View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4203_low_5 (Length: 565)
Name: NF4203_low_5
Description: NF4203
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4203_low_5 |
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Alignment Details
Target: chr1 (Bit Score: 368; Significance: 0; HSPs: 5)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 368; E-Value: 0
Query Start/End: Original strand, 1 - 453
Target Start/End: Complemental strand, 28654741 - 28654294
Alignment:
| Q |
1 |
taccacaccgcgccacgttgctaaaagaaaggatgcatcgcatgactgcatatatatatgtatcattattagctttttcaatttgaaacgatgtaactgt |
100 |
Q |
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| T |
28654741 |
taccacaccgcgccacgttgctaaaagaaaggatgcatcgcatgactgcatatatatatgtatcattattagctttt-caatttgaaacgatgttactgt |
28654643 |
T |
|
| Q |
101 |
tctggtaattatgtaatacacacactcacattgaccatgcaatcgtggaagagatttcgaagccacgaaatggctgtgcttccttgattatacagttcag |
200 |
Q |
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| T |
28654642 |
tgtg-taattatgtaatacacacactcacattgaccatgcaatcatggaagagatttcgaagccacgaaatggctgtgcttccttgattatatagttcag |
28654544 |
T |
|
| Q |
201 |
tgacttgctgcttgattatctcttcggctcttgggcagctggtggagtagtagttcagctggagctggcttttccctgtacataaaaatacatgacaata |
300 |
Q |
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| T |
28654543 |
tgacttgctgcttgattatctcttcggctcttgggcagctggtggagtagtagttcagctggagctggcttttccctgtacataaaaatacatgacaata |
28654444 |
T |
|
| Q |
301 |
ttaaattaaaattagagatgaaattaatgagtcaatatctnnnnnnnt-aataattagaaatggttagaatagatcttaagtccacaatggatatagatt |
399 |
Q |
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| T |
28654443 |
ttaaattaaaattagagatga----aatgattcaatatctaaaaaaataaataattagaaatggttagaatagatcttaagtccacaatggatatagatt |
28654348 |
T |
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| Q |
400 |
tcttgcattcacgtaattagagttgccaatttgaacaatcaaattaagtttcga |
453 |
Q |
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| T |
28654347 |
tcttgcattcacgtaattagagttgccaatttgaactatcaaattaagtttcga |
28654294 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 88; E-Value: 5e-42
Query Start/End: Original strand, 124 - 294
Target Start/End: Complemental strand, 28635327 - 28635154
Alignment:
| Q |
124 |
actcacattgaccatgcaatcgtggaagagatttcgaagccacgaaatggctgtgcttccttgat---tatacagttcagtgacttgctgcttgattatc |
220 |
Q |
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| T |
28635327 |
actcacgttgactgtgcaatcatggaagagatttcgaacccaggaaatggctgtgtttccatgctggttatatagttcagtgacttgttgtttgattatc |
28635228 |
T |
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| Q |
221 |
tcttcggctcttgggcagctggtggagtagtagttcagctggagctggcttttccctgtacataaaaatacatg |
294 |
Q |
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| T |
28635227 |
tcttctgcttttgggcagctgttggagtagtagttcagctggagctgacttttccctgcgcataaaaatacatg |
28635154 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 58; E-Value: 4e-24
Query Start/End: Original strand, 124 - 304
Target Start/End: Complemental strand, 28663017 - 28662834
Alignment:
| Q |
124 |
actcacattgaccatgcaatcgtggaagagatttcgaagccacgaaatggctgtgcttccttgat---tatacagttcagtgacttgctgcttgattatc |
220 |
Q |
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| T |
28663017 |
actcacctcgactatgcaatcatggaagagatttctaacccacgaaaccgctgtgtttccatgctcgttatacagttcaatgactttttgcttgatgatc |
28662918 |
T |
|
| Q |
221 |
tcttcggctcttgggcagctggtggagtagtagttcagctggagctggcttttccctgtacataaaaatacatgacaatattaa |
304 |
Q |
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| T |
28662917 |
tcttctgcttttgggcagctcttggagtagtagttcaattgtagctggcttttccctacgcaaaaaaatacatggcattattaa |
28662834 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 56; E-Value: 6e-23
Query Start/End: Original strand, 124 - 286
Target Start/End: Complemental strand, 28604949 - 28604784
Alignment:
| Q |
124 |
actcacattgaccatgcaatcgtggaagagatttcgaagccacgaaatggctgtgcttccttgatt---atacagttcagtgacttgctgcttgattatc |
220 |
Q |
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| T |
28604949 |
actcaccttgactatgcaatcatggaagagatttctaacccacgaaattgctgtgtttccatgcttgttatacaattcattgacttgttgcttgatgatc |
28604850 |
T |
|
| Q |
221 |
tcttcggctcttgggcagctggtggagtagtagttcagctggagctggcttttccctgtacataaa |
286 |
Q |
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| T |
28604849 |
tcttctgcttttgggcagctcttggagtagtagtttacctgtagttggcttatccctatgcataaa |
28604784 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 508 - 554
Target Start/End: Complemental strand, 28654272 - 28654226
Alignment:
| Q |
508 |
gttagatggatcacatgattgtgataaatatatgattttctgatgat |
554 |
Q |
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| T |
28654272 |
gttagacggatcacatgattgtgacaaatatatgattttctaatgat |
28654226 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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