View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4205_high_26 (Length: 237)

Name: NF4205_high_26
Description: NF4205
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4205_high_26
NF4205_high_26
[»] chr6 (2 HSPs)
chr6 (3-188)||(27131501-27131687)
chr6 (75-164)||(4036805-4036893)
[»] chr8 (1 HSPs)
chr8 (75-154)||(5973318-5973398)
[»] chr5 (3 HSPs)
chr5 (70-134)||(34425655-34425719)
chr5 (46-134)||(15639206-15639296)
chr5 (70-154)||(2024928-2025010)
[»] chr7 (2 HSPs)
chr7 (48-113)||(7398225-7398291)
chr7 (81-179)||(36903599-36903696)
[»] chr4 (2 HSPs)
chr4 (46-109)||(27111814-27111878)
chr4 (45-109)||(36363129-36363196)


Alignment Details
Target: chr6 (Bit Score: 125; Significance: 2e-64; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 125; E-Value: 2e-64
Query Start/End: Original strand, 3 - 188
Target Start/End: Original strand, 27131501 - 27131687
Alignment:
Q  3 tgaagtgatggtgatggaacgcgataatgcgtgatatcagaattcagagagaaagagaataagaatcttttt--gtgggatagtacttaatagtactact 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  ||||| |||||||||| |||||||||    
T  27131501 tgaagtgatggtgatggaacgcgataatgcgtgatatcagaattcagagagaaagagaataagaatcttttttagtggggtagtacttaacagtactact 27131600  T
Q  101 gagctataaatttattatgagactcataccttggagagacgcagctctattgagtcttttgcacctcaaagtccggccctgcacacta 188  Q
    || |||||||||||||||||||| ||||||||| |||| | |||||| ||||||  ||||||||| ||||||||||||||| ||||||    
T  27131601 gaactataaatttattatgagacccataccttgaagaggctcagctccattgagctttttgcacc-caaagtccggccctgtacacta 27131687  T

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Target: chr6; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 75 - 164
Target Start/End: Complemental strand, 4036893 - 4036805
Alignment:
Q  75 gtgggatagtacttaatagtactactgagctataaatttattatgagactcataccttggagagacgcagctctattgagtcttttgcac 164  Q
    ||||||||||||||| ||||||||||| ||||| ||||| || |||| ||||||| |||| ||| | || ||| ||||||  ||||||||    
T  4036893 gtgggatagtacttagtagtactactgggctat-aattttttttgaggctcatacattggggaggcccaactccattgagcgttttgcac 4036805  T

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Target: chr8 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 75 - 154
Target Start/End: Original strand, 5973318 - 5973398
Alignment:
Q  75 gtgggatagtacttaatagtactactgagctataa-atttattatgagactcataccttggagagacgcagctctattgag 154  Q
    ||||| |||||||||||| ||||||||||||||||  |||||| | |||| |||||||||| ||| | |||||| ||||||    
T  5973318 gtggggtagtacttaataatactactgagctataatttttattttaagacccataccttggggaggcccagctccattgag 5973398  T

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Target: chr5 (Bit Score: 33; Significance: 0.000000001; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 70 - 134
Target Start/End: Complemental strand, 34425719 - 34425655
Alignment:
Q  70 tttttgtgggatagtacttaatagtactactgagctataaatttattatgagactcataccttgg 134  Q
    |||| ||||| ||||||||| || |||||||| ||||||||||| || ||| |||||||||||||    
T  34425719 ttttagtggggtagtacttagtaatactactgggctataaattttttttgaaactcataccttgg 34425655  T

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Target: chr5; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 46 - 134
Target Start/End: Complemental strand, 15639296 - 15639206
Alignment:
Q  46 tcagagagaaagagaataag-aatcttttt-gtgggatagtacttaatagtactactgagctataaatttattatgagactcataccttgg 134  Q
    |||||||||||||||||||| ||| ||||| ||||| ||||||||| |||||||||||  |||||| ||| || | || | ||||||||||    
T  15639296 tcagagagaaagagaataagtaatttttttagtggggtagtacttagtagtactactggactataattttttttttaggcccataccttgg 15639206  T

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Target: chr5; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 70 - 154
Target Start/End: Original strand, 2024928 - 2025010
Alignment:
Q  70 tttttgtgggatagtacttaatagtactactgagctataaatttattatgagactcataccttggagagacgcagctctattgag 154  Q
    |||| ||||| ||||||||| ||||||||||| |||||||  || || | |||| |||||||||| ||| ||||| |||||||||    
T  2024928 ttttagtggggtagtacttagtagtactactgggctataa--ttttttttagacccataccttggggaggcgcagttctattgag 2025010  T

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Target: chr7 (Bit Score: 31; Significance: 0.00000002; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 48 - 113
Target Start/End: Complemental strand, 7398291 - 7398225
Alignment:
Q  48 agagagaaagagaataagaatctttttgtggga-tagtacttaatagtactactgagctataaattt 113  Q
    ||||||||||| ||||||||| |||||  |||  ||||||||| ||||||||||| |||||||||||    
T  7398291 agagagaaagaaaataagaattttttttagggggtagtacttagtagtactactgggctataaattt 7398225  T

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Target: chr7; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 81 - 179
Target Start/End: Original strand, 36903599 - 36903696
Alignment:
Q  81 tagtacttaatagtactactgagctataaatttattatgagactcataccttggagagacgcagctctattgagtcttttgcacctcaaagtccggccc 179  Q
    ||||||||| |||||||||||  |||||| |||||| | ||||| ||||||||||||| | |||||| ||||||   |||||||| |||  ||||||||    
T  36903599 tagtacttagtagtactactggactataa-tttatttttagacttataccttggagaggcccagctcaattgagctctttgcaccccaagatccggccc 36903696  T

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Target: chr4 (Bit Score: 29; Significance: 0.0000003; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 46 - 109
Target Start/End: Complemental strand, 27111878 - 27111814
Alignment:
Q  46 tcagagagaaagagaataagaatctttttg-tgggatagtacttaatagtactactgagctataa 109  Q
    ||||||| |||||||||||| || |||||  |||| ||||||||| ||||||||||| |||||||    
T  27111878 tcagagataaagagaataaggatttttttaatggggtagtacttagtagtactactgggctataa 27111814  T

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Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 45 - 109
Target Start/End: Original strand, 36363129 - 36363196
Alignment:
Q  45 ttcagagagaaagagaataa-gaatcttttt--gtgggatagtacttaatagtactactgagctataa 109  Q
    |||| ||||||||||||||| |||| |||||  ||||| ||||||||| |||||||||||| ||||||    
T  36363129 ttcaaagagaaagagaataaagaatgttttttagtggggtagtacttagtagtactactgaactataa 36363196  T

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