View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4205_low_15 (Length: 453)

Name: NF4205_low_15
Description: NF4205
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4205_low_15
NF4205_low_15
[»] chr8 (3 HSPs)
chr8 (19-443)||(2033462-2033882)
chr8 (133-208)||(2054811-2054886)
chr8 (231-288)||(10768176-10768233)
[»] scaffold0515 (1 HSPs)
scaffold0515 (86-163)||(10090-10167)
[»] scaffold0152 (2 HSPs)
scaffold0152 (86-163)||(27710-27787)
scaffold0152 (86-163)||(36486-36563)
[»] scaffold0055 (8 HSPs)
scaffold0055 (86-163)||(17937-18014)
scaffold0055 (86-163)||(20672-20749)
scaffold0055 (86-163)||(23911-23988)
scaffold0055 (86-163)||(37144-37221)
scaffold0055 (86-163)||(44993-45070)
scaffold0055 (86-163)||(57718-57795)
scaffold0055 (86-163)||(29249-29326)
scaffold0055 (86-163)||(76409-76485)
[»] scaffold0052 (8 HSPs)
scaffold0052 (86-163)||(8900-8977)
scaffold0052 (86-163)||(12102-12179)
scaffold0052 (86-163)||(16542-16619)
scaffold0052 (86-163)||(20915-20992)
scaffold0052 (86-163)||(39836-39913)
scaffold0052 (86-163)||(55322-55399)
scaffold0052 (86-163)||(43312-43388)
scaffold0052 (86-163)||(66739-66816)


Alignment Details
Target: chr8 (Bit Score: 345; Significance: 0; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 345; E-Value: 0
Query Start/End: Original strand, 19 - 443
Target Start/End: Original strand, 2033462 - 2033882
Alignment:
Q  19 aatgtgtcgaaatcgtctccaatacttagccacnnnnnnnnnnn-ggactagtcgaagtaacaacttaacaaggactaaatttcagtgaatcgtggcagt 117  Q
    |||||||||||||||||||||||||||||||||            |||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2033462 aatgtgtcgaaatcgtctccaatacttagccacttttttttttttggactagtcgaagtaacaacttaacaaggactaaatttcagtgaatcgtggcagt 2033561  T
Q  118 aaggccactctacaacttacaatacttcgctgcgtatttaagtcgtactcaagcttagcctttttctaatatctctaattttgtcttatatataagaaaa 217  Q
    ||||||| ||||| |||||||||||||||| |||||||||||||||||||||||     |||||||||||||||||||||||||||||||||||||||||    
T  2033562 aaggccattctacgacttacaatacttcgcagcgtatttaagtcgtactcaagc-----ctttttctaatatctctaattttgtcttatatataagaaaa 2033656  T
Q  218 tgtgttttcatttgtgaaattgctttcatatccttattttgaggtgtattaatcggtgaaatagctttgatatatccttttcatagtcactagaattgca 317  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||    
T  2033657 tgtgttttcatttgtgaaattgctttcatatccttattttgaggtgtattaatcggtgaaatagctttgatatatccttttcatattcactagaattgca 2033756  T
Q  318 tctatttcacatgagatgaaaggtctatttataagaaacaaatcacatatagtagtataaaaaccaactgatacaaactatgaaaagtatgaaactgaat 417  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2033757 tctatttcacatgagatgaaaggtctatttataagaaacaaatcacatatagtagtataaaaaccaactgatacaaactatgaaaagtatgaaactgaat 2033856  T
Q  418 ttaatccataattttttctctctctg 443  Q
    ||||||||||||||||| ||||||||    
T  2033857 ttaatccataattttttttctctctg 2033882  T

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Target: chr8; HSP #2
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 133 - 208
Target Start/End: Original strand, 2054811 - 2054886
Alignment:
Q  133 cttacaatacttcgctgcgtatttaagtcgtactcaagcttagcctttttctaatatctctaattttgtcttatat 208  Q
    ||||||||||| |||||| |||||||||| |||||||||||||||||||||||||||||||||| ||||| |||||    
T  2054811 cttacaatactccgctgcctatttaagtcatactcaagcttagcctttttctaatatctctaatcttgtcatatat 2054886  T

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Target: chr8; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 231 - 288
Target Start/End: Original strand, 10768176 - 10768233
Alignment:
Q  231 gtgaaattgctttcatatccttattttgaggtgtattaatcggtgaaatagctttgat 288  Q
    |||||||| |||||||||||||||||| || ||||||||| | |||| | ||||||||    
T  10768176 gtgaaattactttcatatccttatttttagatgtattaattgatgaagtggctttgat 10768233  T

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Target: scaffold0515 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 1)
Name: scaffold0515
Description:

Target: scaffold0515; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 86 - 163
Target Start/End: Complemental strand, 10167 - 10090
Alignment:
Q  86 acaaggactaaatttcagtgaatcgtggcagtaaggccactctacaacttacaatacttcgctgcgtatttaagtcgt 163  Q
    |||||| |||||| |||||| |||||||||| ||||||||||| | ||||||||||| |||  |||||||||||||||    
T  10167 acaagggctaaatctcagtggatcgtggcagcaaggccactctgccacttacaatacctcgtcgcgtatttaagtcgt 10090  T

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Target: scaffold0152 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 2)
Name: scaffold0152
Description:

Target: scaffold0152; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 86 - 163
Target Start/End: Complemental strand, 27787 - 27710
Alignment:
Q  86 acaaggactaaatttcagtgaatcgtggcagtaaggccactctacaacttacaatacttcgctgcgtatttaagtcgt 163  Q
    |||||| |||||| |||||| |||||||||| ||||||||||| | ||||||||||| |||  |||||||||||||||    
T  27787 acaagggctaaatctcagtggatcgtggcagcaaggccactctgccacttacaatacctcgtcgcgtatttaagtcgt 27710  T

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Target: scaffold0152; HSP #2
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 86 - 163
Target Start/End: Complemental strand, 36563 - 36486
Alignment:
Q  86 acaaggactaaatttcagtgaatcgtggcagtaaggccactctacaacttacaatacttcgctgcgtatttaagtcgt 163  Q
    |||||| |||||| |||||| |||||||||| ||||||||||| | ||||||||||| |||  |||||||||||||||    
T  36563 acaagggctaaatctcagtggatcgtggcagcaaggccactctgccacttacaatacctcgtcgcgtatttaagtcgt 36486  T

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Target: scaffold0055 (Bit Score: 34; Significance: 0.0000000007; HSPs: 8)
Name: scaffold0055
Description:

Target: scaffold0055; HSP #1
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 86 - 163
Target Start/End: Complemental strand, 18014 - 17937
Alignment:
Q  86 acaaggactaaatttcagtgaatcgtggcagtaaggccactctacaacttacaatacttcgctgcgtatttaagtcgt 163  Q
    |||||| || ||| |||||| |||||||||| ||||||||||| | |||||||||||  ||  |||||||||||||||    
T  18014 acaagggctgaatctcagtggatcgtggcagcaaggccactctgccacttacaataccccgtcgcgtatttaagtcgt 17937  T

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Target: scaffold0055; HSP #2
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 86 - 163
Target Start/End: Original strand, 20672 - 20749
Alignment:
Q  86 acaaggactaaatttcagtgaatcgtggcagtaaggccactctacaacttacaatacttcgctgcgtatttaagtcgt 163  Q
    |||||| || ||| |||||| |||||||||| ||||||||||| | |||||||||||  ||  |||||||||||||||    
T  20672 acaagggctgaatctcagtggatcgtggcagcaaggccactctgccacttacaataccccgtcgcgtatttaagtcgt 20749  T

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Target: scaffold0055; HSP #3
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 86 - 163
Target Start/End: Original strand, 23911 - 23988
Alignment:
Q  86 acaaggactaaatttcagtgaatcgtggcagtaaggccactctacaacttacaatacttcgctgcgtatttaagtcgt 163  Q
    |||||| || ||| |||||| |||||||||| ||||||||||| | |||||||||||  ||  |||||||||||||||    
T  23911 acaagggctgaatctcagtggatcgtggcagcaaggccactctgccacttacaataccccgtcgcgtatttaagtcgt 23988  T

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Target: scaffold0055; HSP #4
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 86 - 163
Target Start/End: Original strand, 37144 - 37221
Alignment:
Q  86 acaaggactaaatttcagtgaatcgtggcagtaaggccactctacaacttacaatacttcgctgcgtatttaagtcgt 163  Q
    |||||| || ||| |||||| |||||||||| ||||||||||| | |||||||||||  ||  |||||||||||||||    
T  37144 acaagggctgaatctcagtggatcgtggcagcaaggccactctgccacttacaataccccgtcgcgtatttaagtcgt 37221  T

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Target: scaffold0055; HSP #5
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 86 - 163
Target Start/End: Original strand, 44993 - 45070
Alignment:
Q  86 acaaggactaaatttcagtgaatcgtggcagtaaggccactctacaacttacaatacttcgctgcgtatttaagtcgt 163  Q
    |||||| || ||| |||||| |||||||||| ||||||||||| | |||||||||||  ||  |||||||||||||||    
T  44993 acaagggctgaatctcagtggatcgtggcagcaaggccactctgccacttacaataccccgtcgcgtatttaagtcgt 45070  T

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Target: scaffold0055; HSP #6
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 86 - 163
Target Start/End: Original strand, 57718 - 57795
Alignment:
Q  86 acaaggactaaatttcagtgaatcgtggcagtaaggccactctacaacttacaatacttcgctgcgtatttaagtcgt 163  Q
    |||||| || ||| |||||| |||||||||| ||||||||||| | |||||||||||  ||  |||||||||||||||    
T  57718 acaagggctgaatctcagtggatcgtggcagcaaggccactctgccacttacaataccccgtcgcgtatttaagtcgt 57795  T

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Target: scaffold0055; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 86 - 163
Target Start/End: Complemental strand, 29326 - 29249
Alignment:
Q  86 acaaggactaaatttcagtgaatcgtggcagtaaggccactctacaacttacaatacttcgctgcgtatttaagtcgt 163  Q
    |||||| || ||| |||||| |||||||||| ||||||||||| | |||||||| ||  ||  |||||||||||||||    
T  29326 acaagggctgaatctcagtggatcgtggcagcaaggccactctgccacttacaacaccccgtcgcgtatttaagtcgt 29249  T

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Target: scaffold0055; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 86 - 163
Target Start/End: Original strand, 76409 - 76485
Alignment:
Q  86 acaaggactaaatttcagtgaatcgtggcagtaaggccactctacaacttacaatacttcgctgcgtatttaagtcgt 163  Q
    |||||| || ||| |||||| |||||||||| ||||||||||| | |||||||||||  ||  |||||||||||||||    
T  76409 acaagggctgaatctcagtggatcgtggcagcaaggccactctgc-acttacaataccccgtcgcgtatttaagtcgt 76485  T

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Target: scaffold0052 (Bit Score: 34; Significance: 0.0000000007; HSPs: 8)
Name: scaffold0052
Description:

Target: scaffold0052; HSP #1
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 86 - 163
Target Start/End: Original strand, 8900 - 8977
Alignment:
Q  86 acaaggactaaatttcagtgaatcgtggcagtaaggccactctacaacttacaatacttcgctgcgtatttaagtcgt 163  Q
    |||||| || ||| |||||| |||||||||| ||||||||||| | |||||||||||  ||  |||||||||||||||    
T  8900 acaagggctgaatctcagtggatcgtggcagcaaggccactctgccacttacaataccccgtcgcgtatttaagtcgt 8977  T

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Target: scaffold0052; HSP #2
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 86 - 163
Target Start/End: Original strand, 12102 - 12179
Alignment:
Q  86 acaaggactaaatttcagtgaatcgtggcagtaaggccactctacaacttacaatacttcgctgcgtatttaagtcgt 163  Q
    |||||| || ||| |||||| |||||||||| ||||||||||| | |||||||||||  ||  |||||||||||||||    
T  12102 acaagggctgaatctcagtggatcgtggcagcaaggccactctgccacttacaataccccgtcgcgtatttaagtcgt 12179  T

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Target: scaffold0052; HSP #3
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 86 - 163
Target Start/End: Complemental strand, 16619 - 16542
Alignment:
Q  86 acaaggactaaatttcagtgaatcgtggcagtaaggccactctacaacttacaatacttcgctgcgtatttaagtcgt 163  Q
    |||||| || ||| |||||| |||||||||| ||||||||||| | |||||||||||  ||  |||||||||||||||    
T  16619 acaagggctgaatctcagtggatcgtggcagcaaggccactctgccacttacaataccccgtcgcgtatttaagtcgt 16542  T

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Target: scaffold0052; HSP #4
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 86 - 163
Target Start/End: Original strand, 20915 - 20992
Alignment:
Q  86 acaaggactaaatttcagtgaatcgtggcagtaaggccactctacaacttacaatacttcgctgcgtatttaagtcgt 163  Q
    |||||| || ||| |||||| |||||||||| ||||||||||| | |||||||||||  ||  |||||||||||||||    
T  20915 acaagggctgaatctcagtggatcgtggcagcaaggccactctgccacttacaataccccgtcgcgtatttaagtcgt 20992  T

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Target: scaffold0052; HSP #5
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 86 - 163
Target Start/End: Complemental strand, 39913 - 39836
Alignment:
Q  86 acaaggactaaatttcagtgaatcgtggcagtaaggccactctacaacttacaatacttcgctgcgtatttaagtcgt 163  Q
    |||||| || ||| |||||| |||||||||| ||||||||||| | |||||||||||  ||  |||||||||||||||    
T  39913 acaagggctgaatctcagtggatcgtggcagcaaggccactctgccacttacaataccccgtcgcgtatttaagtcgt 39836  T

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Target: scaffold0052; HSP #6
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 86 - 163
Target Start/End: Original strand, 55322 - 55399
Alignment:
Q  86 acaaggactaaatttcagtgaatcgtggcagtaaggccactctacaacttacaatacttcgctgcgtatttaagtcgt 163  Q
    |||||| || ||| |||||| |||||||||| ||||||||||| | |||||||||||  ||  |||||||||||||||    
T  55322 acaagggctgaatctcagtggatcgtggcagcaaggccactctgccacttacaataccccgtcgcgtatttaagtcgt 55399  T

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Target: scaffold0052; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 86 - 163
Target Start/End: Original strand, 43312 - 43388
Alignment:
Q  86 acaaggactaaatttcagtgaatcgtggcagtaaggccactctacaacttacaatacttcgctgcgtatttaagtcgt 163  Q
    |||||| || ||| |||||| |||||||||| ||||||||||| | |||||||||||  ||  |||||||||||||||    
T  43312 acaagggctgaatctcagtggatcgtggcagcaaggccactctgc-acttacaataccccgtcgcgtatttaagtcgt 43388  T

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Target: scaffold0052; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 86 - 163
Target Start/End: Original strand, 66739 - 66816
Alignment:
Q  86 acaaggactaaatttcagtgaatcgtggcagtaaggccactctacaacttacaatacttcgctgcgtatttaagtcgt 163  Q
    |||||| || ||| |||||| |||||||||| ||||||||||| | |||||||| ||  ||  |||||||||||||||    
T  66739 acaagggctgaatctcagtggatcgtggcagcaaggccactctgccacttacaacaccccgtcgcgtatttaagtcgt 66816  T

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