View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF4205_low_14 (Length: 467)
Name: NF4205_low_14
Description: NF4205
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4205_low_14 |
 | |
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| [»] scaffold0289 (1 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 234; Significance: 1e-129; HSPs: 8)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 234; E-Value: 1e-129
Query Start/End: Original strand, 13 - 450
Target Start/End: Complemental strand, 15672434 - 15672000
Alignment:
| Q |
13 |
ttggtttccaataaatatgtgcaacgctactaactacatattgcttccaatcataacaaagtatcttaag-------ccatcaccctatagcttccatgg |
105 |
Q |
| |
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||||||||| |||||||| |||||| ||||||| ||||||| | |||||||| || ||||||||||||| || |||||||||||||||||||| |
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| T |
15672434 |
ttggtttcctataaatatctgcaacactactaattacatatag--tccaatcaaaataaagtatcttaagtgctaagccctcaccctatagcttccatgg |
15672337 |
T |
|
| Q |
106 |
tgtccatatttccaatgctgcaagtcatgaagtgtgtacacttttggctgtttttctcaatgtacttttgtccactcataactaacaacccttcttcttc |
205 |
Q |
| |
|
||||||||||||||| ||| || |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
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| T |
15672336 |
tgtccatatttccaacgcttcagaccatgaagtgtgtactcttttggctgtttttctcaatgtacttttgtccactcataactaac------ccttcttc |
15672243 |
T |
|
| Q |
206 |
aattgttggtttttccctaacaattgcatctacttcttccactttacaaagtagagaaacaagtgctttgttgaagtggaaagcgagtcttgataaccaa |
305 |
Q |
| |
|
|||||||||||||||| ||||||| ||||| ||||||| |||||||||||||||||| ||||||| ||||||||||||||||| ||||||||||||||| |
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| T |
15672242 |
aattgttggtttttcc--aacaatttcatctgcttcttctactttacaaagtagagaagcaagtgcgttgttgaagtggaaagcaagtcttgataaccaa |
15672145 |
T |
|
| Q |
306 |
agccaagctttgttatcttcatggagtggcaataattcatgcaactggtttggaatcacgtgtgatgaagattccatgtctgtctctgatgtaggtctca |
405 |
Q |
| |
|
||||||||||||||||||||||||| || ||||| ||||||||||||||| ||||| ||||||||||||||||||||||| ||||| ||||| |||| |
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| T |
15672144 |
agccaagctttgttatcttcatggaatgacaatatttcatgcaactggttgggaattacgtgtgatgaagattccatgtccgtctcaaatgtaaatctcg |
15672045 |
T |
|
| Q |
406 |
caaatatgggattgagaggtacgcttgaaagtcttaacttttcat |
450 |
Q |
| |
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|||||||| |||||||||||||||||||||||||||||| |||| |
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|
| T |
15672044 |
caaatatgaaattgagaggtacgcttgaaagtcttaacttctcat |
15672000 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 222; E-Value: 1e-122
Query Start/End: Original strand, 131 - 442
Target Start/End: Complemental strand, 15680528 - 15680221
Alignment:
| Q |
131 |
catgaagtgtgtacacttttggctgtttttctcaatgtacttttgtccactcataactaacaacccttcttcttcaattgttggtttttccctaacaatt |
230 |
Q |
| |
|
|||||||||||||| ||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||| |
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|
| T |
15680528 |
catgaagtgtgtact-ttttggctgtttttctcaatgtacttttgtccactcata---atgaacccttcttcttcaattgttggtttttccctaacaatt |
15680433 |
T |
|
| Q |
231 |
gcatctacttcttccactttacaaagtagagaaacaagtgctttgttgaagtggaaagcgagtcttgataaccaaagccaagctttgttatcttcatgga |
330 |
Q |
| |
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|||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
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| T |
15680432 |
tcatctacttcttccactttacaaagtagagaagcaagtgctttgttgaagtggaaagcaagtcttgataaccaaagccaagctttgttatcttcatgga |
15680333 |
T |
|
| Q |
331 |
gtggcaataattcatgcaactggtttggaatcacgtgtgatgaagattccatgtctgtctctgatgtaggtctcacaaatatgggattgagaggtacgct |
430 |
Q |
| |
|
|||||||||||||||||| |||||| ||||||||||||||||||||||| |||||| | ||| ||||| |||||||||||||| ||||| ||||||| | |
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| T |
15680332 |
gtggcaataattcatgcagctggttcggaatcacgtgtgatgaagattcgatgtctctgtctaatgtaagtctcacaaatatgaaattgaaaggtacgtt |
15680233 |
T |
|
| Q |
431 |
tgaaagtcttaa |
442 |
Q |
| |
|
|||||||||||| |
|
|
| T |
15680232 |
tgaaagtcttaa |
15680221 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 189; E-Value: 1e-102
Query Start/End: Original strand, 132 - 450
Target Start/End: Complemental strand, 15667035 - 15666714
Alignment:
| Q |
132 |
atgaagtgtgtacacttttggctgtttttctcaatgtacttttgtccactcataactaacaacc-----cttcttcttcaattgttggtttttccctaac |
226 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| || |||||||||| | ||||||| |||| | || |
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| T |
15667035 |
atgaagtgtgtacacttttggctgtttttctcaatgtacttttgtgcactcataactaac--ccttcttcttcttcttctgtggttggttcttcctttac |
15666938 |
T |
|
| Q |
227 |
aattgcatctacttcttccactttacaaagtagagaaacaagtgctttgttgaagtggaaagcgagtcttgataaccaaagccaagctttgttatcttca |
326 |
Q |
| |
|
||| | | |||| |||||| | ||||| | |||| ||||||||||||||||||||||||| |||||||| ||||||||||||| ||||||||||||| |
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|
| T |
15666937 |
tatttctgcagcttcatccactgttcaaagcaaagaagcaagtgctttgttgaagtggaaagcaagtcttgacaaccaaagccaagttttgttatcttca |
15666838 |
T |
|
| Q |
327 |
tggagtggcaataattcatgcaactggtttggaatcacgtgtgatgaagattccatgtctgtctctgatgtaggtctcacaaatatgggattgagaggta |
426 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||| |||||||||||||||||||| |
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| T |
15666837 |
tggagtggcaataattcatgcaactggtttggaatcacgtgtgatgaagattccatgtctgtctctaatgtaagtctcaaaaatatgggattgagaggta |
15666738 |
T |
|
| Q |
427 |
cgcttgaaagtcttaacttttcat |
450 |
Q |
| |
|
||||||||||||||||||| |||| |
|
|
| T |
15666737 |
cgcttgaaagtcttaacttctcat |
15666714 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 133; E-Value: 6e-69
Query Start/End: Original strand, 246 - 450
Target Start/End: Original strand, 16022935 - 16023139
Alignment:
| Q |
246 |
actttacaaagtagagaaacaagtgctttgttgaagtggaaagcgagtcttgataaccaaagccaagctttgttatcttcatggagtggcaataattcat |
345 |
Q |
| |
|
|||||||||||||||||| ||||||||||| ||||||||||| | |||||||| ||||| |||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
16022935 |
actttacaaagtagagaagcaagtgctttgctgaagtggaaaacaagtcttgacaaccatagccaagctttgttatcttcatggagtggcaataattcat |
16023034 |
T |
|
| Q |
346 |
gcaactggtttggaatcacgtgtgatgaagattccatgtctgtctctgatgtaggtctcacaaatatgggattgagaggtacgcttgaaagtcttaactt |
445 |
Q |
| |
|
|||||||| ||||||| | ||| ||||||||||||| ||||||||| | ||| |||||||||||||||||||| |||||||||||||||||||||||| |
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|
| T |
16023035 |
gcaactggcttggaatttcttgtaatgaagattccatttctgtctctaaggtaaatctcacaaatatgggattgaaaggtacgcttgaaagtcttaactt |
16023134 |
T |
|
| Q |
446 |
ttcat |
450 |
Q |
| |
|
|||| |
|
|
| T |
16023135 |
ctcat |
16023139 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 121; E-Value: 8e-62
Query Start/End: Original strand, 246 - 450
Target Start/End: Original strand, 14603464 - 14603668
Alignment:
| Q |
246 |
actttacaaagtagagaaacaagtgctttgttgaagtggaaagcgagtcttgataaccaaagccaagctttgttatcttcatggagtggcaataattcat |
345 |
Q |
| |
|
|||||||||||||||||| ||||||||||||||||||||||| |||||||| ||||| |||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
14603464 |
actttacaaagtagagaagcaagtgctttgttgaagtggaaaataagtcttgacaaccatagccaagctttgttatcttcatggagtggcaataattcat |
14603563 |
T |
|
| Q |
346 |
gcaactggtttggaatcacgtgtgatgaagattccatgtctgtctctgatgtaggtctcacaaatatgggattgagaggtacgcttgaaagtcttaactt |
445 |
Q |
| |
|
|||||||| ||||||| | ||| | ||||||||||| ||||||||| | ||| ||| |||||||||||||||| ||||||||| |||||||||||||| |
|
|
| T |
14603564 |
gcaactggcttggaatttcttgtaaagaagattccatttctgtctctaaggtaaatctgacaaatatgggattgaaaggtacgctcgaaagtcttaactt |
14603663 |
T |
|
| Q |
446 |
ttcat |
450 |
Q |
| |
|
|||| |
|
|
| T |
14603664 |
ctcat |
14603668 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 114; E-Value: 1e-57
Query Start/End: Original strand, 265 - 450
Target Start/End: Original strand, 16170724 - 16170909
Alignment:
| Q |
265 |
caagtgctttgttgaagtggaaagcgagtcttgataaccaaagccaagctttgttatcttcatggagtggcaataattcatgcaactggtttggaatcac |
364 |
Q |
| |
|
||||||||||||||||||||||||| |||||||| ||||| |||||| ||||| ||||||||||||||||||||||||||||||||||| ||||||| | |
|
|
| T |
16170724 |
caagtgctttgttgaagtggaaagcaagtcttgacaaccatagccaaactttgctatcttcatggagtggcaataattcatgcaactggcttggaatttc |
16170823 |
T |
|
| Q |
365 |
gtgtgatgaagattccatgtctgtctctgatgtaggtctcacaaatatgggattgagaggtacgcttgaaagtcttaacttttcat |
450 |
Q |
| |
|
||| | ||||||||||| ||||||||| | ||| |||||||||||||||||||| |||||||||||||||||||||||| |||| |
|
|
| T |
16170824 |
ttgtaaagaagattccatttctgtctctaaggtaaatctcacaaatatgggattgaaaggtacgcttgaaagtcttaacttctcat |
16170909 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #7
Raw Score: 111; E-Value: 8e-56
Query Start/End: Original strand, 272 - 450
Target Start/End: Original strand, 16101053 - 16101231
Alignment:
| Q |
272 |
tttgttgaagtggaaagcgagtcttgataaccaaagccaagctttgttatcttcatggagtggcaataattcatgcaactggtttggaatcacgtgtgat |
371 |
Q |
| |
|
|||||||| ||||||||| || ||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||| | |
|
|
| T |
16101053 |
tttgttgatgtggaaagcaagccttgacaatcaaagccaagctttgttatcttcatggagtggcaataattcatgcaactggtttggaatttcttgtaaa |
16101152 |
T |
|
| Q |
372 |
gaagattccatgtctgtctctgatgtaggtctcacaaatatgggattgagaggtacgcttgaaagtcttaacttttcat |
450 |
Q |
| |
|
||||||||||| ||||||||| | ||| |||||||||||||||||||| |||||||||||||||||||||||| |||| |
|
|
| T |
16101153 |
gaagattccatttctgtctctaaggtaaatctcacaaatatgggattgaaaggtacgcttgaaagtcttaacttctcat |
16101231 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #8
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 253 - 450
Target Start/End: Original strand, 17847124 - 17847321
Alignment:
| Q |
253 |
aaagtagagaaacaagtgctttgttgaagtggaaagcgagtcttgataaccaaagccaagctttgttatcttcatggagtggcaataattcatgcaactg |
352 |
Q |
| |
|
||||||||||| ||||| |||||||||| |||||| | ||||| | ||||||||||||||||||||||||||| |||||| |||||||||||||| |
|
|
| T |
17847124 |
aaagtagagaagcaagttctttgttgaaatggaaaagcaaccttgaaatagaaagccaagctttgttatcttcatggaatggcaacaattcatgcaactg |
17847223 |
T |
|
| Q |
353 |
gtttggaatcacgtgtgatgaagattccatgtctgtctctgatgtaggtctcacaaatatgggattgagaggtacgcttgaaagtcttaacttttcat |
450 |
Q |
| |
|
| | ||||| || |||||||||||| ||| | |||| | ||||| ||||||||| |||||||| | |||||| ||||||| ||| ||||| |||| |
|
|
| T |
17847224 |
gatgggaattacatgtgatgaagataacatatttgtcaccaatgtaaatctcacaaaaatgggattaaaaggtacacttgaaactctcaacttctcat |
17847321 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0289 (Bit Score: 144; Significance: 2e-75; HSPs: 1)
Name: scaffold0289
Description:
Target: scaffold0289; HSP #1
Raw Score: 144; E-Value: 2e-75
Query Start/End: Original strand, 131 - 450
Target Start/End: Complemental strand, 19907 - 19582
Alignment:
| Q |
131 |
catgaagtgtgtacacttttggctgtttttctcaatgtacttttgtccactcataactaacaacc--------cttcttcttcaattgttggtttttccc |
222 |
Q |
| |
|
||||||||||||||||||||||||||||| |||||||||||||||| |||||||||||||| || |||||||||| | |||||| |||| |
|
|
| T |
19907 |
catgaagtgtgtacacttttggctgttttcctcaatgtacttttgtacactcataactaac--ccttcttcttcttcttcttctgtgtttggttcttcct |
19810 |
T |
|
| Q |
223 |
taacaattgcatctacttcttccactttacaaagtagagaaacaagtgctttgttgaagtggaaagcgagtcttgataaccaaagccaagctttgttatc |
322 |
Q |
| |
|
| || ||| | | |||| |||||| | ||||| | |||| ||||||||||||||||||||| ||| |||||||| |||||||||||| ||||| |||| |
|
|
| T |
19809 |
ttactatttctgcagcttcatccactgttcaaagcaaagaagcaagtgctttgttgaagtggatagcaagtcttgacaaccaaagccaaactttgctatc |
19710 |
T |
|
| Q |
323 |
ttcatggagtggcaataattcatgcaactggtttggaatcacgtgtgatgaagattccatgtctgtctctgatgtaggtctcacaaatatgggattgaga |
422 |
Q |
| |
|
|||||||||||||||||| ||||||||||||||||||||||| |||| |||||||||| ||||||| ||| ||||| |||||||||||||| ||||||| |
|
|
| T |
19709 |
ttcatggagtggcaataactcatgcaactggtttggaatcacatgtggtgaagattccttgtctgtttctaatgtaagtctcacaaatatgaaattgaga |
19610 |
T |
|
| Q |
423 |
ggtacgcttgaaagtcttaacttttcat |
450 |
Q |
| |
|
||||||||||||||||||||||| |||| |
|
|
| T |
19609 |
ggtacgcttgaaagtcttaacttctcat |
19582 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 33; Significance: 0.000000003; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 269 - 341
Target Start/End: Complemental strand, 14534827 - 14534755
Alignment:
| Q |
269 |
tgctttgttgaagtggaaagcgagtcttgataaccaaagccaagctttgttatcttcatggagtggcaataat |
341 |
Q |
| |
|
|||| |||||||||||||||| || ||||| ||||| ||| | |||||| | |||||||||| |||||||||| |
|
|
| T |
14534827 |
tgctctgttgaagtggaaagcaagccttgacaaccatagcaatgctttgctctcttcatggattggcaataat |
14534755 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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