View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF4204_high_2 (Length: 511)
Name: NF4204_high_2
Description: NF4204
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4204_high_2 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 207; Significance: 1e-113; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 207; E-Value: 1e-113
Query Start/End: Original strand, 15 - 237
Target Start/End: Original strand, 33116915 - 33117137
Alignment:
| Q |
15 |
ctttttatctctcacacaagctattggagttgcatggacattcatgttgtttggaattgttgctgtcatagcaattttctttgtcctcgttttcgtacct |
114 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||||||||||||||||| |
|
|
| T |
33116915 |
ctttttatctctcacacaagctattggagttgcatggacattcatgttgtttggaattgttgctgtcatagcaagttcctttgtcctcgttttcgtacca |
33117014 |
T |
|
| Q |
115 |
gaaaccaaaggtgttccaattgaggaagtggagaagatgcttcaacaaaggactctgcaattcaagttttggaataagagaatcacctctcagaagggtt |
214 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
|
|
| T |
33117015 |
gaaaccaaaggtgttccaattgaggaagtggagaagatgcttcaacaaaggactctgcaattcaagttttggaataagagaatcgcctctcagaagggtt |
33117114 |
T |
|
| Q |
215 |
gagtcagtttgagttagtttatg |
237 |
Q |
| |
|
||||||||||||||||||||||| |
|
|
| T |
33117115 |
gagtcagtttgagttagtttatg |
33117137 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 122; E-Value: 2e-62
Query Start/End: Original strand, 320 - 462
Target Start/End: Original strand, 33117205 - 33117355
Alignment:
| Q |
320 |
ggattaccagcttaaaaaataagtggaatgaatatccacattgtgaatataaaattatgctactcaacatttggtaaattagagc--------tttcaca |
411 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
|
|
| T |
33117205 |
ggattaccagcttaaaaaataagtggaatgaatatccacattgtgaatataaaattatgctactcaacatttggtaaattagagctttcactgtttcaca |
33117304 |
T |
|
| Q |
412 |
tctcaaatatctaatcgttttgtctttttgttttcaatattctttattcac |
462 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
33117305 |
tctcaaatatctaatcgttttgtctttttgttttcaatattctttattcac |
33117355 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 249 - 281
Target Start/End: Original strand, 33117131 - 33117163
Alignment:
| Q |
249 |
gtttatgactattttcttaggatctgcattaat |
281 |
Q |
| |
|
||||||||||||||||||||||||||||||||| |
|
|
| T |
33117131 |
gtttatgactattttcttaggatctgcattaat |
33117163 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University