View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4205_high_19 (Length: 286)
Name: NF4205_high_19
Description: NF4205
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4205_high_19 |
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| [»] scaffold0187 (4 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 223; Significance: 1e-123; HSPs: 5)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 223; E-Value: 1e-123
Query Start/End: Original strand, 17 - 270
Target Start/End: Original strand, 37855281 - 37855543
Alignment:
| Q |
17 |
accccatagcttccaagttgtagcacaacataacacacttccttcattcaattgttatctagtcactaagagtcaccactcatcactctctcctaactag |
116 |
Q |
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||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37855281 |
accccctagcttccaagttgtagcacaacataacacacttccttcattcaattgttatctagtcactaagagtcaccactcatcactctctcctaactag |
37855380 |
T |
|
| Q |
117 |
tgagtaaaatgggaggaaacaatcaaaggaagtcatctaaatcatcatcattcaggtcagttttcaacatattcaaatctagcagtaacaagcaaa---- |
212 |
Q |
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||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37855381 |
tgagtgaaatgggaggaaacaatcaaaggaagtcatctaaatcatcatcattcaggtcagttttcaacatattcaaatctagcagtaacaagcaaagagg |
37855480 |
T |
|
| Q |
213 |
-----gagggtattattatgataatgcttcatatgataacaaagtgtggccaagtgatgaaga |
270 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37855481 |
aggaggagggtattattatgataatgcttcatatgataacaaagtgtggccaagtgatgaaga |
37855543 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 129; E-Value: 8e-67
Query Start/End: Original strand, 119 - 270
Target Start/End: Original strand, 37867571 - 37867731
Alignment:
| Q |
119 |
agtaaaatgggaggaaacaatcaaaggaagtcatctaaatcatcatcattcaggtcagttttcaacatattcaaatctagcagtaacaagcaaa------ |
212 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37867571 |
agtaaaatgggaggaaacaatcaaaggaagtcatctaaatcatcatcattcaggtcagttttcaacatattcaaatctagcagtaacaagcaaagaggag |
37867670 |
T |
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| Q |
213 |
---gagggtattattatgataatgcttcatatgataacaaagtgtggccaagtgatgaaga |
270 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37867671 |
gaggagggtattattatgataatgcttcatatgataacaaagtgtggccaagtgatgaaga |
37867731 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 121; E-Value: 5e-62
Query Start/End: Original strand, 123 - 270
Target Start/End: Original strand, 37881615 - 37881771
Alignment:
| Q |
123 |
aaatgggaggaaacaatcaaaggaagtcatctaaatcatcatcattcaggtcagttttcaacatattcaaatctagcagtaacaagcaaa---------g |
213 |
Q |
| |
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||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |
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| T |
37881615 |
aaatgggaggaaacagtcaaaggaagtcatctaaatcatcatcattcaggtcagttttcaacatattcaaatctagcagtaacaagcaaagaggaggagg |
37881714 |
T |
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| Q |
214 |
agggtattattatgataatgcttcatatgataacaaagtgtggccaagtgatgaaga |
270 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37881715 |
agggtattattatgataatgcttcatatgataacaaagtgtggccaagtgatgaaga |
37881771 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 118; E-Value: 3e-60
Query Start/End: Original strand, 119 - 270
Target Start/End: Original strand, 37911553 - 37911716
Alignment:
| Q |
119 |
agtaaaatgggaggaaaca---atcaaaggaagtcatctaaatcatcatcattcaggtcagttttcaacatattcaaatctagcagtaacaagcaaa--- |
212 |
Q |
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|
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37911553 |
agtaaaatgggaggaaacaacaatcaaaggaagtcatctaaatcatcatcattcaggtcagttttcaacatattcaaatctagcagtaacaagcaaagag |
37911652 |
T |
|
| Q |
213 |
------gagggtattattatgataatgcttcatatgataacaaagtgtggccaagtgatgaaga |
270 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37911653 |
gaggaggagggtattattatgataatgcttcatatgataacaaagtgtggccaagtgatgaaga |
37911716 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 17 - 53
Target Start/End: Original strand, 37867457 - 37867493
Alignment:
| Q |
17 |
accccatagcttccaagttgtagcacaacataacaca |
53 |
Q |
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|||||||||||||||||||||||||||||| |||||| |
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| T |
37867457 |
accccatagcttccaagttgtagcacaacacaacaca |
37867493 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 121; Significance: 5e-62; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 121; E-Value: 5e-62
Query Start/End: Original strand, 119 - 270
Target Start/End: Complemental strand, 9239833 - 9239673
Alignment:
| Q |
119 |
agtaaaatgggaggaaacaatcaaaggaagtcatctaaatcatcatcattcaggtcagttttcaacatattcaaatctagcagtaacaagcaaa------ |
212 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
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| T |
9239833 |
agtaaaatgggaggaaacaatcaaaggaagtcatctaaatcatcatcattcaggtcagttttcaacatattcaaatctagcaataacaagcaaagaggag |
9239734 |
T |
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| Q |
213 |
---gagggtattattatgataatgcttcatatgataacaaagtgtggccaagtgatgaaga |
270 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
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| T |
9239733 |
gaggagggtattattatgataatgcttcatatgataacaaagtgtggcctagtgatgaaga |
9239673 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0187 (Bit Score: 118; Significance: 3e-60; HSPs: 4)
Name: scaffold0187
Description:
Target: scaffold0187; HSP #1
Raw Score: 118; E-Value: 3e-60
Query Start/End: Original strand, 119 - 270
Target Start/End: Complemental strand, 27524 - 27361
Alignment:
| Q |
119 |
agtaaaatgggaggaaacaa---tcaaaggaagtcatctaaatcatcatcattcaggtcagttttcaacatattcaaatctagcagtaacaagcaaa--- |
212 |
Q |
| |
|
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
27524 |
agtaaaatgggaggaaacaacaatcaaaggaagtcatctaaatcatcatcattcaggtcagttttcaacatattcaaatctagcagtaacaagcaaagag |
27425 |
T |
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| Q |
213 |
------gagggtattattatgataatgcttcatatgataacaaagtgtggccaagtgatgaaga |
270 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
27424 |
gaggaggagggtattattatgataatgcttcatatgataacaaagtgtggccaagtgatgaaga |
27361 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0187; HSP #2
Raw Score: 92; E-Value: 1e-44
Query Start/End: Original strand, 17 - 271
Target Start/End: Complemental strand, 6947 - 6704
Alignment:
| Q |
17 |
accccatagcttccaagttgtagcacaacataacacacttccttcattcaattgttatctagtcactaagagtcaccactcatcactctctcctaactag |
116 |
Q |
| |
|
||||| ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |||||| |||||| | |||||||| |
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| T |
6947 |
accccctagcttccaagttttagcacaacataacacacttccttcattcaattgttatctagtcat----------cactcaccactctatactaactag |
6858 |
T |
|
| Q |
117 |
tgagtaaaatgggaggaaacaatcaaaggaagtcatctaaatcatcatcattcaggtcagttttcaacatattcaaatctagcagtaacaagcaaa---- |
212 |
Q |
| |
|
||| ||||||||||||||||||||||||||| ||||||||||||| ||||||| ||||||||||| || |||||||| ||||||||||||| |
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|
| T |
6857 |
tga----aatgggaggaaacaatcaaaggaagtcttctaaatcatcat---tcaggtctgttttcaacatttttaaatctagtagtaacaagcaaagagg |
6765 |
T |
|
| Q |
213 |
--gagggtattattatgataatgcttcatatgataacaaagtgtggccaagtgatgaagat |
271 |
Q |
| |
|
|||| | ||||||||| ||| | | |||| ||||||||| |||||||||||||||||| |
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|
| T |
6764 |
tggaggagagtattatgatcatggtgcttatgctaacaaagtatggccaagtgatgaagat |
6704 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0187; HSP #3
Raw Score: 92; E-Value: 1e-44
Query Start/End: Original strand, 17 - 271
Target Start/End: Complemental strand, 17275 - 17032
Alignment:
| Q |
17 |
accccatagcttccaagttgtagcacaacataacacacttccttcattcaattgttatctagtcactaagagtcaccactcatcactctctcctaactag |
116 |
Q |
| |
|
||||| ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |||||| |||||| | |||||||| |
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| T |
17275 |
accccctagcttccaagttttagcacaacataacacacttccttcattcaattgttatctagtcat----------cactcaccactctatactaactag |
17186 |
T |
|
| Q |
117 |
tgagtaaaatgggaggaaacaatcaaaggaagtcatctaaatcatcatcattcaggtcagttttcaacatattcaaatctagcagtaacaagcaaa---- |
212 |
Q |
| |
|
||| ||||||||||||||||||||||||||| ||||||||||||| ||||||| ||||||||||| || |||||||| ||||||||||||| |
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|
| T |
17185 |
tga----aatgggaggaaacaatcaaaggaagtcttctaaatcatcat---tcaggtctgttttcaacatttttaaatctagtagtaacaagcaaagagg |
17093 |
T |
|
| Q |
213 |
--gagggtattattatgataatgcttcatatgataacaaagtgtggccaagtgatgaagat |
271 |
Q |
| |
|
|||| | ||||||||| ||| | | |||| ||||||||| |||||||||||||||||| |
|
|
| T |
17092 |
tggaggagagtattatgatcatggtgcttatgctaacaaagtatggccaagtgatgaagat |
17032 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0187; HSP #4
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 119 - 172
Target Start/End: Complemental strand, 57 - 1
Alignment:
| Q |
119 |
agtaaaatgggaggaaacaa---tcaaaggaagtcatctaaatcatcatcattcagg |
172 |
Q |
| |
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|||||||||||||||||||| ||| |||||||||||||||||||||||||||||| |
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| T |
57 |
agtaaaatgggaggaaacaacaatcagaggaagtcatctaaatcatcatcattcagg |
1 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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