View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4205_high_2 (Length: 910)
Name: NF4205_high_2
Description: NF4205
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4205_high_2 |
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Alignment Details
Target: chr4 (Bit Score: 671; Significance: 0; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 671; E-Value: 0
Query Start/End: Original strand, 14 - 712
Target Start/End: Complemental strand, 42548417 - 42547719
Alignment:
| Q |
14 |
cacagaaccattctacaaaacaatgttcagaatttgcaccagttattggaaacaacaatgaggaagatgcacatgatcttttcaattttgtgaaaaggtc |
113 |
Q |
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| T |
42548417 |
cacagaaccattctacaaaacaatgttcagaatttgcaccagttattggaaacaacaatgaggaagatgcacatgatcttttcaattttgtgaaaaggtc |
42548318 |
T |
|
| Q |
114 |
agttccatccaatgatttgatgattaacgcggagaacctactgttcgattacatcgaacaaagcattgaggaaaataatgttattgttaattgtacaaag |
213 |
Q |
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| T |
42548317 |
agttccatccaatgatttgatgattaacgcggagaacctactgttcgattacatcgaacaaagcattgaggaaaataatgttaatgttaattgttcaaag |
42548218 |
T |
|
| Q |
214 |
aagcttaacttttgcaaggtggttgaggattggatacaagggcaaccccaagaactgtatttgggttgggaagtgaaagaaggaagacatgtttacatta |
313 |
Q |
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| T |
42548217 |
aagcttaacttttgcaaggtggttgaggattggatacaagggcaaccccaagaactgtatttgggttgggaagtgaaagaaggaagacatgtttacatta |
42548118 |
T |
|
| Q |
314 |
gtgagatggaaaaatgtggagagtggaaaaacactgatcaagaaacagaacaacttgttcttgacctggaaaacgaggttttaactagtttggttaacga |
413 |
Q |
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| T |
42548117 |
gtgagatggaaaaatgtggagagtggaaaaacactgatcaagaaacagaacaacttgttcttgacctggaaaacgaggttttaactagtttggttaacga |
42548018 |
T |
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| Q |
414 |
gatcatccttgatctcgttaaataggctagatagtcatggatatgatatgttgcaagtacatttgcttcttatgttttgtattttatgaactttactttc |
513 |
Q |
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| T |
42548017 |
gatcatccttgatctcgttaaataggctagatagtcatggatatgatatgttgcaagtacatttgcttcttatgttttgtattttatgaactttactttc |
42547918 |
T |
|
| Q |
514 |
tgtctcgttccctgtctcggggaaacagacagataaattttgaaacaatttaggatatctatgtttagatttggttctaatggttttcttcaacacatct |
613 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42547917 |
tgtctcgttccctgtctcggggaaacagacagataaattttgaaacaatttaggatatctatgtttagatttggttctaatggttttcttcaacacatct |
42547818 |
T |
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| Q |
614 |
ttagtgctttggttggatagggtatattaaaatttgagagatgccgattgaaattcatcttttgcatgcagcaaacctacatttgtaggccagtggcat |
712 |
Q |
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| T |
42547817 |
ttagtgctttggttagatagggtatattagaatttgagagataccgattgaaattcatcttttgcacgcagcaaacctacatttgtaggccagcggcat |
42547719 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 191; E-Value: 1e-103
Query Start/End: Original strand, 706 - 908
Target Start/End: Complemental strand, 42546996 - 42546794
Alignment:
| Q |
706 |
gtggcatgatgttaagctcatacaattttttgcttctatgatattccgtagaaactctttccattagtaatgatgtatgtaatttggaagagttctttgt |
805 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
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| T |
42546996 |
gtggcatgatgttaagctcatacaattttttgcttctatgatattccgtagaaactctttccattagtaataatgtatgtaatttggaagagttctttgt |
42546897 |
T |
|
| Q |
806 |
atttcatagggaaaaagtgaggagtgtcatcacttgcttgtggaatatttggaagagcataatcaagatgttttggtaatcggcaacgtttagcatgggg |
905 |
Q |
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||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
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| T |
42546896 |
atttcattgggaaaaagtgaggagtgtcatcacttgcttgtggaatatttggaagagcataatcaagatgttttggaaatcggcaacgtttagcatgggg |
42546797 |
T |
|
| Q |
906 |
aaa |
908 |
Q |
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||| |
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| T |
42546796 |
aaa |
42546794 |
T |
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