View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4205_high_29 (Length: 223)
Name: NF4205_high_29
Description: NF4205
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4205_high_29 |
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Alignment Details
Target: chr5 (Bit Score: 162; Significance: 1e-86; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 162; E-Value: 1e-86
Query Start/End: Original strand, 1 - 206
Target Start/End: Original strand, 35970854 - 35971056
Alignment:
| Q |
1 |
actatgcaaaatgtgcatcaaaataaaacttggactagnnnnnnngggactaaatctgtggctgagattctagcaaagtggaaggaatacaatgagaaac |
100 |
Q |
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| T |
35970854 |
actatgcaaaatgtgcatcaaaataaaacttggactagaaaaaaagggactaaatctgtggctgagattctagcaaagtggaaggaatacaatgagaaac |
35970953 |
T |
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| Q |
101 |
tatataaagatatgacggtaagccgaagcggaaatcagggcaaaaggttcaaaagaaaaggtgtatgaaagggaaaggaggacctcaaaacccagagaat |
200 |
Q |
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| T |
35970954 |
tatataaag--atgacggtaagccgaagcggaaatcagggcaaaaggttc-aaagaaagggtgtatgaaagggaaaggaggacctcaaaacccagagaat |
35971050 |
T |
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| Q |
201 |
aaatat |
206 |
Q |
| |
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|||||| |
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| T |
35971051 |
aaatat |
35971056 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 49 - 202
Target Start/End: Complemental strand, 35978749 - 35978592
Alignment:
| Q |
49 |
actaaatctgtggctgagattctagcaaagtggaaggaatacaatgagaaactata------taaagatatgacggtaagccgaagcggaaatca-gggc |
141 |
Q |
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| T |
35978749 |
actaaatctgtggctgagactctagcaaaatggaaggaatacaatgagaagctttatgctggtaaag--atgatggtaaaccaaagcgtaaagcaccggc |
35978652 |
T |
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| Q |
142 |
aaaaggttcaaaagaaaaggtgtatgaaagggaaaggaggacctcaaaacccagagaataa |
202 |
Q |
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|||||||| ||||||| ||||||||||||| |||||||||||||||||| | |||||||| |
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| T |
35978651 |
taaaggttc-aaagaaagggtgtatgaaaggtaaaggaggacctcaaaactcggagaataa |
35978592 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 141 - 196
Target Start/End: Complemental strand, 35975625 - 35975571
Alignment:
| Q |
141 |
caaaaggttcaaaagaaaaggtgtatgaaagggaaaggaggacctcaaaacccaga |
196 |
Q |
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||||||||||||| |||| | |||||||||||||||||||||||||||||| |||| |
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| T |
35975625 |
caaaaggttcaaa-gaaaggatgtatgaaagggaaaggaggacctcaaaactcaga |
35975571 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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