View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4205_high_15 (Length: 334)
Name: NF4205_high_15
Description: NF4205
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4205_high_15 |
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Alignment Details
Target: chr5 (Bit Score: 189; Significance: 1e-102; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 189; E-Value: 1e-102
Query Start/End: Original strand, 31 - 304
Target Start/End: Original strand, 3519895 - 3520168
Alignment:
| Q |
31 |
ggacgaccccaaggaccataaacggtaaagaaacgtaaaccagtcatggaaagaccataaatatgattataagtatgtgcaaattcttcaccagcnnnnn |
130 |
Q |
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| T |
3519895 |
ggacgaccccaaggaccataaacagtgaagaaacgtaaaccagttacggaaagaccataaatatgattataagtatgtgcaaattcttcaccagctttct |
3519994 |
T |
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| Q |
131 |
nngttgctgcatagagactagcgggttgatccgtccgatccttttccgaaaaaggaactttcgaattcaacccataaaccgaactcgaagaagcgtaaac |
230 |
Q |
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| T |
3519995 |
tcgtcgctgcatagagactagcaggttgatccgttcgatccttttccgaaaaaggagtcttcgaatttaacccgtaaaccgaactcgaagaagcgtaaac |
3520094 |
T |
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| Q |
231 |
aatagccggttgaggttttgccgatttagaaacttcaaggaggttaacaaaacctgcagaataagccataactt |
304 |
Q |
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| T |
3520095 |
aatcgccggttgagggtttgccgatttagaaacttcaaggaggttaacaaaacctgtagaataaaccataactt |
3520168 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 48; Significance: 2e-18; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 37 - 245
Target Start/End: Complemental strand, 54114700 - 54114492
Alignment:
| Q |
37 |
ccccaaggaccataaacggtaaagaaacgtaaaccagtcatggaaagaccataaatatgattataagtatgtgcaaattcttcaccagcnnnnnnngttg |
136 |
Q |
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| T |
54114700 |
ccccatggtccataaacagtaaaaaatcgtaaaccggtgattgaaagaccgtaaatgtgattataagtgtgagtgatttcttcacctgctttcttcgtcg |
54114601 |
T |
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| Q |
137 |
ctgcatagagactagcgggttgatccgtccgatccttttccgaaaaaggaactttcgaattcaacccataaaccgaactcgaagaagcgtaaacaatagc |
236 |
Q |
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| T |
54114600 |
ctgcatataaactcgccggttgatcggtccgatccgattcagaaaacggaactttctcgtttaaaccataaaccgaactcgaagaagcccaaacaatcga |
54114501 |
T |
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| Q |
237 |
cggttgagg |
245 |
Q |
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||||||||| |
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| T |
54114500 |
cggttgagg |
54114492 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 91 - 258
Target Start/End: Original strand, 42373251 - 42373418
Alignment:
| Q |
91 |
atatgattataagtatgtgcaaattcttcaccagcnnnnnnngttgctgcatagagactagcgggttgatccgtccgatccttttccgaaaaaggaactt |
190 |
Q |
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| T |
42373251 |
atatgattataagtatgtgcaattccttcaccggctttcttcgtcgccgcgtagagactcgccggttggtctgttcgatctttctccgaaaaaggaacct |
42373350 |
T |
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| Q |
191 |
tcgaattcaacccataaaccgaactcgaagaagcgtaaacaatagccggttgaggttttgccgattta |
258 |
Q |
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| T |
42373351 |
tcgaattcaatccataaacggagctggacgaagcccaaacaattgctggttgaggatttgcagattta |
42373418 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 36 - 215
Target Start/End: Original strand, 8315792 - 8315971
Alignment:
| Q |
36 |
accccaaggaccataaacggtaaagaaacgtaaaccagtcatggaaagaccataaatatgattataagtatgtgcaaattcttcaccagcnnnnnnngtt |
135 |
Q |
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|||||||||||||||||| || || || | |||||||| | ||||||||||| |||||||||||||||||||| | ||||||||| || || |
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| T |
8315792 |
accccaaggaccataaacagtgaaaaacctcaaaccagttaaagaaagaccatagatatgattataagtatgtgcgatttcttcaccggctttcttagta |
8315891 |
T |
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| Q |
136 |
gctgcatagagactagcgggttgatccgtccgatccttttccgaaaaaggaactttcgaattcaacccataaaccgaact |
215 |
Q |
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|| ||||| | |||||| |||||||| || | ||| |||| ||||||||||| || | |||||| |||||||| ||||| |
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| T |
8315892 |
gcggcatacaaactagcaggttgatcagttctatctctttcagaaaaaggaaccttagtattcaatccataaacagaact |
8315971 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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