View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4204_low_5 (Length: 510)
Name: NF4204_low_5
Description: NF4204
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4204_low_5 |
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Alignment Details
Target: chr3 (Bit Score: 450; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 450; E-Value: 0
Query Start/End: Original strand, 6 - 494
Target Start/End: Complemental strand, 47307872 - 47307383
Alignment:
| Q |
6 |
gatgaaaaaacaaaacacattgaagatttgtaaagttggttatattggttagaaagaaaataaccaaatgcttgtaaaaacaaacccgtaacaatcttct |
105 |
Q |
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| T |
47307872 |
gatgaaaaaacaaaacacaatgaagatttgtaaagttggttatattggctagaaagaaaataaccaaatgcttgtaaaaacaaacccgtaacaatcttct |
47307773 |
T |
|
| Q |
106 |
gctaatagtggagcatgaagtattatttcatgaatcagaagattcttagttgctccttcagcatggctaacacaatactgcagcacacaacatccggtct |
205 |
Q |
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| T |
47307772 |
gctaatagtggagcatgaagtattatttcatgaatcagaagattcttagttgctccttgagcatggctaacacaatactgcagcacacaacatccggtct |
47307673 |
T |
|
| Q |
206 |
tatctcttgaaagtgacaaagaatttcttgcaataactcccaggaatttctgtgacagaagtccataatcag-aacataaactgaagttaagtaatttta |
304 |
Q |
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| T |
47307672 |
tatctcttgaaagtgacaaagaatttcttgcaataactcccaggaatttctgtgacaaaagtccataatcagaaacataaactgaagttaagtaatttta |
47307573 |
T |
|
| Q |
305 |
caaaccggtatttatctaataagagtggctatcctttttcctttctttagaacttaggcaaagagataacaaataattgtataaatgctgaagtgctaat |
404 |
Q |
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|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| | |
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| T |
47307572 |
caaaccggtatttatctaataagagtggttatcctttttcctttctttagaacttaggcaaagagataacaaataattgtatatatgctgaagtgctagt |
47307473 |
T |
|
| Q |
405 |
ccaaacaagagcaaacataccgctattcctttactctaaaaaatgtggataaagaaaggaatacttaaaacaaagtgtacagttaaatat |
494 |
Q |
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| T |
47307472 |
ccaaacaagagcaaacataccgctattcatttactctaaaaaatgtggataaagaaaggaatacttaaaacaaagtgtacagttaaatat |
47307383 |
T |
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