View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4205_low_12 (Length: 511)

Name: NF4205_low_12
Description: NF4205
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4205_low_12
NF4205_low_12
[»] chr7 (5 HSPs)
chr7 (18-215)||(24602252-24602444)
chr7 (348-499)||(24601768-24601919)
chr7 (273-343)||(24602184-24602254)
chr7 (48-174)||(10594992-10595112)
chr7 (156-234)||(10593969-10594047)
[»] chr3 (2 HSPs)
chr3 (48-238)||(41468810-41468993)
chr3 (428-484)||(1195757-1195813)
[»] chr5 (5 HSPs)
chr5 (57-235)||(4963250-4963422)
chr5 (127-238)||(1227851-1227962)
chr5 (125-235)||(10408264-10408374)
chr5 (48-166)||(29401625-29401742)
chr5 (274-347)||(2292649-2292722)
[»] chr6 (3 HSPs)
chr6 (428-484)||(19805240-19805296)
chr6 (281-347)||(34788472-34788538)
chr6 (428-484)||(22518354-22518410)
[»] chr2 (1 HSPs)
chr2 (48-235)||(27718519-27718698)
[»] chr4 (1 HSPs)
chr4 (281-346)||(2597808-2597873)
[»] chr1 (1 HSPs)
chr1 (347-434)||(8312823-8312912)


Alignment Details
Target: chr7 (Bit Score: 149; Significance: 2e-78; HSPs: 5)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 149; E-Value: 2e-78
Query Start/End: Original strand, 18 - 215
Target Start/End: Complemental strand, 24602444 - 24602252
Alignment:
Q  18 aagatatgtactgaaggatgttttttatatcagctatgctatataatacaaagctttacaaatgaaaaacgacaaaactcatacgtgtttttacagtggg 117  Q
    |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| ||| || |||||    
T  24602444 aagatatgtactgaaggatgttttatatatcagctatgctatataatacaaagctttacaaatgaaaaacgacgaaactcatacgtg-tttcacggtggg 24602346  T
Q  118 agaattatatataattctggattggatggaataaaggcagtatggtggtaaaaaattggctgccaagtaatggatttgttttcgctagtttttggttc 215  Q
    |||| |||||    ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  24602345 agaactatat----ttctggattggatggaataaaggcactatggtggtaaaaaattggctgccaagtaatggatttgttttcgctagtttttggttc 24602252  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 136; E-Value: 1e-70
Query Start/End: Original strand, 348 - 499
Target Start/End: Complemental strand, 24601919 - 24601768
Alignment:
Q  348 taaagggacatccatattttcttgaacgtgtcttctcgttttgacttcttctttatttcgttatacttgccacttctttgacaagctttggttttctacg 447  Q
    |||||||||||||| ||||||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||    
T  24601919 taaagggacatccacattttcttgaacgtgtcttcttgttttgacttcttctttgtttcgttatacttgccacttctttgacaagctttggttttctacg 24601820  T
Q  448 tgcagagccactattggatttatctattataagcgtagatttggcctatatt 499  Q
    ||||||||||||||||||||||||||||||||||||| ||||||||||||||    
T  24601819 tgcagagccactattggatttatctattataagcgtaaatttggcctatatt 24601768  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 273 - 343
Target Start/End: Complemental strand, 24602254 - 24602184
Alignment:
Q  273 ttcagccggaggaacattagctatagctctatgataaacctccttggttgtttccttattcctcacactct 343  Q
    ||||||||||||||||||||||| |||||| | |||||||||||||||||||||||||||||| |||||||    
T  24602254 ttcagccggaggaacattagctacagctctctcataaacctccttggttgtttccttattcctgacactct 24602184  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 48 - 174
Target Start/End: Complemental strand, 10595112 - 10594992
Alignment:
Q  48 cagctatgctatataatacaaagctttacaaatgaaaaacgacaaaactcatacgtgtttttacagtgggagaattatatataattctggattggatgga 147  Q
    ||||||||||||||| | | |||||||||  | ||||||| || |||||||||| |||    || ||||||||||||||||  |||  ||||||||||||    
T  10595112 cagctatgctatatagtgcgaagctttacgcacgaaaaacaacgaaactcatacatgt----acggtgggagaattatata--atttcggattggatgga 10595019  T
Q  148 ataaaggcagtatggtggtaaaaaatt 174  Q
    |||||| ||||||||||||| ||||||    
T  10595018 ataaagccagtatggtggtataaaatt 10594992  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 156 - 234
Target Start/End: Complemental strand, 10594047 - 10593969
Alignment:
Q  156 agtatggtggtaaaaaattggctgccaagtaatggatttgttttcgctagtttttggttctgcactaagaataatttct 234  Q
    |||||||||||| ||||||  ||||||  |||||||||||||||||||||||| | |||  ||||||||||| ||||||    
T  10594047 agtatggtggtataaaattaactgccacataatggatttgttttcgctagtttctcgtttcgcactaagaatcatttct 10593969  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 75; Significance: 3e-34; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 75; E-Value: 3e-34
Query Start/End: Original strand, 48 - 238
Target Start/End: Complemental strand, 41468993 - 41468810
Alignment:
Q  48 cagctatgctatataatacaaagctttacaaatgaaaaacgacaaaactcatacgtgtttttacagtgggagaattatatataattctggattggatgga 147  Q
    ||||||||||||||| | | |||||||||  | ||||||| || |||||| |||||||    || ||||||||||||||||  |||||||||||||||||    
T  41468993 cagctatgctatatagtgcgaagctttacgcacgaaaaacaacgaaactc-tacgtgt----acggtgggagaattatata--attctggattggatgga 41468901  T
Q  148 ataaaggcagtatggtggtaaaaaattggctgccaagtaatggatttgttttcgctagtttttggttctgcactaagaataatttctcata 238  Q
    |||||| |||||||| |||| ||||||  |||||| ||||||||||||||||||||||||| | |||  ||||||||||| ||||||||||    
T  41468900 ataaagccagtatgggggtataaaattaactgccacgtaatggatttgttttcgctagtttctcgtttcgcactaagaatcatttctcata 41468810  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 428 - 484
Target Start/End: Complemental strand, 1195813 - 1195757
Alignment:
Q  428 acaagctttggttttctacgtgcagagccactattggatttatctattataagcgta 484  Q
    |||||||| |||||||||||| |  | ||||||| ||||||||||||||||||||||    
T  1195813 acaagcttcggttttctacgtcccaaaccactataggatttatctattataagcgta 1195757  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 71; Significance: 6e-32; HSPs: 5)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 71; E-Value: 6e-32
Query Start/End: Original strand, 57 - 235
Target Start/End: Complemental strand, 4963422 - 4963250
Alignment:
Q  57 tatataatacaaagctttacaaatgaaaaacgacaaaactcatacgtgtttttacagtgggagaattatatataattctggattggatggaataaaggca 156  Q
    |||||| ||| |||||||||  | ||||||| || ||||||||||||||    || ||||||||||||||||  |||| |||||||||||||||||| ||    
T  4963422 tatatagtacgaagctttacgcacgaaaaacaacgaaactcatacgtgt----acggtgggagaattatata--attccggattggatggaataaagcca 4963329  T
Q  157 gtatggtggtaaaaaattggctgccaagtaatggatttgttttcgctagtttttggttctgcactaagaataatttctc 235  Q
    ||||||||||| ||||||  ||||||  |||||||||||||||||||||||| | |||  ||||||||||| |||||||    
T  4963328 gtatggtggtataaaattaactgccacctaatggatttgttttcgctagtttctcgtttcgcactaagaatcatttctc 4963250  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 127 - 238
Target Start/End: Complemental strand, 1227962 - 1227851
Alignment:
Q  127 tataattctggattggatggaataaaggcagtatggtggtaaaaaattggctgccaagtaatggatttgttttcgctagtttttggttctgcactaagaa 226  Q
    |||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||||| ||||  || || || ||||| |||| | ||||||||    
T  1227962 tataattccggattggatggaataaaggcagtatggtggtaaaaaattggctgccacgtaatgcattttcttccgttaatttttcgttccgtactaagaa 1227863  T
Q  227 taatttctcata 238  Q
      ||||||||||    
T  1227862 gcatttctcata 1227851  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 125 - 235
Target Start/End: Original strand, 10408264 - 10408374
Alignment:
Q  125 tatataattctggattggatggaataaaggcagtatggtggtaaaaaattggctgccaagtaatggatttgttttcgctagtttttggttctgcactaag 224  Q
    |||||||||| |||||||||||||||||  | || |||||||| ||||||  |||||| ||||||||||| |||| |||||||| |  ||  ||||||||    
T  10408264 tatataattccggattggatggaataaatccggtgtggtggtataaaattaactgccacgtaatggattttttttggctagtttctcatttcgcactaag 10408363  T
Q  225 aataatttctc 235  Q
    ||| |||||||    
T  10408364 aatcatttctc 10408374  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 48 - 166
Target Start/End: Original strand, 29401625 - 29401742
Alignment:
Q  48 cagctatgctatataatacaaagctttacaaatgaaaaacgacaaaactcatacgtgtttttacag-tgggagaattatatataattctggattggatgg 146  Q
    |||||||||| |||| ||| ||||| |||||| ||||||| || |||||||||| |||||    || |||||||||| ||||  |||| |||||||||||    
T  29401625 cagctatgctttatagtacgaagctatacaaacgaaaaactacgaaactcatacatgtttcgcaaggtgggagaattttata--attccggattggatgg 29401722  T
Q  147 aataaaggcagtatggtggt 166  Q
    ||||||||||||| ||||||    
T  29401723 aataaaggcagtacggtggt 29401742  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 274 - 347
Target Start/End: Original strand, 2292649 - 2292722
Alignment:
Q  274 tcagccggaggaacattagctatagctctatgataaacctccttggttgtttccttattcctcacactctcttc 347  Q
    ||||| ||||||||||| ||||||||||| | |||||||||| | ||| ||||||||||||  |||||||||||    
T  2292649 tcagcaggaggaacattggctatagctctctcataaacctccctagttctttccttattcccaacactctcttc 2292722  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 41; Significance: 0.00000000000005; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 428 - 484
Target Start/End: Complemental strand, 19805296 - 19805240
Alignment:
Q  428 acaagctttggttttctacgtgcagagccactattggatttatctattataagcgta 484  Q
    |||||||| |||||||||||| |||| ||||||| ||||||||||||||||||||||    
T  19805296 acaagcttcggttttctacgtccagaaccactataggatttatctattataagcgta 19805240  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 281 - 347
Target Start/End: Complemental strand, 34788538 - 34788472
Alignment:
Q  281 gaggaacattagctatagctctatgataaacctccttggttgtttccttattcctcacactctcttc 347  Q
    |||| ||||||||||||||||| | |||||||||| | ||| ||||||||||||  |||||||||||    
T  34788538 gaggtacattagctatagctctctcataaacctccctagttctttccttattcccgacactctcttc 34788472  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 428 - 484
Target Start/End: Complemental strand, 22518410 - 22518354
Alignment:
Q  428 acaagctttggttttctacgtgcagagccactattggatttatctattataagcgta 484  Q
    |||||||| | |||||||||| | || ||||||| |||||||| |||||||||||||    
T  22518410 acaagcttcgattttctacgtccggaaccactataggatttatttattataagcgta 22518354  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 48 - 235
Target Start/End: Complemental strand, 27718698 - 27718519
Alignment:
Q  48 cagctatgctatataatacaaagctttacaaatgaaaaacgacaaaactcatacgtgtttttacagtgggagaattatatataattctggattggatgga 147  Q
    ||||||||||||||| | | || ||||||  | ||||||| || ||||||||||||||    || ||||||||||||||||  |||| | ||||||||||    
T  27718698 cagctatgctatatagtgcgaaactttacgcacgaaaaacaacgaaactcatacgtgt----ac-gtgggagaattatata--attccgaattggatgga 27718606  T
Q  148 ataaaggcagtatggtggtaaaaaattggctgccaagtaatggatttgttttcgctagtttttggttctgcactaagaataatttctc 235  Q
    |||||  ||| ||||||||| ||||||  ||||||  |||| ||||| ||||||||||||| | |||  ||| ||||||| |||||||    
T  27718605 ataaaaccagaatggtggtataaaattaactgccacataatagattt-ttttcgctagtttctcgtttcgcattaagaatcatttctc 27718519  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 38; Significance: 0.000000000003; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 281 - 346
Target Start/End: Original strand, 2597808 - 2597873
Alignment:
Q  281 gaggaacattagctatagctctatgataaacctccttggttgtttccttattcctcacactctctt 346  Q
    |||||||||||||||||||||| | |||||||||| | ||| ||||||||||||  ||||||||||    
T  2597808 gaggaacattagctatagctctctcataaacctccatagttctttccttattcccgacactctctt 2597873  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 347 - 434
Target Start/End: Complemental strand, 8312912 - 8312823
Alignment:
Q  347 ctaaagggacatccatattttcttgaac--gtgtcttctcgttttgacttcttctttatttcgttatacttgccacttctttgacaagct 434  Q
    |||||||||||  ||||||| |||||||  ||||||| | ||||  ||||||||||| |||| ||||||| ||||||||||| |||||||    
T  8312912 ctaaagggacactcatatttccttgaacatgtgtcttgttgtttcaacttcttctttgtttctttatactcgccacttctttaacaagct 8312823  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University