View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF4205_high_9 (Length: 491)
Name: NF4205_high_9
Description: NF4205
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4205_high_9 |
 | |
|
| [»] chr5 (20 HSPs) |
| |
|
| [»] chr4 (1 HSPs) |
| |
|
| [»] chr7 (1 HSPs) |
| |
|
| [»] chr1 (2 HSPs) |
| |
|
Alignment Details
Target: chr5 (Bit Score: 376; Significance: 0; HSPs: 20)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 376; E-Value: 0
Query Start/End: Original strand, 17 - 491
Target Start/End: Original strand, 30242371 - 30242845
Alignment:
| Q |
17 |
atttggagaacaaaaacatgaccagtttgtcaaaaagcacacaccacgttggttttgacttcaaagacttgttatcctttgataagaatgctttcaaaaa |
116 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| ||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
30242371 |
atttggagaacaaaaacatgaccagtttgtcaaaaagcacacaccacattggttttgactacaaagacttgttatcctttgataagaatgctttcaaaaa |
30242470 |
T |
|
| Q |
117 |
agttgaatccttgagaacattgtttcagttgagttattatgccnnnnnnnnncatgataacttcccaacatacctttctcttcgggttttatgcacatcc |
216 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
30242471 |
agttgaatccttgagaacattgtttcagttgagttattatgccaaaaaaaaacatgataacttcccaacatacctttctcttcgggttttatgcacatcc |
30242570 |
T |
|
| Q |
217 |
tttatccggatgccatcactagggagtttaattcatttaaggtatttggaacttcgttctcttgacatcaaaaatttgcctgactcaatttacaacctaa |
316 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
30242571 |
tttatccggatgccatcactagggagtttaattcatttaaggtatttggaacttcgttctcttgacatcaaaaatttgcctgactcaatttacaacctaa |
30242670 |
T |
|
| Q |
317 |
aaaagctggaaatcttgaaaataaaacactgtgataaacttagctggcttccgagacgcttggcttgtttacaaaatcttaggcatatagtcattgaaga |
416 |
Q |
| |
|
|||||||||||||||||||||||||||| ||| |||||| || || || || | || ||||||||| |||||||||||||| |||||||||||| |||| |
|
|
| T |
30242671 |
aaaagctggaaatcttgaaaataaaacattgtcgtaaactgagttgtctcccaaaacacttggcttgcttacaaaatcttagacatatagtcattaaaga |
30242770 |
T |
|
| Q |
417 |
atgttggtctttgtctctcatgtttcctaacattgaaaaattaacttgtctaagaacattaagtgtgtacattgt |
491 |
Q |
| |
|
|||| |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| ||||| |
|
|
| T |
30242771 |
atgtcggtctttgtctctcatgtttcctaacattggaaaattaacttgtctaagaacattaagtgtgtatattgt |
30242845 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 356; E-Value: 0
Query Start/End: Original strand, 17 - 491
Target Start/End: Original strand, 30677167 - 30677641
Alignment:
| Q |
17 |
atttggagaacaaaaacatgaccagtttgtcaaaaagcacacaccacgttggttttgacttcaaagacttgttatcctttgataagaatgctttcaaaaa |
116 |
Q |
| |
|
|||||||||| |||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
30677167 |
atttggagaaaaaaaacatgaccagtttgtcaaaaagcacacaccacattggttttgacctcaaagacttgttatcctttgataagaatgctttcaaaaa |
30677266 |
T |
|
| Q |
117 |
agttgaatccttgagaacattgtttcagttgagttattatgccnnnnnnnnncatgataacttcccaacatacctttctcttcgggttttatgcacatcc |
216 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| || |||||| |||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
30677267 |
agttgaatccttgagaacattgtttcagttgagttattattccaaaaaaaaacatgatttcttcccaacatacctttctcttcgggttttatgcacatcc |
30677366 |
T |
|
| Q |
217 |
tttatccggatgccatcactagggagtttaattcatttaaggtatttggaacttcgttctcttgacatcaaaaatttgcctgactcaatttacaacctaa |
316 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || | ||||||||||||||||||||||||| |
|
|
| T |
30677367 |
tttatccggatgccatcactagggagtttaattcatttaaggtatttggaacttcgttctcttgacataaatatgttgcctgactcaatttacaacctaa |
30677466 |
T |
|
| Q |
317 |
aaaagctggaaatcttgaaaataaaacactgtgataaacttagctggcttccgagacgcttggcttgtttacaaaatcttaggcatatagtcattgaaga |
416 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||| ||||||||||||||| | |
|
|
| T |
30677467 |
aaaagctggaaatcttgaaaataaaacactgtgataaacttagctggcttccaaaacgcttggcttgtttacaaaatcttagacatatagtcattgaata |
30677566 |
T |
|
| Q |
417 |
atgttggtctttgtctctcatgtttcctaacattgaaaaattaacttgtctaagaacattaagtgtgtacattgt |
491 |
Q |
| |
|
||| |||||||||| ||||||||||||||| ||||||||||||| ||||||||||||||||||||||||| |
|
|
| T |
30677567 |
ttgtgaatctttgtctcgtatgtttcctaacattagaaaattaacttgtttaagaacattaagtgtgtacattgt |
30677641 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 296; E-Value: 1e-166
Query Start/End: Original strand, 16 - 491
Target Start/End: Complemental strand, 29872282 - 29871816
Alignment:
| Q |
16 |
catttggagaacaaaaacatgaccagtttgtcaaaaagcacacaccacgttggttttgacttcaaagacttgttatcctttgataagaatgctttcaaaa |
115 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||| ||| | |||||| ||||| |||||||||||||| | ||||||||||||| |
|
|
| T |
29872282 |
catttggagaacaaaaacatgaccagtttgtcaaaaagcacacaccacattgttgttgactacaaag---tgttatcctttgatgaaaatgctttcaaaa |
29872186 |
T |
|
| Q |
116 |
aagttgaatccttgagaacattgtttcagttgagttattatgccnnnnnnnnncatgataacttcccaacatacctttctcttcgggttttatgcacatc |
215 |
Q |
| |
|
||||||||||||||||||||||||| |||||||| | | ||||||||||||||| |||| |||||||| |||||||||||| |||| |
|
|
| T |
29872185 |
aagttgaatccttgagaacattgtt------gagttattcttaccaaaaaaaacatgataacttcccagcatatctttctctccgggttttatgcgcatc |
29872092 |
T |
|
| Q |
216 |
ctttatccggatgccatcactagggagtttaattcatttaaggtatttggaacttcgttctcttgacatcaaaaatttgcctgactcaatttacaaccta |
315 |
Q |
| |
|
||||||||||||||||||||| |||||||||||||||||||||||||||| |||||||| ||||||||| ||||| |||||||||||||||||||| ||| |
|
|
| T |
29872091 |
ctttatccggatgccatcactggggagtttaattcatttaaggtatttgggacttcgttttcttgacataaaaaagttgcctgactcaatttacaatcta |
29871992 |
T |
|
| Q |
316 |
aaaaagctggaaatcttgaaaataaaacactgtgataaacttagctggcttccgagacgcttggcttgtttacaaaatcttaggcatatagtcattgaag |
415 |
Q |
| |
|
||||||||||||||||||||||||||| ||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |||||||||||||||| |
|
|
| T |
29871991 |
aaaaagctggaaatcttgaaaataaaatactgtgataaacttagctggcttccgaaacgcttggcttgtttacaaaatcttagacatatagtcattgaag |
29871892 |
T |
|
| Q |
416 |
aatgttggtctttgtctctcatgtttcctaacattgaaaaattaacttgtctaagaacattaagtgtgtacattgt |
491 |
Q |
| |
|
||||| | ||||||||| |||||||||||||||| ||||||||||||| ||||||||||||||||||||||||| |
|
|
| T |
29871891 |
aatgtcgatctttgtctagtatgtttcctaacattggaaaattaacttgtttaagaacattaagtgtgtacattgt |
29871816 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 225; E-Value: 1e-124
Query Start/End: Original strand, 17 - 491
Target Start/End: Complemental strand, 30060476 - 30059999
Alignment:
| Q |
17 |
atttggagaacaaaaacatgaccagtttgtcaaaaagcacacaccacgttggttttgacttcaaagacttgttatcctttgataagaatgctttcaaaaa |
116 |
Q |
| |
|
|||||||||| |||| |||| |||||||||||||||||||||||| || |||||||| ||||||| ||||||||| || ||| |||||||||||| |
|
|
| T |
30060476 |
atttggagaatgcaaacttgactagtttgtcaaaaagcacacaccacattagttttgacaataaagactcgttatccttcgacaaggatgctttcaaaat |
30060377 |
T |
|
| Q |
117 |
agttgaatccttgagaacattgtttcagttg---agttattatgccnnnnnnnnncatgataacttcccaacatacctttctcttcgggttttatgcaca |
213 |
Q |
| |
|
||||||||||||| |||||| |||| |||| ||| || | | |||||| ||||||||||| |||||||||||||||||||||||| | |
|
|
| T |
30060376 |
agttgaatccttgcgaacatggtttgagttttgtagtactttttcaaaagaaaaacatgattacttcccaacaaacctttctcttcgggttttatgcata |
30060277 |
T |
|
| Q |
214 |
tcctttatccggatgccatcactagggagtttaattcatttaaggtatttggaacttcgttctcttgacatcaaaaatttgcctgactcaatttacaacc |
313 |
Q |
| |
|
|||||||||| ||||| |||||| ||||||||||||||||||||||||||||||||||||||||| || ||||| ||||||||||||||||||||| |
|
|
| T |
30060276 |
acctttatccgagagccattactaggtagtttaattcatttaaggtatttggaacttcgttctcttgatataaaaaagttgcctgactcaatttacaact |
30060177 |
T |
|
| Q |
314 |
taaaaaagctggaaatcttgaaaataaaacactgtgataaacttagctggcttccgagacgcttggcttgtttacaaaatcttaggcatatagtcattga |
413 |
Q |
| |
|
|| |||| ||||||||||||||||||||| ||||| |||||| || || || || | |||||||||||| |||||||||||||| |||||||||||||| |
|
|
| T |
30060176 |
tacaaaaactggaaatcttgaaaataaaagactgtcgtaaactgagttgtctcccaaaacgcttggcttgcttacaaaatcttagacatatagtcattga |
30060077 |
T |
|
| Q |
414 |
agaatgttggtctttgtctctcatgtttcctaacattgaaaaattaacttgtctaagaacattaagtgtgtacattgt |
491 |
Q |
| |
|
|| |||| |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
30060076 |
agtatgtcggtctttgtctctcatgtttcctaacattggaaaattaacttgtctaagaacattaagtgtgtacattgt |
30059999 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 220; E-Value: 1e-121
Query Start/End: Original strand, 17 - 491
Target Start/End: Complemental strand, 30749750 - 30749273
Alignment:
| Q |
17 |
atttggagaacaaaaacatgaccagtttgtcaaaaagcacacaccacgttggttttgacttcaaagacttgttatcctttgataagaatgctttcaaaaa |
116 |
Q |
| |
|
|||||||||| |||| |||| |||||||| |||||||||||||| || |||||||| || |||| ||||||||| || ||| |||||||||||| |
|
|
| T |
30749750 |
atttggagaatgcaaacttgactagtttgtcgaaaagcacacaccatattagttttgacaataacgactcgttatccttcgacaaggatgctttcaaaat |
30749651 |
T |
|
| Q |
117 |
agttgaatccttgagaacattgtttcagttgagt--tattatgccnnnnnnnnn-catgataacttcccaacatacctttctcttcgggttttatgcaca |
213 |
Q |
| |
|
||||||||||||| |||||| |||| ||||| || |||| || | |||||| ||||||||||| |||||||||||||||||||| ||||| |
|
|
| T |
30749650 |
agttgaatccttgcgaacatggtttgagttgtgtagtattttgtcaaaagaaaaacatgattacttcccaacaaacctttctcttcgggttttacgcaca |
30749551 |
T |
|
| Q |
214 |
tcctttatccggatgccatcactagggagtttaattcatttaaggtatttggaacttcgttctcttgacatcaaaaatttgcctgactcaatttacaacc |
313 |
Q |
| |
|
|||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||| |||||| |||||||||||||| |
|
|
| T |
30749550 |
tcctttatccagatgccatcactagggagtttaattcatttaaggtatttggaacttcgttctcttgatataaaaaagttgcctaactcaatttacaact |
30749451 |
T |
|
| Q |
314 |
taaaaaagctggaaatcttgaaaataaaacactgtgataaacttagctggcttccgagacgcttggcttgtttacaaaatcttaggcatatagtcattga |
413 |
Q |
| |
|
|| |||| |||||||||||||||||||||| |||| |||||| || || || || | |||||||||||| |||||||||||||| |||||||||||||| |
|
|
| T |
30749450 |
tacaaaaactggaaatcttgaaaataaaacgctgtcgtaaactgagttgtctcccaaaacgcttggcttgcttacaaaatcttagacatatagtcattga |
30749351 |
T |
|
| Q |
414 |
agaatgttggtctttgtctctcatgtttcctaacattgaaaaattaacttgtctaagaacattaagtgtgtacattgt |
491 |
Q |
| |
|
|||| |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
30749350 |
cagatgtaaatctttgtctctcatgtttcctaacattggaaaattaacttgtctaagaacattaagtgtgtacattgt |
30749273 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 181; E-Value: 1e-97
Query Start/End: Original strand, 239 - 491
Target Start/End: Original strand, 30713643 - 30713895
Alignment:
| Q |
239 |
ggagtttaattcatttaaggtatttggaacttcgttctcttgacatcaaaaatttgcctgactcaatttacaacctaaaaaagctggaaatcttgaaaat |
338 |
Q |
| |
|
||||||||||||||||||||||||||||| ||| |||||||| ||| ||||| ||||||||||||||||||||| || |||| ||||||||||||||||| |
|
|
| T |
30713643 |
ggagtttaattcatttaaggtatttggaaattcattctcttggcataaaaaagttgcctgactcaatttacaacttacaaaaactggaaatcttgaaaat |
30713742 |
T |
|
| Q |
339 |
aaaacactgtgataaacttagctggcttccgagacgcttggcttgtttacaaaatcttaggcatatagtcattgaagaatgttggtctttgtctctcatg |
438 |
Q |
| |
|
|||||||||| |||||||||| || ||||||| ||||||||||||||||||||||||||| ||||||||||||||||||||| | |||||||||| ||| |
|
|
| T |
30713743 |
aaaacactgtaataaacttagttgccttccgaaacgcttggcttgtttacaaaatcttagacatatagtcattgaagaatgtcgatctttgtctcgaatg |
30713842 |
T |
|
| Q |
439 |
tttcctaacattgaaaaattaacttgtctaagaacattaagtgtgtacattgt |
491 |
Q |
| |
|
||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
30713843 |
tttcctaacattggaaaattaacttgtctaagaacattaagtgtgtacattgt |
30713895 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #7
Raw Score: 172; E-Value: 3e-92
Query Start/End: Original strand, 17 - 491
Target Start/End: Complemental strand, 30206629 - 30206155
Alignment:
| Q |
17 |
atttggagaacaaaaacatgaccagtttgtcaaaaagcacacaccacgttggttttgacttcaaagacttgttatcctttgataagaatgctttcaaaaa |
116 |
Q |
| |
|
|||||||||| ||||||||| | |||||||||||||||||||||| | ||||| ||| | ||| ||||||| || || || ||| |||| || |
|
|
| T |
30206629 |
atttggagaattcaaacatgactactttgtcaaaaagcacacaccacataagttttcactatgatgacgtgttatcattcgacgagggtgccttcaggaa |
30206530 |
T |
|
| Q |
117 |
agttgaatccttgagaacattgtttcagttgagttattatgccnnnnnnnnncatgataacttcccaacatacctttctcttcgggttttatgcacatcc |
216 |
Q |
| |
|
|||||||||||||||||||||||||||||||| | |||| || |||||| ||| |||||| ||| ||| ||||||||||||||||||||| |
|
|
| T |
30206529 |
agttgaatccttgagaacattgtttcagttgaatcattacaccaaaacaaaacatgattactcgccaacaaaccgttcccttcgggttttatgcacatcc |
30206430 |
T |
|
| Q |
217 |
tttatccggatgccatcactagggagtttaattcatttaaggtatttggaacttcgttctcttgacatcaaaaatttgcctgactcaatttacaacctaa |
316 |
Q |
| |
|
||||||| | | ||||||||||||||||||||||||||||||||||||||||||||||||||||| || |||| ||||| ||||||||||||||| || |
|
|
| T |
30206429 |
tttatccaggtaccatcactagggagtttaattcatttaaggtatttggaacttcgttctcttgaaataaaaatgttgccggactcaatttacaacttac |
30206330 |
T |
|
| Q |
317 |
aaaagctggaaatcttgaaaataaaacactgtgataaacttagctggcttccgagacgcttggcttgtttacaaaatcttaggcatatagtcattgaaga |
416 |
Q |
| |
|
|||| ||||||||||||||||||||| | ||| | ||||||||||| ||||||| | |||||||||||||||| ||||| || ||| | |||||| |||| |
|
|
| T |
30206329 |
aaaaactggaaatcttgaaaataaaagattgtcaaaaacttagctgtcttccgaaaggcttggcttgtttacagaatctcagacatcttgtcattaaaga |
30206230 |
T |
|
| Q |
417 |
atgttggtctttgtctctcatgtttcctaacattgaaaaattaacttgtctaagaacattaagtgtgtacattgt |
491 |
Q |
| |
|
|| || |||| || ||||||||| |||||| ||||||||| ||||||||||||||||||||||||||||| |
|
|
| T |
30206229 |
ttgccattcattgtttcacatgtttccatacattggaaaattaacctgtctaagaacattaagtgtgtacattgt |
30206155 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #8
Raw Score: 165; E-Value: 5e-88
Query Start/End: Original strand, 239 - 491
Target Start/End: Original strand, 30338746 - 30338998
Alignment:
| Q |
239 |
ggagtttaattcatttaaggtatttggaacttcgttctcttgacatcaaaaatttgcctgactcaatttacaacctaaaaaagctggaaatcttgaaaat |
338 |
Q |
| |
|
|||||||||||||||||||||||||||||||| || ||||||||| |||| |||||| |||||||||||||| || |||| ||||||||||||||||| |
|
|
| T |
30338746 |
ggagtttaattcatttaaggtatttggaacttacttatcttgacatagaaaagttgcctaactcaatttacaacttacaaaaactggaaatcttgaaaat |
30338845 |
T |
|
| Q |
339 |
aaaacactgtgataaacttagctggcttccgagacgcttggcttgtttacaaaatcttaggcatatagtcattgaagaatgttggtctttgtctctcatg |
438 |
Q |
| |
|
||||| ||||||||||| || || ||||| | |||||||||||| |||||||||||||||||||||||||||||||||||| ||||||||||||| ||| |
|
|
| T |
30338846 |
aaaacgttgtgataaactgagttgtcttccaaaacgcttggcttgcttacaaaatcttaggcatatagtcattgaagaatgtcggtctttgtctctaatg |
30338945 |
T |
|
| Q |
439 |
tttcctaacattgaaaaattaacttgtctaagaacattaagtgtgtacattgt |
491 |
Q |
| |
|
||||||||||||| ||||||| ||||||||||||||||||||||||||||||| |
|
|
| T |
30338946 |
tttcctaacattggaaaattatcttgtctaagaacattaagtgtgtacattgt |
30338998 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #9
Raw Score: 153; E-Value: 7e-81
Query Start/End: Original strand, 239 - 491
Target Start/End: Complemental strand, 30483286 - 30483034
Alignment:
| Q |
239 |
ggagtttaattcatttaaggtatttggaacttcgttctcttgacatcaaaaatttgcctgactcaatttacaacctaaaaaagctggaaatcttgaaaat |
338 |
Q |
| |
|
|||||||||||||||||||||||||||||||| || ||||||||| |||| |||||| |||||||||||||| || |||| ||||||||||||||||| |
|
|
| T |
30483286 |
ggagtttaattcatttaaggtatttggaacttatttatcttgacatagaaaagttgcctaactcaatttacaacttacaaaaactggaaatcttgaaaat |
30483187 |
T |
|
| Q |
339 |
aaaacactgtgataaacttagctggcttccgagacgcttggcttgtttacaaaatcttaggcatatagtcattgaagaatgttggtctttgtctctcatg |
438 |
Q |
| |
|
|||| ||||| ||| || || || || || | |||||||||||| |||||||||||||||||||||||||||||||||||| |||||||||||| ||| |
|
|
| T |
30483186 |
aaaagactgtcgtaatctgagttgtctcccaaaacgcttggcttgcttacaaaatcttaggcatatagtcattgaagaatgtcggtctttgtctcaaatg |
30483087 |
T |
|
| Q |
439 |
tttcctaacattgaaaaattaacttgtctaagaacattaagtgtgtacattgt |
491 |
Q |
| |
|
||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
30483086 |
tttcctaacattggaaaattaacttgtctaagaacattaagtgtgtacattgt |
30483034 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #10
Raw Score: 148; E-Value: 7e-78
Query Start/End: Original strand, 176 - 491
Target Start/End: Complemental strand, 30400022 - 30399707
Alignment:
| Q |
176 |
acttcccaacatacctttctcttcgggttttatgcacatcctttatccggatgccatcactagggagtttaattcatttaaggtatttggaacttcgttc |
275 |
Q |
| |
|
||||||||||| ||| |||||||||||||||||||||| ||||||||||| ||||| |||||| |||||||||||||||||||||||||| |||| || |
|
|
| T |
30400022 |
acttcccaacagacccttctcttcgggttttatgcacaacctttatccgggggccattactaggtagtttaattcatttaaggtatttggagcttcttta |
30399923 |
T |
|
| Q |
276 |
tcttgacatcaaaaatttgcctgactcaatttacaacctaaaaaagctggaaatcttgaaaataaaacactgtgataaacttagctggcttccgagacgc |
375 |
Q |
| |
|
||||||||| || | ||||||||||||||||||||| || |||| ||||||| ||||||||||||||| |||| | |||| | || || || | |||| |
|
|
| T |
30399922 |
tcttgacatacaagagttgcctgactcaatttacaacttacaaaaactggaaaccttgaaaataaaacattgtggtgaactgatttgtctcccaaaacgc |
30399823 |
T |
|
| Q |
376 |
ttggcttgtttacaaaatcttaggcatatagtcattgaagaatgttggtctttgtctctcatgtttcctaacattgaaaaattaacttgtctaagaacat |
475 |
Q |
| |
|
||||||| |||||||||||||| |||||||| |||||| | ||| |||||||||| |||||||||||||||| |||||||||| |||||| ||||| |
|
|
| T |
30399822 |
ttggctttcttacaaaatcttagacatatagttattgaatattgtatatctttgtctcgaatgtttcctaacattggaaaattaactagtctaaaaacat |
30399723 |
T |
|
| Q |
476 |
taagtgtgtacattgt |
491 |
Q |
| |
|
|||||||||||||||| |
|
|
| T |
30399722 |
taagtgtgtacattgt |
30399707 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #11
Raw Score: 137; E-Value: 2e-71
Query Start/End: Original strand, 231 - 491
Target Start/End: Complemental strand, 29853201 - 29852941
Alignment:
| Q |
231 |
atcactagggagtttaattcatttaaggtatttggaacttcgttctcttgacatcaaaaatttgcctgactcaatttacaacctaaaaaagctggaaatc |
330 |
Q |
| |
|
|||||||| |||||||||||||||||||||||||||||||||||||||||||| |||| ||||| ||||||||||||||| || |||| |||||||| |
|
|
| T |
29853201 |
atcactagaaagtttaattcatttaaggtatttggaacttcgttctcttgacataaaaatgttgccggactcaatttacaacttacaaaaactggaaata |
29853102 |
T |
|
| Q |
331 |
ttgaaaataaaacactgtgataaacttagctggcttccgagacgcttggcttgtttacaaaatcttaggcatatagtcattgaagaatgttggtctttgt |
430 |
Q |
| |
|
|||||||||||| |||| | | |||| || || || |||| || ||||||||| |||||||||||||| |||||||||||| ||| |||| | ||||||| |
|
|
| T |
29853101 |
ttgaaaataaaagactgcggtgaactgagttgtctcccgaaacacttggcttgcttacaaaatcttagacatatagtcattaaaggatgtcgatctttgt |
29853002 |
T |
|
| Q |
431 |
ctctcatgtttcctaacattgaaaaattaacttgtctaagaacattaagtgtgtacattgt |
491 |
Q |
| |
|
||||||||||||||||||||| |||||| ||||||||||||||||||| |||||||||| |
|
|
| T |
29853001 |
ctctcatgtttcctaacattggcaaattatcttgtctaagaacattaagcatgtacattgt |
29852941 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #12
Raw Score: 129; E-Value: 1e-66
Query Start/End: Original strand, 239 - 491
Target Start/End: Complemental strand, 30435704 - 30435452
Alignment:
| Q |
239 |
ggagtttaattcatttaaggtatttggaacttcgttctcttgacatcaaaaatttgcctgactcaatttacaacctaaaaaagctggaaatcttgaaaat |
338 |
Q |
| |
|
|||||||||||||||||||||||||||||||| |||||||||| || ||||| |||||| |||||||||||||| || |||| ||||||||||||||||| |
|
|
| T |
30435704 |
ggagtttaattcatttaaggtatttggaactttgttctcttgatataaaaaagttgcctaactcaatttacaacttacaaaaactggaaatcttgaaaat |
30435605 |
T |
|
| Q |
339 |
aaaacactgtgataaacttagctggcttccgagacgcttggcttgtttacaaaatcttaggcatatagtcattgaagaatgttggtctttgtctctcatg |
438 |
Q |
| |
|
|||| | ||| | |||| || || || || | |||||||| ||| |||||||||||||| |||||||||||||||| |||| | ||||| | || ||| |
|
|
| T |
30435604 |
aaaatattgtcgtgaactgagttgtctcccaaaacgcttggtttgcttacaaaatcttagacatatagtcattgaaggatgtggatctttatttcgaatg |
30435505 |
T |
|
| Q |
439 |
tttcctaacattgaaaaattaacttgtctaagaacattaagtgtgtacattgt |
491 |
Q |
| |
|
||||| ||||||| ||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
30435504 |
tttcccaacattggaaaattaacttgtctaagaacattaagtgtgtacattgt |
30435452 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #13
Raw Score: 64; E-Value: 9e-28
Query Start/End: Original strand, 18 - 141
Target Start/End: Original strand, 30338522 - 30338645
Alignment:
| Q |
18 |
tttggagaacaaaaacatgaccagtttgtcaaaaagcacacaccacgttggttttgacttcaaagacttgttatcctttgataagaatgctttcaaaaaa |
117 |
Q |
| |
|
||||||||| ||||||| ||| | |||||||||||||||||||||| ||||||||||| ||| |||| |||||||| ||| | ||||||||||||||| |
|
|
| T |
30338522 |
tttggagaataaaaacacgactaatttgtcaaaaagcacacaccacattggttttgacagcaacaactttttatccttcgatgaaaatgctttcaaaaaa |
30338621 |
T |
|
| Q |
118 |
gttgaatccttgagaacattgttt |
141 |
Q |
| |
|
|||||||||||| |||| |||||| |
|
|
| T |
30338622 |
gttgaatccttgcgaactttgttt |
30338645 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #14
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 18 - 141
Target Start/End: Complemental strand, 30483510 - 30483387
Alignment:
| Q |
18 |
tttggagaacaaaaacatgaccagtttgtcaaaaagcacacaccacgttggttttgacttcaaagacttgttatcctttgataagaatgctttcaaaaaa |
117 |
Q |
| |
|
||||||||| ||||||| ||| | |||||||||||||||||||||| |||||||| || ||| | || |||||||| ||| | ||||||||||||||| |
|
|
| T |
30483510 |
tttggagaataaaaacacgactaatttgtcaaaaagcacacaccacattggttttaacagcaagaaatttttatccttcgatgaaaatgctttcaaaaaa |
30483411 |
T |
|
| Q |
118 |
gttgaatccttgagaacattgttt |
141 |
Q |
| |
|
|||||||||||| ||||||||||| |
|
|
| T |
30483410 |
gttgaatccttgcgaacattgttt |
30483387 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #15
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 192 - 344
Target Start/End: Original strand, 17418334 - 17418486
Alignment:
| Q |
192 |
ttctcttcgggttttatgcacatcctttatccggatgccatcactagggagtttaattcatttaaggtatttggaacttcgttctcttgacatcaaaaat |
291 |
Q |
| |
|
|||||||||||||||||||||||||| | ||| | | || ||||||| |||||||||||||||| ||||||| |||||||||||| | |||| || | | |
|
|
| T |
17418334 |
ttctcttcgggttttatgcacatcctctctccaggtaccctcactagagagtttaattcatttatggtatttagaacttcgttctgcttacataaacatt |
17418433 |
T |
|
| Q |
292 |
ttgcctgactcaatttacaacctaaaaaagctggaaatcttgaaaataaaaca |
344 |
Q |
| |
|
|| || |||| ||||| |||| || |||| || ||||||||||| ||||||| |
|
|
| T |
17418434 |
ttaccggactgaatttgcaacttacaaaaactagaaatcttgaatgtaaaaca |
17418486 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #16
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 104 - 146
Target Start/End: Original strand, 17418249 - 17418291
Alignment:
| Q |
104 |
atgctttcaaaaaagttgaatccttgagaacattgtttcagtt |
146 |
Q |
| |
|
|||| ||||||||||||||||||||| |||||||||||||||| |
|
|
| T |
17418249 |
atgccttcaaaaaagttgaatccttgcgaacattgtttcagtt |
17418291 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #17
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 381 - 459
Target Start/End: Complemental strand, 17982643 - 17982565
Alignment:
| Q |
381 |
ttgtttacaaaatcttaggcatatagtcattgaagaatgttggtctttgtctctcatgtttcctaacattgaaaaatta |
459 |
Q |
| |
|
|||||||||||||||||| ||| ||||||||||| |||| || ||||||| |||||||||| |||||| ||||||| |
|
|
| T |
17982643 |
ttgtttacaaaatcttagacatttagtcattgaacgttgttattcgttgtctcacatgtttcctcacattggaaaatta |
17982565 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #18
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 17 - 146
Target Start/End: Complemental strand, 30400181 - 30400052
Alignment:
| Q |
17 |
atttggagaacaaaaacatgaccagtttgtcaaaaagcacacaccacgttggttttgacttcaaagacttgttatcctttgataagaatgctttcaaaaa |
116 |
Q |
| |
|
|||||||||| ||||||||| |||||||||||||||||||||||| | ||||| ||| | | |||||||| || ||| || ||| |||| ||| |
|
|
| T |
30400181 |
atttggagaatgcaaacatgactagtttgtcaaaaagcacacaccacataagttttaactctgataatttgttatcattcgatgagggtgccttcagaaa |
30400082 |
T |
|
| Q |
117 |
agttgaatccttgagaacattgtttcagtt |
146 |
Q |
| |
|
||||||||||||| |||||| |||| |||| |
|
|
| T |
30400081 |
agttgaatccttgcgaacatggtttgagtt |
30400052 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #19
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 17 - 141
Target Start/End: Complemental strand, 30435923 - 30435799
Alignment:
| Q |
17 |
atttggagaacaaaaacatgaccagtttgtcaaaaagcacacaccacgttggttttgacttcaaagacttgttatcctttgataagaatgctttcaaaaa |
116 |
Q |
| |
|
|||||||||| ||||||||| | |||| |||||| |||||||||| | ||||| ||| || | |||||||| || ||| || ||| |||||||| |
|
|
| T |
30435923 |
atttggagaatgcaaacatgactaatttgacaaaaaacacacaccacataagttttaactctgaaaatttgttatcattcgatgagggtgccttcaaaaa |
30435824 |
T |
|
| Q |
117 |
agttgaatccttgagaacattgttt |
141 |
Q |
| |
|
|||||||||||| ||||||||||| |
|
|
| T |
30435823 |
agttgaatccttacgaacattgttt |
30435799 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #20
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 17 - 141
Target Start/End: Original strand, 30713424 - 30713548
Alignment:
| Q |
17 |
atttggagaacaaaaacatgaccagtttgtcaaaaagcacacaccacgttggttttgacttcaaagacttgttatcctttgataagaatgctttcaaaaa |
116 |
Q |
| |
|
|||||||||| ||||||||| | |||| |||||| |||||||||| | ||||| ||| || | |||||||| || ||| || ||| |||||||| |
|
|
| T |
30713424 |
atttggagaatgcaaacatgactaatttgacaaaaaacacacaccacataagttttcactctgaaaaattgttatcattcgatgagggtgccttcaaaaa |
30713523 |
T |
|
| Q |
117 |
agttgaatccttgagaacattgttt |
141 |
Q |
| |
|
|||||||||||| ||||||||||| |
|
|
| T |
30713524 |
agttgaatccttacgaacattgttt |
30713548 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 169; Significance: 2e-90; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 169; E-Value: 2e-90
Query Start/End: Original strand, 17 - 491
Target Start/End: Original strand, 20296581 - 20297064
Alignment:
| Q |
17 |
atttggagaacaaaaacatgaccagtttgtcaaaaagcacacaccacgttggttttgacttcaaagacttgttatcctttgataagaatgctttcaaaaa |
116 |
Q |
| |
|
|||||||| | |||||| | || | ||||||| ||||||||||||| |||||||||||| || ||||||||||||| | | ||| ||| |||||| | |
|
|
| T |
20296581 |
atttggaggataaaaacgttactaatttgtcacgaagcacacaccacattggttttgactacacagacttgttatccatcaacaagggtgccttcaaaga |
20296680 |
T |
|
| Q |
117 |
agttgaatccttgagaacattgtttcagttgagttattatg---------ccnnnnnnnnncatgataacttcccaacatacctttctcttcgggtttta |
207 |
Q |
| |
|
||||||||||||| |||||||||||||||||||| ||||| || |||||| || |||||||| ||||||||||||||||||| |
|
|
| T |
20296681 |
agttgaatccttgcgaacattgtttcagttgagtgattatcatcattattccaaaatagatcatgattacatcccaacaaacctttctcttcgggttttg |
20296780 |
T |
|
| Q |
208 |
tgcacatcctttatccggatgccatcactagggagtttaattcatttaaggtatttggaacttcgttctcttgacatcaaaaatttgcctgactcaattt |
307 |
Q |
| |
|
|||||||||||| || ||| |||||||| ||||||||||||||||||||||||||| |||||| ||||| ||| ||| | |||||||||||||||| |
|
|
| T |
20296781 |
cgcacatcctttacccatgtgcgatcactagagagtttaattcatttaaggtatttggagcttcgtaatcttgtcataaaagagttgcctgactcaattt |
20296880 |
T |
|
| Q |
308 |
acaacctaaaaaagctggaaatcttgaaaataaaacactgtgataaacttagctggcttccgagacgcttggcttgtttacaaaatcttaggcatatagt |
407 |
Q |
| |
|
||||| | |||| |||||| ||||||||||| || ||||||||| || || || ||||||| || |||||| || ||||||||||||| |||||||| |
|
|
| T |
20296881 |
acaacttgcaaaaattggaaaccttgaaaataatacgctgtgataatctgagttgtcttccgaaacacttggcctgcctacaaaatcttagacatatagt |
20296980 |
T |
|
| Q |
408 |
cattgaagaatgttggtctttgtctctcatgtttcctaacattgaaaaattaacttgtctaagaacattaagtgtgtacattgt |
491 |
Q |
| |
|
||||||||| |||||||||||||||| |||||||||| ||||| ||||||| ||||||||||||||||||||||||||||||| |
|
|
| T |
20296981 |
cattgaagattgttggtctttgtctcgaatgtttcctagcattggaaaattatcttgtctaagaacattaagtgtgtacattgt |
20297064 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 145; Significance: 4e-76; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 145; E-Value: 4e-76
Query Start/End: Original strand, 109 - 491
Target Start/End: Complemental strand, 26707350 - 26706974
Alignment:
| Q |
109 |
ttcaaaaaagttgaatccttgagaacattgtttcagttgagttattatgccnnnnnnnnncatgataacttcccaacatacctttctcttcgggttttat |
208 |
Q |
| |
|
||||||||||||||||||||| ||||||||||| | |||| ||||| || |||||| |||||||| | ||| |||||||||||||||| |
|
|
| T |
26707350 |
ttcaaaaaagttgaatccttgcgaacattgtttgacttgaagaattattccccaaaaaaccatgatcacttcccattaaaccgctctcttcgggttttat |
26707251 |
T |
|
| Q |
209 |
gcacatcctttatccggatgccatcactagggagtttaattcatttaaggtatttggaacttcgttctcttgacatcaaaaatttgcctgactcaattta |
308 |
Q |
| |
|
||||||| || | | |||||||||||| ||||||||||||||||||||||||||||||| |||||| || ||||| || ||| |||||||||| |
|
|
| T |
26707250 |
gcacatc------ccaggtattatcactagggagcttaattcatttaaggtatttggaacttcgttatcttgatataaaaaagtttcctaactcaattta |
26707157 |
T |
|
| Q |
309 |
caacctaaaaaagctggaaatcttgaaaataaaacactgtgataaacttagctggcttccgagacgcttggcttgtttacaaaatcttaggcatatagtc |
408 |
Q |
| |
|
|||| ||||||| ||||||||||||||||||||| | |||||||| || || || ||||| | || |||| ||||||||||||||||||| ||||||||| |
|
|
| T |
26707156 |
caacttaaaaaaactggaaatcttgaaaataaaagattgtgataatctgagttgtcttcctaaacacttgacttgtttacaaaatcttagacatatagtc |
26707057 |
T |
|
| Q |
409 |
attgaagaatgttggtctttgtctctcatgtttcctaacattgaaaaattaacttgtctaagaacattaagtgtgtacattgt |
491 |
Q |
| |
|
||||||| |||| | |||||||||| |||||||||| ||||| ||||||| | ||||||||||||||||||||||||||||| |
|
|
| T |
26707056 |
attgaaggatgtggatctttgtctcgaatgtttcctagcattggaaaattatcctgtctaagaacattaagtgtgtacattgt |
26706974 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 87; Significance: 2e-41; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 87; E-Value: 2e-41
Query Start/End: Original strand, 169 - 411
Target Start/End: Original strand, 25294020 - 25294262
Alignment:
| Q |
169 |
catgataacttcccaacatacctttctcttcgggttttatgcacatcctttatccggatgccatcactagggagtttaattcatttaaggtatttggaac |
268 |
Q |
| |
|
|||||| ||||| ||||| ||| || |||||| |||||||||||||||||||||| | |||||| |||| || |||||||||||||||||||||| || |
|
|
| T |
25294020 |
catgatcacttctcaacaaaccgttgtcttcgagttttatgcacatcctttatccaagtaccatcaataggaagcttaattcatttaaggtatttggcac |
25294119 |
T |
|
| Q |
269 |
ttcgttctcttgacatcaaaaatttgcctgactcaatttacaacctaaaaaagctggaaatcttgaaaataaaacactgtgataaacttagctggcttcc |
368 |
Q |
| |
|
|| |||||||||||| |||| ||| ||||||||||||||||| |||||| ||||||||||| ||||||||| | | ||||||||| || | ||||| |
|
|
| T |
25294120 |
tttattctcttgacataaaaatgttgtctgactcaatttacaacttaaaaatactggaaatcttaaaaataaaatattatgataaactgagtggtcttcc |
25294219 |
T |
|
| Q |
369 |
gagacgcttggcttgtttacaaaatcttaggcatatagtcatt |
411 |
Q |
| |
|
| || |||||||| |||||||||||||| ||| || ||||| |
|
|
| T |
25294220 |
aaaacatttggcttgcttacaaaatcttagacatctaatcatt |
25294262 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 37; Significance: 0.00000000001; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 375 - 491
Target Start/End: Complemental strand, 7099170 - 7099054
Alignment:
| Q |
375 |
cttggcttgtttacaaaatcttaggcatatagtcattgaagaatgttggtctttgtctctcatgtttcctaacattgaaaaattaacttgtctaagaaca |
474 |
Q |
| |
|
|||| |||| |||||||||||||| ||| || ||||||||| ||| || ||||||| |||||||||| |||||| ||||||| |||| ||||||| |
|
|
| T |
7099170 |
cttgtcttgcttacaaaatcttagacatttaatcattgaaggttgtaattcattgtctcgcatgtttcctcacattggaaaattatcttgcttaagaacc |
7099071 |
T |
|
| Q |
475 |
ttaagtgtgtacattgt |
491 |
Q |
| |
|
|||||||| || ||||| |
|
|
| T |
7099070 |
ttaagtgtttatattgt |
7099054 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 375 - 491
Target Start/End: Original strand, 7582076 - 7582192
Alignment:
| Q |
375 |
cttggcttgtttacaaaatcttaggcatatagtcattgaagaatgttggtctttgtctctcatgtttcctaacattgaaaaattaacttgtctaagaaca |
474 |
Q |
| |
|
|||| |||| |||||||||||||| ||| ||||||||||||| ||| | ||||||| |||||||| | | ||| ||||||| |||| |||||||| |
|
|
| T |
7582076 |
cttgtcttgcttacaaaatcttagacatttagtcattgaagattgtcatttgttgtctcgcatgtttcgtcatgttggaaaattatcttgcttaagaaca |
7582175 |
T |
|
| Q |
475 |
ttaagtgtgtacattgt |
491 |
Q |
| |
|
|||||||| || ||||| |
|
|
| T |
7582176 |
ttaagtgtttatattgt |
7582192 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University