View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4205_high_5 (Length: 696)
Name: NF4205_high_5
Description: NF4205
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4205_high_5 |
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Alignment Details
Target: chr3 (Bit Score: 174; Significance: 3e-93; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 174; E-Value: 3e-93
Query Start/End: Original strand, 485 - 678
Target Start/End: Complemental strand, 17003446 - 17003253
Alignment:
| Q |
485 |
taatagccgcaaaatttatgcaaaatcgttatcttaagcaggtgttcttactggaaagtatactccacgaaatcctccatctgggcctcgaggtagaatt |
584 |
Q |
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| T |
17003446 |
taatagccgcaaaatttatgcaaaatcgttatcttaagcaggtgttcttactggaaagtatactccacgaaatcctccatctgggcctcgaggtagaatt |
17003347 |
T |
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| Q |
585 |
tatactccagaattcctaacaaaggtacaacttttctgaaatttccgtatccaatgaatgataccgatattacttggttcctcaagtgtttatt |
678 |
Q |
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| T |
17003346 |
tatactccagaattcttaacaaaggtacaacttttctgaaatttccgtatctaatgaattataccgatagtacttggttcctcaaatgtttatt |
17003253 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 61; E-Value: 8e-26
Query Start/End: Original strand, 18 - 94
Target Start/End: Complemental strand, 17003518 - 17003442
Alignment:
| Q |
18 |
ataataagcacccgagggagtattatggtagtgttactaataccttaaactatgacttttcatataagcacttaata |
94 |
Q |
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||||||| |||| ||||||||||||||||||||||| |||||||||||| ||||||||||||||||||||||||||| |
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| T |
17003518 |
ataataaacaccggagggagtattatggtagtgttattaataccttaaattatgacttttcatataagcacttaata |
17003442 |
T |
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