View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4204_low_8 (Length: 259)
Name: NF4204_low_8
Description: NF4204
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4204_low_8 |
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Alignment Details
Target: chr7 (Bit Score: 155; Significance: 2e-82; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 155; E-Value: 2e-82
Query Start/End: Original strand, 25 - 237
Target Start/End: Complemental strand, 45437985 - 45437773
Alignment:
| Q |
25 |
atgccatgccaataaaatacattatatatcaacaacagtttcttctctaatctcataattatattctaaaaggagattgaaatattaaaatttggatnnn |
124 |
Q |
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| T |
45437985 |
atgccatgccaataaaatacattatatatcaacaacagtttcttctctaatctcataattatatgctaaaaggagattgaaatattaaaatttggattat |
45437886 |
T |
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| Q |
125 |
nnnnnnnnnnnnnnncctgcttgcttaggaactgaactccaacatccatgaccatatttagtaatatgattcaaaagtttttcatcctcctcaggtgacc |
224 |
Q |
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| T |
45437885 |
atataaatatatatacctgcttgcttaggaactgaactccaacatccatgaccatatttagtaatatgattcaaaagtttttcatcctcctcaggtgacc |
45437786 |
T |
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| Q |
225 |
atagacctttcct |
237 |
Q |
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| T |
45437785 |
atagacctttcct |
45437773 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 152 - 234
Target Start/End: Original strand, 45676263 - 45676345
Alignment:
| Q |
152 |
ggaactgaactccaacatccatgaccatatttagtaatatgattcaaaagtttttcatcctcctcaggtgaccatagaccttt |
234 |
Q |
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| T |
45676263 |
ggaactgagctccaacatccatgaccatgtttggtgatataattcaaaagcttttcatcttcttctggggaccaaagaccttt |
45676345 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 1 - 35
Target Start/End: Complemental strand, 45438019 - 45437985
Alignment:
| Q |
1 |
ctcttaccacatctttgaagacctatgccatgcca |
35 |
Q |
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| T |
45438019 |
ctcttaccacatctttgaagacctatgccatgcca |
45437985 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 54; Significance: 4e-22; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 140 - 237
Target Start/End: Original strand, 38269725 - 38269822
Alignment:
| Q |
140 |
cctgcttgcttaggaactgaactccaacatccatgaccatatttagtaatatgattcaaaagtttttcatcctcctcaggtgaccatagacctttcct |
237 |
Q |
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| T |
38269725 |
cctgcttgcttaggtactgaactccaacatccatgaccatactttgttatatgcctcagtagtttttcatcttcttctggtgaccatagacctttcct |
38269822 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 155 - 238
Target Start/End: Complemental strand, 37962741 - 37962658
Alignment:
| Q |
155 |
actgaactccaacatccatgaccatatttagtaatatgattcaaaagtttttcatcctcctcaggtgaccatagacctttcctt |
238 |
Q |
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||||||||||||||||||||||||| ||| ||||| | ||||||||| || ||||| |||||||| ||||| || ||||||||| |
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| T |
37962741 |
actgaactccaacatccatgaccatgtttggtaatgtaattcaaaagcttctcatcttcctcaggagaccaaagtcctttcctt |
37962658 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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