcatcatatgatatttttggttatgtttttagta-cttttctttgaatttaaagacaaataggatgagaattagag 488  Q
    ||||||| ||||||||||||| | |||||  |||||||||| || |||||||||| |||| |||||||||| ||||||| ||||||    
T  8247840 tgatgacagagcatcatatgaca-ttttgactatgtttttaataccttttctttgcatttgaagacaaataagatgagagttagag 8247756  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 365 - 410
Target Start/End: Original strand, 22624837 - 22624882
Alignment:
Q  365 tgtttcttgaggacaagaaacggtttaagtttggggttgtgatgac 410  Q
    |||| |||||||||||| ||| ||||||||||||||||||||||||    
T  22624837 tgttacttgaggacaagcaaccgtttaagtttggggttgtgatgac 22624882  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 416 - 473
Target Start/End: Complemental strand, 25965545 - 25965488
Alignment:
Q  416 atcatatgatatttttggttatgtttttagtacttttctttgaatttaaagacaaata 473  Q
    |||||||||| |||| |||||||||||||||  ||||||||| | |||||||||||||    
T  25965545 atcatatgatgttttaggttatgtttttagttattttctttgtacttaaagacaaata 25965488  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 93 - 169
Target Start/End: Original strand, 31313020 - 31313097
Alignment:
Q  93 ccttgaatgtctatttagaattgcttcaatctcatagtaaggtacaatcacatgatgact-gagtgtgacaaatgcct 169  Q
    |||||| |||||||||||||||| || |||||||||| |||||||||| |||| | || | ||||||| |||||||||    
T  31313020 ccttgattgtctatttagaattggtttaatctcatagcaaggtacaataacatcacgattggagtgtggcaaatgcct 31313097  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 370 - 410
Target Start/End: Complemental strand, 21914895 - 21914855
Alignment:
Q  370 cttgaggacaagaaacggtttaagtttggggttgtgatgac 410  Q
    |||||||||||| ||||||| ||||||||||||||||||||    
T  21914895 cttgaggacaagtaacggttcaagtttggggttgtgatgac 21914855  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #25
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 402 - 462
Target Start/End: Original strand, 26101987 - 26102047
Alignment:
Q  402 tgtgatgacggagcatcatatgatatttttggttatgtttttagtacttttctttgaattt 462  Q
    |||||||| |||||||||||||||||||| ||  |||||||||||  ||||||||| ||||    
T  26101987 tgtgatgatggagcatcatatgatattttaggcgatgtttttagttattttctttgcattt 26102047  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #26
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 94 - 145
Target Start/End: Original strand, 27754786 - 27754837
Alignment:
Q  94 cttgaatgtctatttagaattgcttcaatctcatagtaaggtacaatcacat 145  Q
    ||||||| ||| |||||||||| |||||| ||||||||| ||||||||||||    
T  27754786 cttgaatttctgtttagaattgtttcaatatcatagtaacgtacaatcacat 27754837  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #27
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 121 - 190
Target Start/End: Original strand, 14397286 - 14397356
Alignment:
Q  121 atctcatagtaaggtacaatcacatgatgactg-agtgtgacaaatgccttgaccagccccatcggcttta 190  Q
    ||||||||| ||||||||||||||||| ||| | |||||| ||||| |||||||||| | ||| |||||||    
T  14397286 atctcatagcaaggtacaatcacatgacgacggtagtgtggcaaataccttgaccagtctcattggcttta 14397356  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #28
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 498 - 560
Target Start/End: Original strand, 17836791 - 17836853
Alignment:
Q  498 atggacgaaattagcaagttcatgaaatcgtaacaagtaataaagtagtcagattatcgttct 560  Q
    |||||||||||| |||||| ||  ||||| |||||||||| |||||||| || ||||||||||    
T  17836791 atggacgaaattggcaagtgcaccaaatcataacaagtaagaaagtagtaagtttatcgttct 17836853  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #29
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 487 - 565
Target Start/End: Complemental strand, 23224697 - 23224619
Alignment:
Q  487 agtagttgttgatggacgaaattagcaagttcatgaaatcgtaacaagtaataaagtagtcagattatcgttcttcaca 565  Q
    |||| ||| |||||| ||||||| |||||| | | ||||||||||||||||||| ||||| || ||||| |||| ||||    
T  23224697 agtaattggtgatgggcgaaattggcaagtgcgtcaaatcgtaacaagtaataaggtagtaagtttatcattctccaca 23224619  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #30
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 498 - 560
Target Start/End: Complemental strand, 30676729 - 30676667
Alignment:
Q  498 atggacgaaattagcaagttcatgaaatcgtaacaagtaataaagtagtcagattatcgttct 560  Q
    ||||||||| ||  ||||||||  ||||||||||||||||||||||||| |  ||||||||||    
T  30676729 atggacgaacttgacaagttcaccaaatcgtaacaagtaataaagtagtaaatttatcgttct 30676667  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #31
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 91 - 145
Target Start/End: Complemental strand, 31313161 - 31313107
Alignment:
Q  91 gaccttgaatgtctatttagaattgcttcaatctcatagtaaggtacaatcacat 145  Q
    |||||||| ||||||||||||||||||| |||||||||   ||||||||| ||||    
T  31313161 gaccttgattgtctatttagaattgctttaatctcataaccaggtacaataacat 31313107  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #32
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 370 - 410
Target Start/End: Complemental strand, 21912112 - 21912072
Alignment:
Q  370 cttgaggacaagaaacggtttaagtttggggttgtgatgac 410  Q
    |||||||||||  ||||||| ||||||||||||||||||||    
T  21912112 cttgaggacaaataacggttcaagtttggggttgtgatgac 21912072  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #33
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 496 - 560
Target Start/End: Complemental strand, 27682993 - 27682929
Alignment:
Q  496 tgatggacgaaattagcaagttcatgaaatcgtaacaagtaataaagtagtcagattatcgttct 560  Q
    ||||||||||||||  ||||| ||  ||| ||||||||||||||||||||| || |||| |||||    
T  27682993 tgatggacgaaattgacaagtgcaccaaaccgtaacaagtaataaagtagtaagtttattgttct 27682929  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 80; Significance: 3e-37; HSPs: 25)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 80; E-Value: 3e-37
Query Start/End: Original strand, 345 - 488
Target Start/End: Complemental strand, 28278664 - 28278522
Alignment:
Q  345 attctaacttcttgctattgtgtttcttgaggacaagaaacggtttaagtttggggttgtgatgacggagcatcatatgatatttttggttatgttttta 444  Q
    |||||||||||||||||||||||| |||||||||||| |||  ||||||||| ||||||||||||| |||||||||||||||||||| | |||| |||||    
T  28278664 attctaacttcttgctattgtgttgcttgaggacaagcaacactttaagttttgggttgtgatgacagagcatcatatgatattttttgctatg-tttta 28278566  T
Q  445 gtacttttctttgaatttaaagacaaataggatgagaattagag 488  Q
    ||||||||||||| |||| ||| |||||| || |||| ||||||    
T  28278565 gtacttttctttgcatttgaaggcaaataagaagagagttagag 28278522  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 69; E-Value: 1e-30
Query Start/End: Original strand, 403 - 495
Target Start/End: Complemental strand, 21505323 - 21505231
Alignment:
Q  403 gtgatgacggagcatcatatgatatttttggttatgtttttagtacttttctttgaatttaaagacaaataggatgagaattagagtagttgt 495  Q
    ||||||||||||||||||||||||||||||| ||||||||||||| ||||||||| |||| |||||||||| ||||||| |||||||||||||    
T  21505323 gtgatgacggagcatcatatgatatttttggctatgtttttagtatttttctttgcatttgaagacaaataagatgagagttagagtagttgt 21505231  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 61; E-Value: 6e-26
Query Start/End: Original strand, 349 - 473
Target Start/End: Original strand, 39730324 - 39730448
Alignment:
Q  349 taacttcttgctattgtgtttcttgaggacaagaaacggtttaagtttggggttgtgatgacggagcatcatatgatatttttggttatgtttttagtac 448  Q
    ||||||||||||||| |||| |||||||||||  |||  ||||||||||||||||||||| ||||||||||||| ||||||| || ||||||||||||      
T  39730324 taacttcttgctattttgttgcttgaggacaaataacattttaagtttggggttgtgatggcggagcatcatataatattttaggctatgtttttagtta 39730423  T
Q  449 ttttctttgaatttaaagacaaata 473  Q
    ||||||||  | || ||||||||||    
T  39730424 ttttctttataattgaagacaaata 39730448  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 58; E-Value: 4e-24
Query Start/End: Original strand, 345 - 470
Target Start/End: Original strand, 31449830 - 31449955
Alignment:
Q  345 attctaacttcttgctattgtgtttcttgaggacaagaaacggtttaagtttggggttgtgatgacggagcatcatatgatatttttggttatgttttta 444  Q
    ||||| ||||||||||| | |||| |||||||||||| ||| ||||||||||||||||||||||| |||| ||| |||||||||||  | ||||||||||    
T  31449830 attctgacttcttgctaatttgttacttgaggacaagcaacagtttaagtttggggttgtgatgatggagtatcttatgatattttaagctatgttttta 31449929  T
Q  445 gtacttttctttgaatttaaagacaa 470  Q
    ||  |||| |||| |||| |||||||    
T  31449930 gttattttatttgcatttgaagacaa 31449955  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 348 - 462
Target Start/End: Complemental strand, 32276752 - 32276638
Alignment:
Q  348 ctaacttcttgctattgtgtttcttgaggacaagaaacggtttaagtttggggttgtgatgacggagcatcatatgatatttttggttatgtttttagta 447  Q
    |||| |||||| |||| |||| | | |||||||||||| ||||||||||||||||||||||| ||| ||||||||| || |||||| ||||||||||||     
T  32276752 ctaagttcttgttattttgttgcgtaaggacaagaaaccgtttaagtttggggttgtgatgaaggaacatcatatggtacttttggatatgtttttagtt 32276653  T
Q  448 cttttctttgaattt 462  Q
     ||||||||| ||||    
T  32276652 attttctttgcattt 32276638  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 111 - 217
Target Start/End: Original strand, 39730111 - 39730217
Alignment:
Q  111 aattgcttcaatctcatagtaaggtacaatcacatgatgac-tgagtgtgacaaatgccttgaccagccccatcggctttaggaggtacatacgtgtatc 209  Q
    |||||| ||||||||||||||| ||||||||||| |||||| |||||||| ||||| |||||||||| | ||  ||||||||||||||||||| ||||||    
T  39730111 aattgcatcaatctcatagtaatgtacaatcacacgatgacttgagtgtggcaaataccttgaccag-ctcactggctttaggaggtacatacatgtatc 39730209  T
Q  210 ttggaatt 217  Q
    ||| ||||    
T  39730210 ttgaaatt 39730217  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 92 - 217
Target Start/End: Complemental strand, 22389265 - 22389140
Alignment:
Q  92 accttgaatgtctatttagaattgcttcaatctcatagtaaggtacaatcacatgatgactgagtgtgacaaatgccttgaccagccccatcggctttag 191  Q
    ||||||||||| | |||| |||| ||||||| |||||| |||||||| |||||||| ||||| ||||| ||||| |||||||||||| ||    ||||||    
T  22389265 accttgaatgtttgtttataattacttcaatttcatagcaaggtacagtcacatgacgactgggtgtggcaaataccttgaccagcctcactacctttag 22389166  T
Q  192 gaggtacatacgtgtatcttggaatt 217  Q
    ||||||||  | |||| |||||||||    
T  22389165 gaggtacaatcctgtagcttggaatt 22389140  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 416 - 473
Target Start/End: Original strand, 32619586 - 32619643
Alignment:
Q  416 atcatatgatatttttggttatgtttttagtacttttctttgaatttaaagacaaata 473  Q
    |||||||||||||||||| ||| ||||||||||||||||||| |||| ||||||||||    
T  32619586 atcatatgatatttttggctatatttttagtacttttctttgcatttgaagacaaata 32619643  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 186 - 278
Target Start/End: Complemental strand, 17415588 - 17415496
Alignment:
Q  186 ctttaggaggtacatacgtgtatcttggaattttatctggttgaaagtaattgtatcttctctaagtttgttcatcttgcatggaaatggtaa 278  Q
    ||||||||||||||||||||||||||||||||     | |||||||||||  ||||||| |||||||||||||  ||||| ||||| ||||||    
T  17415588 ctttaggaggtacatacgtgtatcttggaattgggaatagttgaaagtaagagtatcttttctaagtttgttccacttgcgtggaagtggtaa 17415496  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 201 - 321
Target Start/End: Complemental strand, 28278823 - 28278704
Alignment:
Q  201 acgtgtatcttggaattttatctggttgaaagtaattgtatcttctctaagtttgttcatcttgcatggaaatggtaatatagttacgtctgatggtggg 300  Q
    ||||||||||||||||| ||| ||||| |||||||  ||||||||||||| ||||||   ||||||||||| ||||||  |||| |  |||||| |||||    
T  28278823 acgtgtatcttggaattctatgtggttaaaagtaagagtatcttctctaactttgtttcgcttgcatggaagtggtaaactagtcaaatctgatagtggg 28278724  T
Q  301 atgagtgacaatctgagcaaa 321  Q
    | || ||||||| ||||||||    
T  28278723 a-gaatgacaatatgagcaaa 28278704  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 495 - 567
Target Start/End: Complemental strand, 31000669 - 31000597
Alignment:
Q  495 ttgatggacgaaattagcaagttcatgaaatcgtaacaagtaataaagtagtcagattatcgttcttcacagg 567  Q
    ||||||||||||||| |||||| ||| |||| |||||||||||||||||||| || ||||| |||| ||||||    
T  31000669 ttgatggacgaaatttgcaagtgcatcaaattgtaacaagtaataaagtagtaagtttatcattctccacagg 31000597  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 404 - 495
Target Start/End: Original strand, 35707735 - 35707826
Alignment:
Q  404 tgatgacggagcatcatatgatatttttggttatgtttttagtac-ttttctttgaatttaaagacaaataggatgagaattagagtagttgt 495  Q
    ||||||| ||||||||||||| | |||||  |||||||||||||| ||||||||| |||| |||||||||| ||||||| |||||| ||||||    
T  35707735 tgatgacagagcatcatatgaca-ttttgactatgtttttagtactttttctttgtatttgaagacaaataagatgagagttagagaagttgt 35707826  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 404 - 495
Target Start/End: Original strand, 25473969 - 25474060
Alignment:
Q  404 tgatgacggagcatcatatgatatttttggttatgtttttagtac-ttttctttgaatttaaagacaaataggatgagaattagagtagttgt 495  Q
    ||||||| ||||||||||||| | |||||| |||||||||||||| |||| |||  |||| |||||||||| ||||||| |||||| ||||||    
T  25473969 tgatgacagagcatcatatgaca-ttttggctatgtttttagtacattttattttcatttgaagacaaataagatgagagttagaggagttgt 25474060  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 404 - 471
Target Start/End: Complemental strand, 18236485 - 18236418
Alignment:
Q  404 tgatgacggagcatcatatgatatttttggttatgtttttagtacttttctttgaatttaaagacaaa 471  Q
    |||||||||||||||||||||||||||  | ||||||||||||  ||||||||| |||| ||| ||||    
T  18236485 tgatgacggagcatcatatgatattttatgctatgtttttagttattttctttgcatttgaaggcaaa 18236418  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 413 - 495
Target Start/End: Original strand, 1733042 - 1733123
Alignment:
Q  413 agcatcatatgatatttttggttatgtttttagtacttttctttgaatttaaagacaaataggatgagaattagagtagttgt 495  Q
    |||||||||||| ||||| | ||||||||||||||||||| |||  |||| |||||||||  ||||||| |||||| ||||||    
T  1733042 agcatcatatgacattttag-ttatgtttttagtactttttttttcatttgaagacaaatgagatgagagttagaggagttgt 1733123  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 393 - 443
Target Start/End: Original strand, 29769610 - 29769660
Alignment:
Q  393 gtttggggttgtgatgacggagcatcatatgatatttttggttatgttttt 443  Q
    |||||||||| ||||||||||||||||||| ||||||| || |||||||||    
T  29769610 gtttggggttatgatgacggagcatcatataatattttaggctatgttttt 29769660  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 345 - 442
Target Start/End: Complemental strand, 27918224 - 27918127
Alignment:
Q  345 attctaacttcttgctattgtgtttcttgaggacaagaaacggtttaagtttggggttgtgatgacggagcatcatatgatatttttggttatgtttt 442  Q
    ||||||||||||| ||| ||| ||  |||| |||||| |||  ||||||||||||| |||||||| |||  | |||||||||||||| | ||||||||    
T  27918224 attctaacttcttactaatgttttgtttgatgacaagcaacaatttaagtttggggatgtgatgatggaataacatatgatatttttagctatgtttt 27918127  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 345 - 409
Target Start/End: Complemental strand, 22388997 - 22388934
Alignment:
Q  345 attctaacttcttgctattgtgtttcttgaggacaagaaacggtttaagtttggggttgtgatga 409  Q
    ||||||||||||||||||| | |||||||| |||||| |||| | ||||||||||||||| ||||    
T  22388997 attctaacttcttgctatttt-tttcttgatgacaagcaacgatataagtttggggttgtaatga 22388934  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 370 - 410
Target Start/End: Complemental strand, 1504352 - 1504312
Alignment:
Q  370 cttgaggacaagaaacggtttaagtttggggttgtgatgac 410  Q
    |||||||||||| || |||| ||||||||||||||||||||    
T  1504352 cttgaggacaaggaatggttcaagtttggggttgtgatgac 1504312  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 370 - 410
Target Start/End: Complemental strand, 20379417 - 20379377
Alignment:
Q  370 cttgaggacaagaaacggtttaagtttggggttgtgatgac 410  Q
    |||||||||||| ||| || |||||||||||||||||||||    
T  20379417 cttgaggacaagcaacagtctaagtttggggttgtgatgac 20379377  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 370 - 410
Target Start/End: Original strand, 25873169 - 25873209
Alignment:
Q  370 cttgaggacaagaaacggtttaagtttggggttgtgatgac 410  Q
    |||||||||||| || |||| ||||||||||||||||||||    
T  25873169 cttgaggacaaggaatggttcaagtttggggttgtgatgac 25873209  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 370 - 410
Target Start/End: Original strand, 25886157 - 25886197
Alignment:
Q  370 cttgaggacaagaaacggtttaagtttggggttgtgatgac 410  Q
    |||||||||||| |||  |||||||||||||||||||||||    
T  25886157 cttgaggacaagcaacaatttaagtttggggttgtgatgac 25886197  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #23
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 497 - 565
Target Start/End: Original strand, 28455128 - 28455196
Alignment:
Q  497 gatggacgaaattagcaagttcatgaaatcgtaacaagtaataaagtagtcagattatcgttcttcaca 565  Q
    ||||||||||||| |||||| ||  ||||| ||||||||| ||||||||| || |||| ||||| ||||    
T  28455128 gatggacgaaattggcaagtacaccaaatcataacaagtattaaagtagtaagtttatggttctccaca 28455196  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #24
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 421 - 473
Target Start/End: Complemental strand, 31914099 - 31914047
Alignment:
Q  421 atgatatttttggttatgtttttagtacttttctttgaatttaaagacaaata 473  Q
    |||| |||||| | ||||||||||||| ||||||||| |||| ||||||||||    
T  31914099 atgacattttttgctatgtttttagtatttttctttgcatttgaagacaaata 31914047  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #25
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 370 - 410
Target Start/End: Original strand, 45456266 - 45456306
Alignment:
Q  370 cttgaggacaagaaacggtttaagtttggggttgtgatgac 410  Q
    |||||||||||| || |||| ||||||||||||||||||||    
T  45456266 cttgaggacaaggaatggttcaagtttggggttgtgatgac 45456306  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 79; Significance: 1e-36; HSPs: 24)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 79; E-Value: 1e-36
Query Start/End: Original strand, 345 - 479
Target Start/End: Complemental strand, 1676537 - 1676403
Alignment:
Q  345 attctaacttcttgctattgtgtttcttgaggacaagaaacggtttaagtttggggttgtgatgacggagcatcatatgatatttttggttatgttttta 444  Q
    ||||||||||||||||| |||||| ||||| |||| | ||| ||||||||||||||||||||||||| |||||||||||| |||||||||||| |||||     
T  1676537 attctaacttcttgctactgtgttgcttgaagacatgcaacagtttaagtttggggttgtgatgacgaagcatcatatgacatttttggttatatttttt 1676438  T
Q  445 gtacttttctttgaatttaaagacaaataggatga 479  Q
    ||||||||||||  |||| |||||||||| |||||    
T  1676437 gtacttttctttacatttgaagacaaataagatga 1676403  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 79; E-Value: 1e-36
Query Start/End: Original strand, 345 - 479
Target Start/End: Complemental strand, 1683065 - 1682931
Alignment:
Q  345 attctaacttcttgctattgtgtttcttgaggacaagaaacggtttaagtttggggttgtgatgacggagcatcatatgatatttttggttatgttttta 444  Q
    ||||||||||||||||| |||||| ||||| |||| | ||| ||||||||||||||||||||||||| |||||||||||| |||||||||||| |||||     
T  1683065 attctaacttcttgctactgtgttgcttgaagacatgcaacagtttaagtttggggttgtgatgacgaagcatcatatgacatttttggttatatttttt 1682966  T
Q  445 gtacttttctttgaatttaaagacaaataggatga 479  Q
    ||||||||||||  |||| |||||||||| |||||    
T  1682965 gtacttttctttacatttgaagacaaataagatga 1682931  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 73; E-Value: 4e-33
Query Start/End: Original strand, 153 - 277
Target Start/End: Complemental strand, 1697017 - 1696893
Alignment:
Q  153 gagtgtgacaaatgccttgaccagccccatcggctttaggaggtacatacgtgtatcttggaattttatctggttgaaagtaattgtatcttctctaagt 252  Q
    ||||||| |||||||||||||||||||||  |||||||| ||||||||| ||||||||||||||| ||| |||||||||||||  ||||| |||||||||    
T  1697017 gagtgtggcaaatgccttgaccagccccactggctttagaaggtacatatgtgtatcttggaattgtatgtggttgaaagtaaaagtatcctctctaagt 1696918  T
Q  253 ttgttcatcttgcatggaaatggta 277  Q
    ||||||  ||||||||||| |||||    
T  1696917 ttgttctgcttgcatggaagtggta 1696893  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 345 - 481
Target Start/End: Complemental strand, 1696809 - 1696675
Alignment:
Q  345 attctaacttcttgctattgtgtttcttgaggacaagaaacggtttaagtttggggttgtgatgacggagcatcatatgatatttttggttatgttttta 444  Q
    ||||||||||||||||| |||||| ||||| || ||| ||| ||||||||||| |||||||||||   |||||||||||| |||||||| ||  | ||||    
T  1696809 attctaacttcttgctactgtgttgcttgaagataagcaacagtttaagtttgaggttgtgatgataaagcatcatatgacatttttggcta--tattta 1696712  T
Q  445 gtacttttctttgaatttaaagacaaataggatgaga 481  Q
    |||||||| |||  |||| |||||||||| |||||||    
T  1696711 gtacttttatttacatttgaagacaaataagatgaga 1696675  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 406 - 481
Target Start/End: Original strand, 15192137 - 15192212
Alignment:
Q  406 atgacggagcatcatatgatatttttggttatgtttttagtacttttctttgaatttaaagacaaataggatgaga 481  Q
    ||||| ||||||||||||| |||||| ||||||||||| ||||||||||||| |||| |||||||||| |||||||    
T  15192137 atgacagagcatcatatgacattttttgttatgtttttcgtacttttctttgcatttgaagacaaataagatgaga 15192212  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 345 - 432
Target Start/End: Original strand, 34850752 - 34850839
Alignment:
Q  345 attctaacttcttgctattgtgtttcttgaggacaagaaacggtttaagtttggggttgtgatgacggagcatcatatgatatttttg 432  Q
    |||||||||||||| |||||||||||||| | ||||| ||| |||||| ||||| |||| |||||| || |||||||| |||||||||    
T  34850752 attctaacttcttgttattgtgtttcttgcgaacaagcaacagtttaaatttggagttgcgatgacagaacatcatataatatttttg 34850839  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 420 - 495
Target Start/End: Complemental strand, 34864458 - 34864383
Alignment:
Q  420 tatgatatttttggttatgtttttagtacttttctttgaatttaaagacaaataggatgagaattagagtagttgt 495  Q
    |||||||||||| ||||||||||||||||||||||||| |||| |||||||||| ||| | | |||||| ||||||    
T  34864458 tatgatattttttgttatgtttttagtacttttctttgtatttgaagacaaataagataaaagttagaggagttgt 34864383  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 407 - 471
Target Start/End: Complemental strand, 12111510 - 12111446
Alignment:
Q  407 tgacggagcatcatatgatatttttggttatgtttttagtacttttctttgaatttaaagacaaa 471  Q
    |||| ||||||||||||| |||||| |||||||||||||||||||| |||| |||| ||||||||    
T  12111510 tgacagagcatcatatgacattttttgttatgtttttagtacttttatttgcatttgaagacaaa 12111446  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 402 - 473
Target Start/End: Original strand, 18897921 - 18897992
Alignment:
Q  402 tgtgatgacggagcatcatatgatatttttggttatgtttttagtacttttctttgaatttaaagacaaata 473  Q
    ||||||| |||| |||||||||| |||||||| | |||||||| |||||||||||| |||| ||||||||||    
T  18897921 tgtgatggcggatcatcatatgacatttttggctgtgtttttactacttttctttgcatttgaagacaaata 18897992  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 403 - 488
Target Start/End: Complemental strand, 5906905 - 5906819
Alignment:
Q  403 gtgatgacggagcatcatatgatat-ttttggttatgtttttagtacttttctttgaatttaaagacaaataggatgagaattagag 488  Q
    ||||||||| | ||||||||||||| |||| | |||||||||||||||||| |||| |||| |||||||| | ||||||| ||||||    
T  5906905 gtgatgacgaaacatcatatgatatatttttgctatgtttttagtacttttatttgcatttgaagacaaacaagatgagagttagag 5906819  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 390 - 456
Target Start/End: Original strand, 10576371 - 10576437
Alignment:
Q  390 taagtttggggttgtgatgacggagcatcatatgatatttttggttatgtttttagtacttttcttt 456  Q
    |||||||||||||||||||| |||| ||||||||||||||| |  ||||||||||||  ||||||||    
T  10576371 taagtttggggttgtgatgatggagtatcatatgatattttagactatgtttttagttattttcttt 10576437  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 81 - 147
Target Start/End: Complemental strand, 15787927 - 15787861
Alignment:
Q  81 tggtgatatagaccttgaatgtctatttagaattgcttcaatctcatagtaaggtacaatcacatga 147  Q
    |||| |||||||| || |||||||||||| ||||| ||||||||||||| |||||||||||| ||||    
T  15787927 tggtaatatagactttaaatgtctatttaaaattgattcaatctcatagcaaggtacaatcaaatga 15787861  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 496 - 566
Target Start/End: Original strand, 47023552 - 47023622
Alignment:
Q  496 tgatggacgaaattagcaagttcatgaaatcgtaacaagtaataaagtagtcagattatcgttcttcacag 566  Q
    ||||| |||||||| |||||| ||| ||||||||||||||||||| ||||| || ||||| ||||||||||    
T  47023552 tgatgaacgaaattggcaagtacatcaaatcgtaacaagtaataaggtagtaagtttatctttcttcacag 47023622  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 495 - 558
Target Start/End: Complemental strand, 20718004 - 20717941
Alignment:
Q  495 ttgatggacgaaattagcaagttcatgaaatcgtaacaagtaataaagtagtcagattatcgtt 558  Q
    ||||| ||||||||| |||||| ||  ||||||||||||||||||||||||| || ||||||||    
T  20718004 ttgatagacgaaattggcaagtgcaccaaatcgtaacaagtaataaagtagtaagtttatcgtt 20717941  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 404 - 466
Target Start/End: Original strand, 9288142 - 9288204
Alignment:
Q  404 tgatgacggagcatcatatgatatttttggttatgtttttagtacttttctttgaatttaaag 466  Q
    |||||| |||||| ||||||||||||| || ||||||||||||| ||||||||| || |||||    
T  9288142 tgatgaaggagcaccatatgatattttaggatatgtttttagtagttttctttgcatataaag 9288204  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 495 - 559
Target Start/End: Original strand, 12840697 - 12840761
Alignment:
Q  495 ttgatggacgaaattagcaagttcatgaaatcgtaacaagtaataaagtagtcagattatcgttc 559  Q
    ||||||||||||||| |||||| ||   |||||||||||||| ||||||||| || |||||||||    
T  12840697 ttgatggacgaaattggcaagtgcactgaatcgtaacaagtattaaagtagtaagtttatcgttc 12840761  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 496 - 560
Target Start/End: Complemental strand, 22220009 - 22219945
Alignment:
Q  496 tgatggacgaaattagcaagttcatgaaatcgtaacaagtaataaagtagtcagattatcgttct 560  Q
    ||||||||||||||  ||||| ||  ||||| ||||||||||||||||||| || ||||||||||    
T  22220009 tgatggacgaaattgacaagtgcactaaatcataacaagtaataaagtagtaagtttatcgttct 22219945  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 404 - 495
Target Start/End: Complemental strand, 25315414 - 25315323
Alignment:
Q  404 tgatgacggagcatcatatgatatttttggttatgttttt-agtacttttctttgaatttaaagacaaataggatgagaattagagtagttgt 495  Q
    ||||||| ||||||||||||| ||||| | |||||||||| |||||||||||||  |||| |||| ||||| |||||||  ||||| ||||||    
T  25315414 tgatgaccgagcatcatatgacattttag-ttatgttttttagtacttttctttacatttgaagataaataagatgagagatagaggagttgt 25315323  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 522 - 565
Target Start/End: Complemental strand, 24580047 - 24580004
Alignment:
Q  522 aaatcgtaacaagtaataaagtagtcagattatcgttcttcaca 565  Q
    ||||||||||||||||||||||||| || |||||||||| ||||    
T  24580047 aaatcgtaacaagtaataaagtagttagtttatcgttctccaca 24580004  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 425 - 488
Target Start/End: Complemental strand, 25050227 - 25050164
Alignment:
Q  425 tatttttggttatgtttttagtacttttctttgaatttaaagacaaataggatgagaattagag 488  Q
    ||||||||| ||||||||||||| |||| |||| |||| |||||||||| ||||| | ||||||    
T  25050227 tatttttggctatgtttttagtatttttatttgtatttgaagacaaataagatgaaagttagag 25050164  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 506 - 557
Target Start/End: Complemental strand, 30797754 - 30797703
Alignment:
Q  506 aattagcaagttcatgaaatcgtaacaagtaataaagtagtcagattatcgt 557  Q
    |||| |||||| ||| ||||||||||||||||||||||||| || |||||||    
T  30797754 aattggcaagtgcatcaaatcgtaacaagtaataaagtagtaagtttatcgt 30797703  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 412 - 456
Target Start/End: Complemental strand, 10320394 - 10320350
Alignment:
Q  412 gagcatcatatgatatttttggttatgtttttagtacttttcttt 456  Q
    ||||||||||||| |||||| | ||||||||||||| ||||||||    
T  10320394 gagcatcatatgacatttttcgctatgtttttagtaattttcttt 10320350  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 405 - 473
Target Start/End: Complemental strand, 17339995 - 17339927
Alignment:
Q  405 gatgacggagcatcatatgatatttttggttatgtttttagtacttttctttgaatttaaagacaaata 473  Q
    ||||| |||||||||||||||||||| || |||||||||| |  |||| |||  |||||||| ||||||    
T  17339995 gatgatggagcatcatatgatattttaggctatgtttttaattattttatttacatttaaaggcaaata 17339927  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 370 - 410
Target Start/End: Original strand, 19826667 - 19826707
Alignment:
Q  370 cttgaggacaagaaacggtttaagtttggggttgtgatgac 410  Q
    |||||||||||| || |||| ||||||||||||||||||||    
T  19826667 cttgaggacaaggaatggttcaagtttggggttgtgatgac 19826707  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 78; Significance: 5e-36; HSPs: 25)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 78; E-Value: 5e-36
Query Start/End: Original strand, 22 - 321
Target Start/End: Original strand, 11520668 - 11520971
Alignment:
Q  22 aaatataccccaccttaacctcaaccacgtgataaccttgaaaatgcct---tcggtgtgtatggtgatatagaccttgaatgtctatttagaattgctt 118  Q
    ||||||| |||||||| |||||| |||||| |||||||||||||  |||   |   ||||| |  ||||||| |||||||||||||  ||| ||||||||    
T  11520668 aaatatatcccacctttacctcatccacgttataaccttgaaaagtcctctatgtctgtgtgttatgatatataccttgaatgtctgcttataattgctt 11520767  T
Q  119 caatctcatagtaaggtacaatcacatgatgact-gagtgtgacaaatgccttgaccagccccatcggctttaggaggtacatacgtgtatcttggaatt 217  Q
    ||||||||||| |||||||||||| |||| |||| ||||||| |||||||||||||||| ||||   | ||||| || |||||||||||||||| |||||    
T  11520768 caatctcatagcaaggtacaatcatatgacgactagagtgtggcaaatgccttgaccagtcccactagatttagaagatacatacgtgtatctttgaatt 11520867  T
Q  218 ttatctggttgaaagtaattgtatcttctctaagtttgttcatcttgcatggaaatggtaatatagttacgtctgatggtgggatgagtgacaatctgag 317  Q
     | | |||||||||||||  |||||  |||||||||||  |   ||| |||||  ||||||  |||| | || |||| |||||| || ||||||||||||    
T  11520868 gtttgtggttgaaagtaagagtatccactctaagtttgaactggttgtatggatgtggtaagctagtcaagtttgatagtgggaggaatgacaatctgag 11520967  T
Q  318 caaa 321  Q
    ||||    
T  11520968 caaa 11520971  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 78; E-Value: 5e-36
Query Start/End: Original strand, 346 - 494
Target Start/End: Original strand, 21017750 - 21017899
Alignment:
Q  346 ttctaacttcttgctattgtgtttcttgaggacaagaaacggtttaagtttggggttgtgatgacggagcatcatatgata-tttttggttatgttttta 444  Q
    ||||||||||||| ||||||||| ||| |||||||| |||| |||||||||| ||||||||| || ||||||||||||||| ||||| ||||||||||||    
T  21017750 ttctaacttcttgttattgtgttgcttaaggacaagcaacgatttaagtttgaggttgtgataacagagcatcatatgatatttttttgttatgttttta 21017849  T
Q  445 gtacttttctttgaatttaaagacaaataggatgagaattagagtagttg 494  Q
    ||| ||||||||| |||| |||| ||||| ||||||| |||||| |||||    
T  21017850 gtatttttctttgcatttgaagaaaaataagatgagagttagaggagttg 21017899  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 74; E-Value: 1e-33
Query Start/End: Original strand, 345 - 470
Target Start/End: Original strand, 13911138 - 13911263
Alignment:
Q  345 attctaacttcttgctattgtgtttcttgaggacaagaaacggtttaagtttggggttgtgatgacggagcatcatatgatatttttggttatgttttta 444  Q
    |||||||||| ||||||||||||| ||| |||||||| |||||||||||||| ||||||||||||||||| |||| |||||||||||   ||||||||||    
T  13911138 attctaacttattgctattgtgttactttaggacaagcaacggtttaagtttagggttgtgatgacggagaatcaaatgatatttttttctatgttttta 13911237  T
Q  445 gtacttttctttgaatttaaagacaa 470  Q
    ||| ||||||||| |||| |||||||    
T  13911238 gtaattttctttgtatttgaagacaa 13911263  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 60; E-Value: 3e-25
Query Start/End: Original strand, 404 - 487
Target Start/End: Complemental strand, 25919647 - 25919564
Alignment:
Q  404 tgatgacggagcatcatatgatatttttggttatgtttttagtacttttctttgaatttaaagacaaataggatgagaattaga 487  Q
    |||||| ||||||||||||||||||| |||||||||||||||||| ||||||||||||| |||||||||| ||||||| |||||    
T  25919647 tgatgatggagcatcatatgatatttctggttatgtttttagtacatttctttgaatttgaagacaaataagatgagagttaga 25919564  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 345 - 444
Target Start/End: Complemental strand, 8402792 - 8402693
Alignment:
Q  345 attctaacttcttgctattgtgtttcttgaggacaagaaacggtttaagtttggggttgtgatgacggagcatcatatgatatttttggttatgttttta 444  Q
    |||||| |||| ||| ||| |||| |||||||| ||| |||| ||||||||||||||||||||||| ||||||||||||||||||| |  ||||||||||    
T  8402792 attctatcttcctgcaattttgttgcttgaggaaaagcaacgatttaagtttggggttgtgatgacagagcatcatatgatattttagactatgttttta 8402693  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 404 - 495
Target Start/End: Original strand, 17637035 - 17637126
Alignment:
Q  404 tgatgacggagcatcatatgatatttttggttatgtttttagtacttttctttgaatttaaagacaaataggatgagaattagagtagttgt 495  Q
    ||||||||||||||||||||| |||||||| ||||||| || |||||||||||| | ||||||||||||| ||| ||||| |||| ||||||    
T  17637035 tgatgacggagcatcatatgacatttttggctatgtttatattacttttctttgtaattaaagacaaataagataagaataagaggagttgt 17637126  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 94 - 234
Target Start/End: Complemental strand, 5633000 - 5632859
Alignment:
Q  94 cttgaatgtctatttagaattgcttcaatctcatagtaaggtacaatcacatgatgactg-agtgtgacaaatgccttgaccagccccatcggctttagg 192  Q
    ||||||||| | ||||||||||||||||||| || | |||||| ||| |||| | ||||| |||||||||||| ||||||  |   | | || |||||||    
T  5633000 cttgaatgtatgtttagaattgcttcaatctaattgcaaggtataattacattacgactgcagtgtgacaaattccttgattatgtctaccgactttagg 5632901  T
Q  193 aggtacatacgtgtatcttggaattttatctggttgaaagta 234  Q
    ||||||||||||||||||||||||| ||  ||||||||||||    
T  5632900 aggtacatacgtgtatcttggaattgtaagtggttgaaagta 5632859  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 345 - 409
Target Start/End: Complemental strand, 5632732 - 5632668
Alignment:
Q  345 attctaacttcttgctattgtgtttcttgaggacaagaaacggtttaagtttggggttgtgatga 409  Q
    ||||||||||||||| ||| |||| |||| ||||||| |||||||||||||||||||||||||||    
T  5632732 attctaacttcttgccattttgttgcttggggacaagcaacggtttaagtttggggttgtgatga 5632668  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 371 - 422
Target Start/End: Original strand, 11521039 - 11521090
Alignment:
Q  371 ttgaggacaagaaacggtttaagtttggggttgtgatgacggagcatcatat 422  Q
    ||||||||||| |||||||||||||||| ||||||||||| |||||||||||    
T  11521039 ttgaggacaagcaacggtttaagtttggcgttgtgatgacagagcatcatat 11521090  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 435 - 495
Target Start/End: Complemental strand, 33914714 - 33914654
Alignment:
Q  435 tatgtttttagtacttttctttgaatttaaagacaaataggatgagaattagagtagttgt 495  Q
    ||||||||||||||||||||||| |||| |||||||||| ||||||| ||| || ||||||    
T  33914714 tatgtttttagtacttttctttgcatttcaagacaaataagatgagagttataggagttgt 33914654  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 413 - 487
Target Start/End: Original strand, 12573231 - 12573305
Alignment:
Q  413 agcatcatatgatatttttggttatgtttttagtac-ttttctttgaatttaaagacaaataggatgagaattaga 487  Q
    |||||||||||| ||||| ||||||||||||||||| ||||||||| |||  |||||||||| ||||||| |||||    
T  12573231 agcatcatatgacatttt-ggttatgtttttagtactttttctttgcattagaagacaaataagatgagagttaga 12573305  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 413 - 487
Target Start/End: Original strand, 13549695 - 13549769
Alignment:
Q  413 agcatcatatgatatttttggttatgtttttagtac-ttttctttgaatttaaagacaaataggatgagaattaga 487  Q
    |||||||||||| ||||| ||||||||||||||||| ||||||||| |||  |||||||||| ||||||| |||||    
T  13549695 agcatcatatgacatttt-ggttatgtttttagtactttttctttgcattagaagacaaataagatgagagttaga 13549769  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 408 - 473
Target Start/End: Original strand, 16970177 - 16970241
Alignment:
Q  408 gacggagcatcatatgatatttttggttatgtttttagtacttttctttgaatttaaagacaaata 473  Q
    ||||||||| |||||||||||||||  |||||||||||| |||||||||| |||| || |||||||    
T  16970177 gacggagca-catatgatatttttgactatgtttttagtgcttttctttgtatttgaacacaaata 16970241  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 404 - 481
Target Start/End: Complemental strand, 19219394 - 19219317
Alignment:
Q  404 tgatgacggagcatcatatgatatttttggttatgtttttagtacttttctttgaatttaaagacaaataggatgaga 481  Q
    |||||||| |||||||||||||| |||| | | ||||||||||| |||||||||  ||| |||| ||||| |||||||    
T  19219394 tgatgacgaagcatcatatgatacttttagctgtgtttttagtatttttctttgcttttgaagataaataagatgaga 19219317  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 501 - 565
Target Start/End: Complemental strand, 10343064 - 10343000
Alignment:
Q  501 gacgaaattagcaagttcatgaaatcgtaacaagtaataaagtagtcagattatcgttcttcaca 565  Q
    |||||||||||||||| ||  |||||||||| ||||||||| |||| || |||||||||| ||||    
T  10343064 gacgaaattagcaagtgcacaaaatcgtaacgagtaataaaatagtaagtttatcgttctccaca 10343000  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 370 - 410
Target Start/End: Original strand, 10883984 - 10884024
Alignment:
Q  370 cttgaggacaagaaacggtttaagtttggggttgtgatgac 410  Q
    |||||||||||| ||||||| ||||||||||||||||||||    
T  10883984 cttgaggacaaggaacggttcaagtttggggttgtgatgac 10884024  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 404 - 471
Target Start/End: Original strand, 18065761 - 18065828
Alignment:
Q  404 tgatgacggagcatcatatgatatttttggttatgtttttagtacttttctttgaatttaaagacaaa 471  Q
    ||||||||| |||| || ||| |||||||| ||||||||| ||| | ||||||| |||||||||||||    
T  18065761 tgatgacggggcattatgtgacatttttggctatgtttttggtaatattctttgcatttaaagacaaa 18065828  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 404 - 493
Target Start/End: Complemental strand, 1475463 - 1475374
Alignment:
Q  404 tgatgacggagcatcatatgatatttttggttatgtttttagtac-ttttctttgaatttaaagacaaataggatgagaattagagtagtt 493  Q
    |||||||  |||||||||||| ||||| || |||||||||||||| ||||||||| |||| ||| | |||| ||||||| |||||| ||||    
T  1475463 tgatgacatagcatcatatgacatttt-ggctatgtttttagtactttttctttgcatttgaagtctaataagatgagagttagaggagtt 1475374  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 407 - 473
Target Start/End: Complemental strand, 31477771 - 31477705
Alignment:
Q  407 tgacggagcatcatatgatatttttggttatgtttttagtacttttctttgaatttaaagacaaata 473  Q
    ||||| |||||||  |||||| || || ||||||||||||  ||||||||| |||||||||||||||    
T  31477771 tgacgaagcatcacttgatatattaggatatgtttttagttattttctttgtatttaaagacaaata 31477705  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 499 - 560
Target Start/End: Original strand, 33913400 - 33913461
Alignment:
Q  499 tggacgaaattagcaagttcatgaaatcgtaacaagtaataaagtagtcagattatcgttct 560  Q
    ||||||||||| |||||| ||  |||| |||||||||||||||||||| |  ||||||||||    
T  33913400 tggacgaaattggcaagtgcaccaaattgtaacaagtaataaagtagtaaatttatcgttct 33913461  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 161 - 209
Target Start/End: Complemental strand, 8770928 - 8770880
Alignment:
Q  161 caaatgccttgaccagccccatcggctttaggaggtacatacgtgtatc 209  Q
    |||||||| |||||||||| |  ||||||||||| ||||||||||||||    
T  8770928 caaatgccgtgaccagccctactggctttaggagatacatacgtgtatc 8770880  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 370 - 410
Target Start/End: Complemental strand, 16223612 - 16223572
Alignment:
Q  370 cttgaggacaagaaacggtttaagtttggggttgtgatgac 410  Q
    |||||||||||| |||  |||||||||||||||||||||||    
T  16223612 cttgaggacaagcaacaatttaagtttggggttgtgatgac 16223572  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 370 - 410
Target Start/End: Original strand, 18541774 - 18541814
Alignment:
Q  370 cttgaggacaagaaacggtttaagtttggggttgtgatgac 410  Q
    |||||||||||| || |||| ||||||||||||||||||||    
T  18541774 cttgaggacaaggaatggttcaagtttggggttgtgatgac 18541814  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 370 - 410
Target Start/End: Original strand, 31283869 - 31283909
Alignment:
Q  370 cttgaggacaagaaacggtttaagtttggggttgtgatgac 410  Q
    |||||||||||| ||  ||||||||||||||||||||||||    
T  31283869 cttgaggacaagcaatagtttaagtttggggttgtgatgac 31283909  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 370 - 410
Target Start/End: Original strand, 47053927 - 47053967
Alignment:
Q  370 cttgaggacaagaaacggtttaagtttggggttgtgatgac 410  Q
    |||||||||||| || |||| ||||||||||||||||||||    
T  47053927 cttgaggacaaggaatggttcaagtttggggttgtgatgac 47053967  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0282 (Bit Score: 59; Significance: 1e-24; HSPs: 1)
Name: scaffold0282
Description:

Target: scaffold0282; HSP #1
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 349 - 471
Target Start/End: Complemental strand, 22783 - 22661
Alignment:
Q  349 taacttcttgctattgtgtttcttgaggacaagaaacggtttaagtttggggttgtgatgacggagcatcatatgatatttttggttatgtttttagtac 448  Q
    |||||||||||||||||||| ||||||| |||| |||  ||||||||||||||||||||||  || ||||||||   |||||||| ||||||||| ||||    
T  22783 taacttcttgctattgtgttgcttgagggcaagcaacactttaagtttggggttgtgatgatagaccatcatataccatttttggctatgttttttgtac 22684  T
Q  449 ttttctttgaatttaaagacaaa 471  Q
    |||| |||| |||| ||||||||    
T  22683 ttttatttgcatttgaagacaaa 22661  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1026 (Bit Score: 48; Significance: 4e-18; HSPs: 2)
Name: scaffold1026
Description:

Target: scaffold1026; HSP #1
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 347 - 466
Target Start/End: Complemental strand, 2071 - 1952
Alignment:
Q  347 tctaacttcttgctattgtgtttcttgaggacaagaaacggtttaagtttggggttgtgatgacggagcatcatatgatatttttggttatgtttttagt 446  Q
    ||||||||||||||||| | || ||||| |||||| |||| |||||||||||||||| ||||| |||  || ||||||| |||||   ||||||||||||    
T  2071 tctaacttcttgctatttttttgcttgatgacaagtaacgttttaagtttggggttgcgatgatggaatataatatgatgtttttaactatgtttttagt 1972  T
Q  447 acttttctttgaatttaaag 466  Q
      ||||||||| ||||||||    
T  1971 tattttctttgcatttaaag 1952  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1026; HSP #2
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 111 - 247
Target Start/End: Complemental strand, 2323 - 2186
Alignment:
Q  111 aattgcttcaatctcatagtaaggtacaatcacatgatgact-gagtgtgacaaatgccttgaccagccccatcggctttaggaggtacatacgtgtatc 209  Q
    |||| ||||||| |||||| || |||||||||||||| |||| ||||||| ||||| || | |||| |  ||  ||||||||||||||||||| ||| ||    
T  2323 aattacttcaatttcatagcaaagtacaatcacatgacgacttgagtgtggcaaataccgtaaccatctgcactggctttaggaggtacatacatgtgtc 2224  T
Q  210 ttggaattttatctggttgaaagtaattgtatcttctc 247  Q
    ||| | || ||  |||||||||||||  ||||||||||    
T  2223 ttgaatttgtacgtggttgaaagtaagagtatcttctc 2186  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0171 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 3)
Name: scaffold0171
Description:

Target: scaffold0171; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 404 - 481
Target Start/End: Original strand, 6128 - 6205
Alignment:
Q  404 tgatgacggagcatcatatgatatttttggttatgtttttagtacttttctttgaatttaaagacaaataggatgaga 481  Q
    |||||||  |||||||||||  |||||||| ||||||||||||||||||||||  ||||||| ||||||| |||||||    
T  6128 tgatgacatagcatcatatggcatttttggctatgtttttagtacttttctttccatttaaacacaaataagatgaga 6205  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0171; HSP #2
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 496 - 568
Target Start/End: Complemental strand, 7421 - 7349
Alignment:
Q  496 tgatggacgaaattagcaagttcatgaaatcgtaacaagtaataaagtagtcagattatcgttcttcacaggt 568  Q
    ||||||||||||||  ||||| ||  ||||||||||||||||||||||||| || |||||||||| |||||||    
T  7421 tgatggacgaaattgacaagtgcaccaaatcgtaacaagtaataaagtagtaagtttatcgttctccacaggt 7349  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0171; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 411 - 473
Target Start/End: Original strand, 21336 - 21398
Alignment:
Q  411 ggagcatcatatgatatttttggttatgtttttagtacttttctttgaatttaaagacaaata 473  Q
    |||||||||||||||||||||  |||||||||||||  ||||||||| |||| |||| |||||    
T  21336 ggagcatcatatgatattttttattatgtttttagtgtttttctttgcatttgaagaaaaata 21398  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0386 (Bit Score: 41; Significance: 0.00000000000006; HSPs: 2)
Name: scaffold0386
Description:

Target: scaffold0386; HSP #1
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 404 - 480
Target Start/End: Complemental strand, 8892 - 8816
Alignment:
Q  404 tgatgacggagcatcatatgatatttttggttatgtttttagtacttttctttgaatttaaagacaaataggatgag 480  Q
    |||||| ||| ||||||||||||||||||||||| |||||||||||||| |||  |||| |||| ||||| ||||||    
T  8892 tgatgatggaacatcatatgatatttttggttatttttttagtacttttattttcattttaagaaaaataagatgag 8816  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0386; HSP #2
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 419 - 488
Target Start/End: Complemental strand, 13239 - 13170
Alignment:
Q  419 atatgatatttttggttatgtttttagtacttttctttgaatttaaagacaaataggatgagaattagag 488  Q
    ||||||||||||| |||||||||||||||||||| |||  || | |||||||||| ||||||| ||||||    
T  13239 atatgatatttttagttatgtttttagtacttttattttcatattaagacaaataagatgagagttagag 13170  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0990 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 2)
Name: scaffold0990
Description:

Target: scaffold0990; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 154 - 257
Target Start/End: Original strand, 3134 - 3237
Alignment:
Q  154 agtgtgacaaatgccttgaccagccccatcggctttaggaggtacatacgtgtatcttggaattttatctggttgaaagtaattgtatcttctctaagtt 253  Q
    ||||||||||||||||||||||  ||||   |  ||||||| |||||| |||||||||| |||| ||| |||||||||||||  ||||| | ||||||||    
T  3134 agtgtgacaaatgccttgaccaatcccactagtcttaggagatacatatgtgtatcttgaaattgtatgtggttgaaagtaagagtatcctttctaagtt 3233  T
Q  254 tgtt 257  Q
    ||||    
T  3234 tgtt 3237  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0990; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 74 - 126
Target Start/End: Original strand, 3075 - 3127
Alignment:
Q  74 gtgtgtatggtgatatagaccttgaatgtctatttagaattgcttcaatctca 126  Q
    |||||| || ||||||| ||||| |||||||||||| ||||||||||||||||    
T  3075 gtgtgtgtgatgatatataccttcaatgtctatttataattgcttcaatctca 3127  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0002 (Bit Score: 39; Significance: 0.0000000000009; HSPs: 1)
Name: scaffold0002
Description:

Target: scaffold0002; HSP #1
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 404 - 481
Target Start/End: Original strand, 446937 - 447014
Alignment:
Q  404 tgatgacggagcatcatatgatatttttggttatgtttttagtactttt-ctttgaatttaaagacaaataggatgaga 481  Q
    ||||||| |||||||||||||||||||| | |||||||||||||||||| ||||  |||| |||||||||| |||||||    
T  446937 tgatgacagagcatcatatgatattttt-gctatgtttttagtacttttcctttacatttgaagacaaataagatgaga 447014  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0188 (Bit Score: 37; Significance: 0.00000000001; HSPs: 1)
Name: scaffold0188
Description:

Target: scaffold0188; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 413 - 473
Target Start/End: Complemental strand, 27128 - 27068
Alignment:
Q  413 agcatcatatgatatttttggttatgtttttagtacttttctttgaatttaaagacaaata 473  Q
    ||||||| |||||||||| || ||||||||||||||||||||||| |||| |||| |||||    
T  27128 agcatcacatgatattttcggctatgtttttagtacttttctttgcatttgaagataaata 27068  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0048 (Bit Score: 33; Significance: 0.000000003; HSPs: 2)
Name: scaffold0048
Description:

Target: scaffold0048; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 370 - 410
Target Start/End: Original strand, 24001 - 24041
Alignment:
Q  370 cttgaggacaagaaacggtttaagtttggggttgtgatgac 410  Q
    |||||||||||| || |||||||||||||||||||||||||    
T  24001 cttgaggacaaggaatggtttaagtttggggttgtgatgac 24041  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0048; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 370 - 410
Target Start/End: Original strand, 28239 - 28279
Alignment:
Q  370 cttgaggacaagaaacggtttaagtttggggttgtgatgac 410  Q
    |||||||||||| ||||||| ||||||||||||||||||||    
T  28239 cttgaggacaaggaacggttcaagtttggggttgtgatgac 28279  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0210 (Bit Score: 31; Significance: 0.00000005; HSPs: 1)
Name: scaffold0210
Description:

Target: scaffold0210; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 345 - 407
Target Start/End: Complemental strand, 25278 - 25216
Alignment:
Q  345 attctaacttcttgctattgtgtttcttgaggacaagaaacggtttaagtttggggttgtgat 407  Q
    |||||||||| || ||||| |||| |||||||||||| |||   |||||||||||||||||||    
T  25278 attctaacttttttctattttgttacttgaggacaagcaacatattaagtttggggttgtgat 25216  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0084 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: scaffold0084
Description:

Target: scaffold0084; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 370 - 411
Target Start/End: Original strand, 28544 - 28585
Alignment:
Q  370 cttgaggacaagaaacggtttaagtttggggttgtgatgacg 411  Q
    |||||||||||| || |||| |||||||||||||||||||||    
T  28544 cttgaggacaaggaatggttcaagtttggggttgtgatgacg 28585  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0321 (Bit Score: 29; Significance: 0.0000008; HSPs: 1)
Name: scaffold0321
Description:

Target: scaffold0321; HSP #1
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 370 - 410
Target Start/End: Complemental strand, 3881 - 3841
Alignment:
Q  370 cttgaggacaagaaacggtttaagtttggggttgtgatgac 410  Q
    |||||||||||| || |||| ||||||||||||||||||||    
T  3881 cttgaggacaaggaatggttcaagtttggggttgtgatgac 3841  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0270 (Bit Score: 29; Significance: 0.0000008; HSPs: 1)
Name: scaffold0270
Description:

Target: scaffold0270; HSP #1
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 370 - 410
Target Start/End: Complemental strand, 1094 - 1054
Alignment:
Q  370 cttgaggacaagaaacggtttaagtttggggttgtgatgac 410  Q
    |||||||||||| || |||| ||||||||||||||||||||    
T  1094 cttgaggacaaggaatggttcaagtttggggttgtgatgac 1054  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0198 (Bit Score: 29; Significance: 0.0000008; HSPs: 1)
Name: scaffold0198
Description:

Target: scaffold0198; HSP #1
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 365 - 409
Target Start/End: Original strand, 3979 - 4023
Alignment:
Q  365 tgtttcttgaggacaagaaacggtttaagtttggggttgtgatga 409  Q
    |||| ||||||||| ||||| |||| |||||||||||||||||||    
T  3979 tgttccttgaggactagaaagggttcaagtttggggttgtgatga 4023  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0072 (Bit Score: 29; Significance: 0.0000008; HSPs: 1)
Name: scaffold0072
Description:

Target: scaffold0072; HSP #1
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 370 - 410
Target Start/End: Complemental strand, 38422 - 38382
Alignment:
Q  370 cttgaggacaagaaacggtttaagtttggggttgtgatgac 410  Q
    |||||||||||| |||  |||||||||||||||||||||||    
T  38422 cttgaggacaagcaacaatttaagtttggggttgtgatgac 38382  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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