View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4203_low_6 (Length: 461)
Name: NF4203_low_6
Description: NF4203
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4203_low_6 |
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Alignment Details
Target: chr8 (Bit Score: 212; Significance: 1e-116; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 212; E-Value: 1e-116
Query Start/End: Original strand, 155 - 445
Target Start/End: Complemental strand, 7069538 - 7069251
Alignment:
| Q |
155 |
gattagagaaagtataagaccaaaaacatttataggaatttgaccgaacatgtttcaagttttaaaaacaaacatctaaatgataaatactaaatatatg |
254 |
Q |
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| T |
7069538 |
gattagagaaagtataagaccaaaaacatttattgatatatgaccgaacatgtttcaagttttaaaaacaaacatctaaatgat-aatactaaatatatg |
7069440 |
T |
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| Q |
255 |
ttaattatggacagtggcctttctcatatttgctttacatccaaagaaatgttgtaattcaatttgatacattgttctcttca-nnnnnnnnnnattcta |
353 |
Q |
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| T |
7069439 |
ttaattatggacagtggcctttctcatatttgctttacatccaaagaaa---tgtaattcaatttgatacattgttctcttcattttttattttattcta |
7069343 |
T |
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| Q |
354 |
taggaatgatgccgaacttgttgaagaaatagtaaaaattgttttgaagaggttggatcatgtgcatcttgtcaattcaaaaggacttattg |
445 |
Q |
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| T |
7069342 |
taggaatgatgccgaacttgttgaagaaatagtaaaatttgttttgaagaggttggatcatgtgcatcttgtcaattcaaaaggacttattg |
7069251 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 353 - 445
Target Start/End: Complemental strand, 7081898 - 7081806
Alignment:
| Q |
353 |
ataggaatgatgccgaacttgttgaagaaatagtaaaaattgttttgaagaggttggatcatgtgcatcttgtcaattcaaaaggacttattg |
445 |
Q |
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| T |
7081898 |
ataggtatgatgctgaactcgttgaagaaatagttaaaagtgtgttgaagaggttggatcatgtgcgtgtagttaattcaaaaggagttattg |
7081806 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 367 - 441
Target Start/End: Complemental strand, 7098755 - 7098681
Alignment:
| Q |
367 |
gaacttgttgaagaaatagtaaaaattgttttgaagaggttggatcatgtgcatcttgtcaattcaaaaggactt |
441 |
Q |
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| T |
7098755 |
gaacttattgaagaaatagttaaaagtgtgttgaagaagttggatcatgtgcgaatagttaattcaaaaggactt |
7098681 |
T |
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