View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF4205_high_4 (Length: 773)
Name: NF4205_high_4
Description: NF4205
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4205_high_4 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 484; Significance: 0; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 484; E-Value: 0
Query Start/End: Original strand, 169 - 750
Target Start/End: Complemental strand, 55484862 - 55484280
Alignment:
| Q |
169 |
gaaagtccgaggcgattgtcttggtggccttaccttaccggccatggcatatgcatgatgttcaatatctatattatgacgtaagagcaacatgataatt |
268 |
Q |
| |
|
||||||| ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
55484862 |
gaaagtctgaggcgattgtcttggtggccttaccttaccgggcatggcatatgcatgatgttcaatatctatattatgacgtaagagcaacatgataatt |
55484763 |
T |
|
| Q |
269 |
tagnnnnnnnnnt-ggtcatatcaatgcttgaaatcctagttgacgatcaaacattggtggggtaattgagttaagagttgaaacattgtgtcattggat |
367 |
Q |
| |
|
||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||| |
|
|
| T |
55484762 |
tagaagaaaaaaaaggtcatatcaatgcttgaaatcctagttgacgatcaaacattggtggggtaattgagtcaagagttgaaacattgtgtcatttgat |
55484663 |
T |
|
| Q |
368 |
ccagcattgtggatgataattaacaagtcgctttacggctttaagtcattgtaaaagcacttgaaaacacgtttgccttcttaatttgcttcctctaaac |
467 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
|
|
| T |
55484662 |
ccagcattgtggatgataattaacaagtcgctttccggctttaggtcattgtaaaagcacttgaaaacacgtttgtcttcttaatttgcttcctctaaac |
55484563 |
T |
|
| Q |
468 |
acattcatacattcagatacaaacacgagtggctaannnnnnnnggttaagtagcgtgacttggtaaacatgtatcaactcaatgaatacgtctcaaaca |
567 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
55484562 |
acattcatacattcagatacaaacacgagtggctaattttttttggttaagtagcgtgacttggtaaacatgtatcaactcaatgaatacgtctcaaaca |
55484463 |
T |
|
| Q |
568 |
aactttattgaaccatgcacatgattatggggggttatgttagtttttgttgggtccataatgttaatgtgtaaactctctgttggatattgtagactat |
667 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
|
|
| T |
55484462 |
aactttattgaaccatgcacatgattatggggggttatgttagtttttgttgggtccataatgttaatgtgtaaactctctgttggatattgtatactat |
55484363 |
T |
|
| Q |
668 |
gatggatagttttgatactttggaaccaactaaaataagaatagttagacaaataatcggcttcttcaccataaaataagcac |
750 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
|
|
| T |
55484362 |
gatggatagttttgatactttggaaccaactaaaataagaatagttagacaaataatcggcttcttcagcataaaataagcac |
55484280 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 53; E-Value: 5e-21
Query Start/End: Original strand, 8 - 60
Target Start/End: Complemental strand, 55485023 - 55484971
Alignment:
| Q |
8 |
acatacccattcattttattgcacatgagtaacaccacatcttgtgactcaac |
60 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
55485023 |
acatacccattcattttattgcacatgagtaacaccacatcttgtgactcaac |
55484971 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University