View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF4205_low_10 (Length: 547)
Name: NF4205_low_10
Description: NF4205
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4205_low_10 |
 | |
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Alignment Details
Target: chr4 (Bit Score: 507; Significance: 0; HSPs: 6)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 507; E-Value: 0
Query Start/End: Original strand, 17 - 539
Target Start/End: Original strand, 36206126 - 36206648
Alignment:
| Q |
17 |
aatgatatctcttcttgtacagtgttctcaatgtcatcacctcgactaaatctaaacacctttaattgttcaagactttctatcacttccaaaggaatgg |
116 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36206126 |
aatgatatctcttcttgtacagtgttctcaatgtcatcacctcgactaaatctaaacacctttaattgttcaagactttctatcacttccaaaggaatgg |
36206225 |
T |
|
| Q |
117 |
ggttactgctggtgctggtgcaaatcatgccatccataagaaataccctcaactttttcaacttcttcaatgcaataggcaactcaattacttttgatcc |
216 |
Q |
| |
|
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
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|
| T |
36206226 |
ggttactgctggtgctggtgcaagtcatgccatccataagaaataccctcaactttttcaacttcttcaatgcaataggcaactcaagtacttttgatcc |
36206325 |
T |
|
| Q |
217 |
tgagaggttaaggaattcagagttgattaactcgcctatttctgaggacagattgattatacaacgattccttgataaatccaacactctcagccttttt |
316 |
Q |
| |
|
||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
36206326 |
tgagaggttaaggaattcagagttgattaactctcctatttctgaggacagattgattatacaacgattccttgataaatccaacactctcagccttttt |
36206425 |
T |
|
| Q |
317 |
atggattggaaatttaatgataaagggtgaccctctcctaaatttaaacaaagggtgatgagattaggacaagttgctatcttccagctttcttccaaca |
416 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
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|
| T |
36206426 |
atggattggaaatttaatgataaagggtgaccctctcctaaatttaaacaaagggtgatgagattaggacaagttggtatcttccagctttcttccaaca |
36206525 |
T |
|
| Q |
417 |
acttggtatccctagttattattgaaatcctctctacaacattcaatcttttagaatccatttccgatatggaaattgcttccccttgaactacaatttt |
516 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
36206526 |
acttggtatccctagttattattgaaatcctctctacaacattcaatcttttagaatccatttccgatatggaaattgcttccccttgaactacaatttt |
36206625 |
T |
|
| Q |
517 |
gtctttgttttcatcttcatctc |
539 |
Q |
| |
|
||||||||||||||||||||||| |
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|
| T |
36206626 |
gtctttgttttcatcttcatctc |
36206648 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 143; E-Value: 7e-75
Query Start/End: Original strand, 61 - 340
Target Start/End: Original strand, 36231479 - 36231755
Alignment:
| Q |
61 |
actaaatctaaacacctttaattgttcaagactttctatcacttccaaaggaatggggttactgctggtgctggtgcaaat-catgccatccataagaaa |
159 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| || | | || ||| ||| |||||||||| | |
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|
| T |
36231479 |
actaaatctaaacacctttaattgttcaagactttctatcacttccaaaggaatgatttta--gca--taatcgtagtaatacatatcatccataaggag |
36231574 |
T |
|
| Q |
160 |
taccctcaactttttcaacttcttcaatgcaataggcaactcaattacttttgatcctgagaggttaaggaattcagagttgattaactcgcctatttct |
259 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |||| | ||||||||||||| || |
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|
| T |
36231575 |
taccctcaactttttcaacttcttcaatgcaataggcaactcaaatacttttgatcctgagaggttaaggaattccaagttcactaactcgcctattcct |
36231674 |
T |
|
| Q |
260 |
gaggacagattgattatacaacgattccttgataaatccaacactctcagcctttttatggattggaaatttaatgataaa |
340 |
Q |
| |
|
|||||||| || |||||||| ||| ||||||||||||||| ||||||||| ||||||||||||||||||||||||||||| |
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|
| T |
36231675 |
gaggacaggttctttatacaaagatcccttgataaatccaatactctcagcttttttatggattggaaatttaatgataaa |
36231755 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 83; E-Value: 5e-39
Query Start/End: Original strand, 354 - 539
Target Start/End: Original strand, 36231790 - 36231969
Alignment:
| Q |
354 |
ctaaatttaaacaaagggtgatgagattaggacaagttgctatcttccagctttcttccaacaacttggtatcc---ctagttattattgaaatcctctc |
450 |
Q |
| |
|
||||| |||||||||||||||||||||| |||||||||| || |||| ||||||||| | | |||| |||||||||| ||||||||||| |
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|
| T |
36231790 |
ctaaacttaaacaaagggtgatgagatttggacaagttggtaccttcaagctttctt---------ttgaatccaacctagttattactgaaatcctctt |
36231880 |
T |
|
| Q |
451 |
tacaacattcaatcttttagaatccatttccgatatggaaattgcttccccttgaactacaattttgtctttgttttcatcttcatctc |
539 |
Q |
| |
|
||||||||| ||||||| | ||| ||||||||| |||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
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|
| T |
36231881 |
tacaacatttaatctttcaaaattcatttccgacatggaaattgcttccctttgaactacaattttgtctttgttttcatcttcatctc |
36231969 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 79; E-Value: 1e-36
Query Start/End: Original strand, 429 - 539
Target Start/End: Original strand, 36221951 - 36222061
Alignment:
| Q |
429 |
tagttattattgaaatcctctctacaacattcaatcttttagaatccatttccgatatggaaattgcttccccttgaactacaattttgtctttgttttc |
528 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||| |||||||| ||||| ||||||||||||||| |||| |
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|
| T |
36221951 |
tagttattattgaaatcctctctacaacattcaatcttttagaatccatttcagacatggaaaatgcttccctttgaagtacaattttgtctttcttttt |
36222050 |
T |
|
| Q |
529 |
atcttcatctc |
539 |
Q |
| |
|
|||| |||||| |
|
|
| T |
36222051 |
atctacatctc |
36222061 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 75; E-Value: 3e-34
Query Start/End: Original strand, 147 - 333
Target Start/End: Original strand, 36221678 - 36221864
Alignment:
| Q |
147 |
catccataagaaataccctcaactttttcaacttcttcaatgcaataggcaactcaattacttttgatcctgagaggttaaggaattcagagttgattaa |
246 |
Q |
| |
|
|||||| ||| | ||||||||| |||||||||||||| ||||| || ||||||| || ||| ||||||| |||||| |||| |||||| |||||||||| |
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|
| T |
36221678 |
catccaaaaggagtaccctcaagtttttcaacttcttaaatgctattggcaactgaaatacgtttgatcttgagagattaatgaattccaagttgattaa |
36221777 |
T |
|
| Q |
247 |
ctcgcctatttctgaggacagattgattatacaacgattccttgataaatccaacactctcagcctttttatggattggaaatttaa |
333 |
Q |
| |
|
|| ||||||||||||||| || | || | | || ||| |||||||||||||||||||| |||||||| ||||||||||||||||| |
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|
| T |
36221778 |
cttgcctatttctgaggagagttgaatcacaaaatcattacttgataaatccaacactctaagccttttcatggattggaaatttaa |
36221864 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 66 - 114
Target Start/End: Original strand, 36221603 - 36221651
Alignment:
| Q |
66 |
atctaaacacctttaattgttcaagactttctatcacttccaaaggaat |
114 |
Q |
| |
|
|||||||||||||||||||||||||||| || | ||||||||||||||| |
|
|
| T |
36221603 |
atctaaacacctttaattgttcaagactatcgaacacttccaaaggaat |
36221651 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 197; Significance: 1e-107; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 197; E-Value: 1e-107
Query Start/End: Original strand, 61 - 539
Target Start/End: Complemental strand, 25474873 - 25474401
Alignment:
| Q |
61 |
actaaatctaaacacctttaattgttcaagactttctatcacttccaaaggaatggggtt-actgctggtgctggtgcaaatcatgccatccataagaaa |
159 |
Q |
| |
|
|||||||||||| |||||||||||||| ||||| ||||||||||||| ||||||| || ||| | | || || ||| ||||||| |||||| |
|
|
| T |
25474873 |
actaaatctaaatacctttaattgttctagactctctatcacttccataggaatgtttttgacttcaag-------gcgaagcataccatccaaaagaaa |
25474781 |
T |
|
| Q |
160 |
taccctcaactttttcaacttcttcaatgcaataggcaactcaattacttttgatcctgagaggttaaggaattcagagttgattaactcgcctatttct |
259 |
Q |
| |
|
||||||||| |||||||||||||||||||||||||||| | ||| |||| || ||||||||||||||||||||| ||||||||||||||||||||||| |
|
|
| T |
25474780 |
taccctcaagtttttcaacttcttcaatgcaataggcagcgcaaatactcctgttcctgagaggttaaggaattccaagttgattaactcgcctatttct |
25474681 |
T |
|
| Q |
260 |
gaggacagattgattatacaacgattccttgataaatccaacactctcagcctttttatggattggaaatttaatgataaagggtgacc------ctc-- |
351 |
Q |
| |
|
| |||||||| | ||| ||||||||||||||||||||||||||||| || ||||||||||||||||||| | |||||||| ||| | ||| |
|
|
| T |
25474680 |
gcggacagat---taataaaacgattccttgataaatccaacactctcggcttttttatggattggaaattcattgataaagcatgatcaatatactcta |
25474584 |
T |
|
| Q |
352 |
-tcctaaatttaaacaaagggtgatgagattaggacaagttgctatcttccagctttcttccaacaacttggtatccc---tagttattattgaaatcct |
447 |
Q |
| |
|
| ||||||||||||||||||| |||||||| |||||||||| |||||||||||||||| || | ||||| || |||||||||||||||| |
|
|
| T |
25474583 |
tttctaaatttaaacaaagggtaatgagattcggacaagttggtatcttccagctttct---------tttgaatcccaagtacttattattgaaatcct |
25474493 |
T |
|
| Q |
448 |
ctctacaacattcaatcttttagaatccatttccgatatggaaattgcttccccttgaactacaattttgtctttgttttcatcttcatctc |
539 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
25474492 |
ctctacaacattcaatcttttagaatccatttccgaaatggaaattgcttccccttgaactacaattttgtctttgttttcatcttcatctc |
25474401 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 141; Significance: 1e-73; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 141; E-Value: 1e-73
Query Start/End: Original strand, 149 - 539
Target Start/End: Original strand, 9766071 - 9766467
Alignment:
| Q |
149 |
tccataagaaataccctcaactttttcaacttcttcaatgcaataggcaactcaattacttttgatcctgagaggttaaggaattcagagttgattaact |
248 |
Q |
| |
|
|||||||||||||||||||| |||||||||||||||| |||||||||||| || ||||| |||| || |||||||||||||| |||||||||||| |
|
|
| T |
9766071 |
tccataagaaataccctcaagtttttcaacttcttcattgcaataggcaatgtaaatacttctgatttggaaaggttaaggaattccaagttgattaact |
9766170 |
T |
|
| Q |
249 |
cgcctatttctgaggacagattgattatacaacgattccttgataaatccaacactctcagcctttttatggattggaaatttaatgataaag--ggtg- |
345 |
Q |
| |
|
||||||||||||||| ||||||||| | || | | |||||||||||||||||||||| |||||| |||||||||||||||||| |||| || | |
|
|
| T |
9766171 |
cgcctatttctgagggcagattgatagaagaatcactatatgataaatccaacactctcagcttttttaaggattggaaatttaatgaaaaagcaggggc |
9766270 |
T |
|
| Q |
346 |
------accctctcctaaatttaaacaaagggtgatgagattaggacaagttgctatcttccagctttcttccaacaacttggtatccctagttattatt |
439 |
Q |
| |
|
| || | |||||||||||||||||||||||||||| |||||||||| || ||||||||||||||| || | | || | |||||||| |
|
|
| T |
9766271 |
atcaaaatccatttctaaatttaaacaaagggtgatgagatttggacaagttggtaccttccagctttcttctaaattccag---tcagtgtttattatt |
9766367 |
T |
|
| Q |
440 |
gaaatcctctctacaacattcaatcttttagaatccatttccgatatggaaattgcttccccttgaactacaattttgtctttgttttcatcttcatctc |
539 |
Q |
| |
|
||||||||||||||||||||||||||| ||||||||||||| || || ||| |||||||| |||||||||||||||||||||||||||||||||||||| |
|
|
| T |
9766368 |
gaaatcctctctacaacattcaatcttctagaatccatttctgacattgaagatgcttccctttgaactacaattttgtctttgttttcatcttcatctc |
9766467 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 63 - 109
Target Start/End: Original strand, 9765988 - 9766034
Alignment:
| Q |
63 |
taaatctaaacacctttaattgttcaagactttctatcacttccaaa |
109 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
9765988 |
taaatctaaacacctttaattgttcaagactttctatcacttccaaa |
9766034 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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