View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4204_low_1 (Length: 904)
Name: NF4204_low_1
Description: NF4204
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4204_low_1 |
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Alignment Details
Target: chr6 (Bit Score: 131; Significance: 2e-67; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 131; E-Value: 2e-67
Query Start/End: Original strand, 343 - 630
Target Start/End: Complemental strand, 4150329 - 4150046
Alignment:
| Q |
343 |
atgcaaatattaatgtaaaattt-caagccaaacaaaattactattattaaaataacatttgatatatgtagcaatgacacttcaaattcaaattcaagg |
441 |
Q |
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| T |
4150329 |
atgcaaatattaatgtaaaattttcaagccaaacaaaattactattattaaaataacatttgatctatgtagtagtgacactttaaatttaa------gg |
4150236 |
T |
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| Q |
442 |
tgtccgagtctgtcacgtttcagcatctcacaccaacatga-gctaataagtgtggttacatacaatcacttcaattttccttaattgttatcggtgtct |
540 |
Q |
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| T |
4150235 |
tgtcagagtccgtcacgtttcaatgtctcacaccaccatgatgttaataggtgtgatttcatacaatcacatcaattttctttaattgttttcagtgtct |
4150136 |
T |
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| Q |
541 |
gcatatagatgttggtttcgtgtccggtttgtatgtttgtgtttatgtttcataacatttgatataaggtaaaatcaattctatcactct |
630 |
Q |
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| T |
4150135 |
acgtatagatgtgggtgccgtgttcggtttgtatgtttgtgtcaatgtttcatatcatttgatagaaggtaaaatcaattctaacactct |
4150046 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 58; E-Value: 6e-24
Query Start/End: Original strand, 138 - 211
Target Start/End: Complemental strand, 4150609 - 4150536
Alignment:
| Q |
138 |
tgctttgatctttcaactgcttattttctacagatatcttgaatttcttgaagcatcacaatcttccatcatat |
211 |
Q |
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| T |
4150609 |
tgctttgatctttcaactgcttattttctacagatatcttgaatgtcttgaagcattacaatcttgcaacatat |
4150536 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 36; E-Value: 0.00000000009
Query Start/End: Original strand, 800 - 887
Target Start/End: Complemental strand, 4149870 - 4149783
Alignment:
| Q |
800 |
atcaaattattatgtgtatccgtgccaatgcttcgtaactaattcaaattcaaagttctctaatatttgcaaaccaaagaaaatataa |
887 |
Q |
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| T |
4149870 |
atcaaattattatcagtatctgtgtcaatactttgtagctaattcaaatccaaagttttccaacatttgcaaaccaaacacaatataa |
4149783 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 86; Significance: 1e-40; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 86; E-Value: 1e-40
Query Start/End: Original strand, 647 - 748
Target Start/End: Original strand, 2492770 - 2492871
Alignment:
| Q |
647 |
acataatattgaaccataaaccctgctggagttttctcctgcaatggtttggtaaaatccatggtgatcaaccacgtttgaagcaagagaatccaataaa |
746 |
Q |
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| T |
2492770 |
acataatattgaaccataaatcctgctgttgttttctcctgcaatggtttggtaaaatccatggtgatcaaccacgtttgaagcaagagaattcaataaa |
2492869 |
T |
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| Q |
747 |
gt |
748 |
Q |
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|| |
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| T |
2492870 |
gt |
2492871 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 83; E-Value: 8e-39
Query Start/End: Original strand, 647 - 745
Target Start/End: Original strand, 2489489 - 2489587
Alignment:
| Q |
647 |
acataatattgaaccataaaccctgctggagttttctcctgcaatggtttggtaaaatccatggtgatcaaccacgtttgaagcaagagaatccaataa |
745 |
Q |
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| T |
2489489 |
acataatattgaaccataaaccctgctggagttttctcctacagtggtttggtaaaatccttggtgatcaaccacatttgaagcaagagaatccaataa |
2489587 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 55; E-Value: 4e-22
Query Start/End: Original strand, 647 - 745
Target Start/End: Original strand, 2495900 - 2495998
Alignment:
| Q |
647 |
acataatattgaaccataaaccctgctggagttttctcctgcaatggtttggtaaaatccatggtgatcaaccacgtttgaagcaagagaatccaataa |
745 |
Q |
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| T |
2495900 |
acataatattgtaccataaagcctgttaggcttttttcctacaatggtttggtaaaatccatggctatcaacgacgtttgaagcaagagaatccaataa |
2495998 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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