View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4204_low_2 (Length: 770)
Name: NF4204_low_2
Description: NF4204
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4204_low_2 |
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Alignment Details
Target: chr7 (Bit Score: 602; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 602; E-Value: 0
Query Start/End: Original strand, 25 - 755
Target Start/End: Complemental strand, 28792021 - 28791290
Alignment:
| Q |
25 |
aaaaaagatttaaatatcgattctatataagaaatgatacatgtgggagccttgaagaagggactaaataaattggaagagaagacaagatatgtttgat |
124 |
Q |
| |
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||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
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| T |
28792021 |
aaaaaagatttaaatattgattctatataagaaataatacatgtgggagccttgaagaagggactaaataaattggaagagacgacaagatatgtttgat |
28791922 |
T |
|
| Q |
125 |
catgacacgacgaccacccgtagacaaatttttactcttccaaaccgatacnnnnnnnnnccttctaaatgttatcaagccgaggctcctaaaatgataa |
224 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||| | || | ||||||||||||||||||||||||||||||||| |
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| T |
28791921 |
catgacacgacgaccacccgtagacaaatttttactcttccaaaccgatactttttttttc-ttatgaatgttatcaagccgaggctcctaaaatgataa |
28791823 |
T |
|
| Q |
225 |
tcaaaccgaattaccatcaatatgaaggcccaagtaaataaacggtaattgacccaccttataattaaaaaccacgacaacttctaataatcaatactcc |
324 |
Q |
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|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
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| T |
28791822 |
tcaacacgaattaccatcaatatgaaggcccaagtaaataaacggtaattgacccaccttaaaattaaaaaccacgacaacttctaataatcaatactcc |
28791723 |
T |
|
| Q |
325 |
ttcacattaatacttaccaacagactcttgtgaaaattcacttttaaaccgaaaatgatttcgaaaagaattaaatttgccttcaaagaccgaattttac |
424 |
Q |
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| |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
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| T |
28791722 |
tccacattaatacttaccaacatactcttgtgaaaattcacttttaaaccgaaaatgatttcgaaaagaattaaatttgccctcaaagaccgaattttac |
28791623 |
T |
|
| Q |
425 |
tc-aacttttctcggccagaagtagtgtcacgttagaaaattgtaaatgggagacctgaaagtccgagtctgccgaaacaccatatccggtaaaaatggc |
523 |
Q |
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|| |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
28791622 |
tccaacttttctcggccagaagtagtgtcacattagaaaattgtaaatgggagacctgaaagtccgagtctgccgaaacaccatatccggtaaaaatggc |
28791523 |
T |
|
| Q |
524 |
gacacgaacagatgcatttaacattacattcaaaccttttgctgcaataagaacaagaaaggtgagaaagggtcaccttgatgcaatcccctgcctaact |
623 |
Q |
| |
|
||||| |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||| |
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| T |
28791522 |
cgcacgagcagatgcatttaacattacattcaaaccttttgctgcaataaaaacaagaaaggtgagaaagggtcaccttgatgcaaccccctgcctaact |
28791423 |
T |
|
| Q |
624 |
taaactcatattgagatttccatgaactaagactgagattgttgctgatgtcacacattccataatccagttacatcaaattatcaaaaatcccatt-tt |
722 |
Q |
| |
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|||||| |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| || |
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| T |
28791422 |
taaactgatattgggatttccatgaactaagactgagattgttgctgatgtcacacattccataatccagttgcatcaaattatcaaaaatcccattttt |
28791323 |
T |
|
| Q |
723 |
ttgcaaagccacttcccactctattgaatcata |
755 |
Q |
| |
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||||||||||||||||||||||||||||||||| |
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| T |
28791322 |
ttgcaaagccacttcccactctattgaatcata |
28791290 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 32; Significance: 0.00000002; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 34 - 85
Target Start/End: Complemental strand, 23805259 - 23805208
Alignment:
| Q |
34 |
ttaaatatcgattctatataagaaatgatacatgtgggagccttgaagaagg |
85 |
Q |
| |
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||||| || ||||| ||| |||||||||||||||||| |||||||||||||| |
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|
| T |
23805259 |
ttaaaaatagattcaatagaagaaatgatacatgtggaagccttgaagaagg |
23805208 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 31; Significance: 0.00000007; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 25 - 87
Target Start/End: Original strand, 4110104 - 4110166
Alignment:
| Q |
25 |
aaaaaagatttaaatatcgattctatataagaaatgatacatgtgggagccttgaagaaggga |
87 |
Q |
| |
|
||||||||||||| || ||||| || ||||||| ||||||||||||| ||||||||||||| |
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|
| T |
4110104 |
aaaaaagatttaagaatggattcaatgaaagaaataatacatgtgggagtcttgaagaaggga |
4110166 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 31; Significance: 0.00000007; HSPs: 4)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 537 - 586
Target Start/End: Complemental strand, 13580360 - 13580310
Alignment:
| Q |
537 |
gcatttaacattacattcaaaccttttgctgcaataa-gaacaagaaaggt |
586 |
Q |
| |
|
|||||||||||||||||||| ||||||||| |||||| |||||| |||||| |
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| T |
13580360 |
gcatttaacattacattcaacccttttgctacaataaggaacaaaaaaggt |
13580310 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 537 - 586
Target Start/End: Original strand, 13590906 - 13590956
Alignment:
| Q |
537 |
gcatttaacattacattcaaaccttttgctgcaataa-gaacaagaaaggt |
586 |
Q |
| |
|
|||||||||||||||||||| ||||||||| |||||| |||||| |||||| |
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| T |
13590906 |
gcatttaacattacattcaacccttttgctacaataaggaacaaaaaaggt |
13590956 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 50 - 84
Target Start/End: Complemental strand, 15216790 - 15216756
Alignment:
| Q |
50 |
tataagaaatgatacatgtgggagccttgaagaag |
84 |
Q |
| |
|
||||||| ||||||||||||||||||||||||||| |
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| T |
15216790 |
tataagagatgatacatgtgggagccttgaagaag |
15216756 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 574 - 627
Target Start/End: Complemental strand, 4226692 - 4226639
Alignment:
| Q |
574 |
gaacaagaaaggtgagaaagggtcaccttgatgcaatcccctgcctaacttaaa |
627 |
Q |
| |
|
||||||||||||||| | |||||||||||| ||||| ||||| |||||| |||| |
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|
| T |
4226692 |
gaacaagaaaggtgaaatagggtcaccttggtgcaaaccccttcctaacgtaaa |
4226639 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 31; Significance: 0.00000007; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 53 - 83
Target Start/End: Complemental strand, 46840600 - 46840570
Alignment:
| Q |
53 |
aagaaatgatacatgtgggagccttgaagaa |
83 |
Q |
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||||||||||||||||||||||||||||||| |
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| T |
46840600 |
aagaaatgatacatgtgggagccttgaagaa |
46840570 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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