View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4205_low_16 (Length: 448)

Name: NF4205_low_16
Description: NF4205
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4205_low_16
NF4205_low_16
[»] chr1 (22 HSPs)
chr1 (1-88)||(7561441-7561528)
chr1 (215-269)||(6318806-6318860)
chr1 (183-362)||(7561820-7561992)
chr1 (215-269)||(33240980-33241034)
chr1 (79-124)||(7561715-7561760)
chr1 (215-269)||(6844363-6844417)
chr1 (215-269)||(11981613-11981667)
chr1 (215-269)||(33674880-33674934)
chr1 (215-269)||(43326094-43326148)
chr1 (216-269)||(47795571-47795624)
chr1 (215-269)||(6614397-6614451)
chr1 (215-269)||(10066008-10066062)
chr1 (215-257)||(10338307-10338349)
chr1 (215-269)||(43115095-43115149)
chr1 (215-269)||(47794731-47794785)
chr1 (215-262)||(45807887-45807934)
chr1 (231-269)||(6941739-6941777)
chr1 (215-257)||(39842693-39842735)
chr1 (215-269)||(47795836-47795890)
chr1 (215-269)||(52404312-52404366)
chr1 (228-269)||(17054140-17054181)
chr1 (219-267)||(48738399-48738447)
[»] chr8 (14 HSPs)
chr8 (215-269)||(15199631-15199685)
chr8 (215-267)||(339754-339806)
chr8 (215-267)||(35308277-35308329)
chr8 (215-269)||(1153801-1153855)
chr8 (215-269)||(5764782-5764836)
chr8 (215-269)||(6007573-6007627)
chr8 (215-269)||(40737327-40737381)
chr8 (228-267)||(1030295-1030334)
chr8 (215-266)||(24981408-24981459)
chr8 (217-263)||(13916436-13916482)
chr8 (215-269)||(17073117-17073171)
chr8 (215-269)||(17575099-17575153)
chr8 (228-257)||(342829-342858)
chr8 (228-269)||(28828169-28828210)
[»] chr6 (6 HSPs)
chr6 (215-269)||(7204942-7204996)
chr6 (215-267)||(21980809-21980861)
chr6 (215-265)||(2258842-2258892)
chr6 (215-269)||(14094193-14094246)
chr6 (228-269)||(3307480-3307521)
chr6 (228-269)||(21091926-21091967)
[»] chr5 (17 HSPs)
chr5 (215-269)||(2211370-2211424)
chr5 (215-269)||(35040886-35040940)
chr5 (215-269)||(40591212-40591266)
chr5 (215-269)||(35040056-35040110)
chr5 (215-269)||(35041438-35041492)
chr5 (215-269)||(36197580-36197634)
chr5 (215-265)||(38184193-38184243)
chr5 (215-265)||(38214114-38214164)
chr5 (215-267)||(19134659-19134711)
chr5 (215-269)||(35781744-35781798)
chr5 (228-269)||(6538169-6538210)
chr5 (228-269)||(35041657-35041698)
chr5 (215-267)||(20515428-20515480)
chr5 (215-267)||(28793904-28793956)
chr5 (215-257)||(1349556-1349598)
chr5 (215-269)||(4727994-4728048)
chr5 (215-264)||(34383281-34383329)
[»] chr2 (15 HSPs)
chr2 (215-269)||(24545768-24545822)
chr2 (215-269)||(14787102-14787156)
chr2 (219-269)||(31667418-31667468)
chr2 (215-267)||(38722753-38722805)
chr2 (218-265)||(21479311-21479358)
chr2 (215-269)||(15458847-15458901)
chr2 (215-269)||(30620507-30620561)
chr2 (215-269)||(30623128-30623182)
chr2 (215-269)||(34454021-34454075)
chr2 (215-265)||(36950471-36950521)
chr2 (215-269)||(42676367-42676421)
chr2 (228-269)||(30632170-30632211)
chr2 (215-257)||(43004814-43004856)
chr2 (215-264)||(3256003-3256052)
chr2 (215-267)||(37201553-37201605)
[»] chr4 (15 HSPs)
chr4 (215-267)||(7239030-7239082)
chr4 (215-269)||(27839101-27839155)
chr4 (229-269)||(19298655-19298695)
chr4 (219-269)||(9518929-9518979)
chr4 (215-269)||(36638712-36638766)
chr4 (215-269)||(39476318-39476372)
chr4 (215-269)||(54175737-54175791)
chr4 (215-269)||(54806985-54807039)
chr4 (215-267)||(5029114-5029166)
chr4 (229-269)||(49897491-49897531)
chr4 (228-267)||(16877094-16877133)
chr4 (228-267)||(32500176-32500215)
chr4 (218-256)||(31837767-31837805)
chr4 (215-269)||(39136170-39136224)
chr4 (215-269)||(43495727-43495781)
[»] chr3 (15 HSPs)
chr3 (215-267)||(21388553-21388605)
chr3 (210-269)||(10332998-10333057)
chr3 (215-269)||(26168019-26168073)
chr3 (215-269)||(34795171-34795225)
chr3 (215-269)||(54356170-54356224)
chr3 (228-269)||(47567890-47567931)
chr3 (215-269)||(3942707-3942760)
chr3 (215-269)||(7433731-7433785)
chr3 (215-269)||(8707920-8707974)
chr3 (215-269)||(9059807-9059861)
chr3 (215-269)||(40285173-40285227)
chr3 (228-257)||(21459526-21459555)
chr3 (215-264)||(24485731-24485780)
chr3 (228-257)||(26760481-26760510)
chr3 (215-256)||(26863171-26863212)
[»] chr7 (18 HSPs)
chr7 (215-269)||(24689241-24689295)
chr7 (228-269)||(35526393-35526434)
chr7 (215-267)||(1644435-1644487)
chr7 (215-267)||(47222647-47222699)
chr7 (212-267)||(19611040-19611095)
chr7 (215-269)||(37986133-37986187)
chr7 (231-269)||(40261848-40261886)
chr7 (215-265)||(44434824-44434874)
chr7 (232-269)||(15640286-15640323)
chr7 (228-269)||(26246765-26246806)
chr7 (228-269)||(26970634-26970675)
chr7 (215-267)||(10282819-10282871)
chr7 (230-269)||(24689672-24689711)
chr7 (215-269)||(33858134-33858189)
chr7 (215-269)||(15641130-15641184)
chr7 (215-257)||(23809083-23809125)
chr7 (215-264)||(28974843-28974892)
chr7 (215-267)||(45447718-45447770)
[»] scaffold0016 (1 HSPs)
scaffold0016 (215-265)||(205148-205197)


Alignment Details
Target: chr1 (Bit Score: 76; Significance: 6e-35; HSPs: 22)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 76; E-Value: 6e-35
Query Start/End: Original strand, 1 - 88
Target Start/End: Original strand, 7561441 - 7561528
Alignment:
Q  1 tctgtttttgttaggaaccaattgtctatgctttttcatggtaatatgtgttgccgcactaacggcttaagttagggttacgttagtg 88  Q
    ||||||||||  ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||    
T  7561441 tctgtttttggaaggaaccaattgtctatgctttttcatggtaatatgtgttgccacactaacggcttaagttagggttacgttagtg 7561528  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 215 - 269
Target Start/End: Original strand, 6318806 - 6318860
Alignment:
Q  215 ttttgacatagactaatttagagattatattttagagattttacgaaaaatcaga 269  Q
    |||||||||| | |||||||||||||||||||||||||||||| |||||||||||    
T  6318806 ttttgacataaaataatttagagattatattttagagattttatgaaaaatcaga 6318860  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 183 - 362
Target Start/End: Original strand, 7561820 - 7561992
Alignment:
Q  183 aaataatcacgagtattgtattcgtttgttggttttgacatagactaatttagagattatattttagagattttacgaaaaatcagagt--------cat 274  Q
    ||||||||||||||||||||||||||| ||| | |||||||| |||||              |||||||||| |||||||||||||| |        |||    
T  7561820 aaataatcacgagtattgtattcgttttttgatcttgacataaactaa--------------tttagagattgtacgaaaaatcagattctatcttgcat 7561905  T
Q  275 ttgtgtactgtaataaaaatcactttattctnnnnnnntaatgacagcttctcacttttattttaatccgatttttactaccgtaaac 362  Q
    |||||||| |||||||||||||||||||| |       |||||||||||||| |||||||||||||||| |||||||| |||||||||    
T  7561906 ttgtgtaccgtaataaaaatcactttatt-ttaaaaaataatgacagcttcttacttttattttaatccaatttttacgaccgtaaac 7561992  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 215 - 269
Target Start/End: Original strand, 33240980 - 33241034
Alignment:
Q  215 ttttgacatagactaatttagagattatattttagagattttacgaaaaatcaga 269  Q
    |||||||||| | |||||||||||||||||||||||||||||| |||||||||||    
T  33240980 ttttgacataaaataatttagagattatattttagagattttatgaaaaatcaga 33241034  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 79 - 124
Target Start/End: Original strand, 7561715 - 7561760
Alignment:
Q  79 tacgttagtgattgataaaacaaatagaaggaagaagaagttgaac 124  Q
    ||||||||||| ||||||||||||||||||||||||||||||||||    
T  7561715 tacgttagtgaatgataaaacaaatagaaggaagaagaagttgaac 7561760  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 215 - 269
Target Start/End: Original strand, 6844363 - 6844417
Alignment:
Q  215 ttttgacatagactaatttagagattatattttagagattttacgaaaaatcaga 269  Q
    |||||||||| | ||||||||||||||||||||||||||||||  ||||||||||    
T  6844363 ttttgacataaaataatttagagattatattttagagattttataaaaaatcaga 6844417  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 215 - 269
Target Start/End: Original strand, 11981613 - 11981667
Alignment:
Q  215 ttttgacatagactaatttagagattatattttagagattttacgaaaaatcaga 269  Q
    |||||||||| | ||||||||||||||||||||||||| |||| |||||||||||    
T  11981613 ttttgacataaaataatttagagattatattttagagactttatgaaaaatcaga 11981667  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 215 - 269
Target Start/End: Original strand, 33674880 - 33674934
Alignment:
Q  215 ttttgacatagactaatttagagattatattttagagattttacgaaaaatcaga 269  Q
    |||||||||| | ||||||||||||||||||||||| |||||| |||||||||||    
T  33674880 ttttgacataaaataatttagagattatattttagatattttatgaaaaatcaga 33674934  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 215 - 269
Target Start/End: Complemental strand, 43326148 - 43326094
Alignment:
Q  215 ttttgacatagactaatttagagattatattttagagattttacgaaaaatcaga 269  Q
    |||| ||||| | |||||||||||||||||||||||||||||| |||||||||||    
T  43326148 ttttcacataaaataatttagagattatattttagagattttatgaaaaatcaga 43326094  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 216 - 269
Target Start/End: Complemental strand, 47795624 - 47795571
Alignment:
Q  216 tttgacatagactaatttagagattatattttagagattttacgaaaaatcaga 269  Q
    ||||||||| | ||||||||||| |||||||||||||||||| |||||||||||    
T  47795624 tttgacataaaataatttagagaatatattttagagattttatgaaaaatcaga 47795571  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 215 - 269
Target Start/End: Complemental strand, 6614451 - 6614397
Alignment:
Q  215 ttttgacatagactaatttagagattatattttagagattttacgaaaaatcaga 269  Q
    |||||||||| | ||||||| ||||||||||||||| |||||| |||||||||||    
T  6614451 ttttgacataaaataatttaaagattatattttagaaattttatgaaaaatcaga 6614397  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 215 - 269
Target Start/End: Original strand, 10066008 - 10066062
Alignment:
Q  215 ttttgacatagactaatttagagattatattttagagattttacgaaaaatcaga 269  Q
    |||||||||| | ||||||||| ||||||||||||| |||||| |||||||||||    
T  10066008 ttttgacataaaataatttagaaattatattttagaaattttatgaaaaatcaga 10066062  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 215 - 257
Target Start/End: Complemental strand, 10338349 - 10338307
Alignment:
Q  215 ttttgacatagactaatttagagattatattttagagatttta 257  Q
    |||||||||| | ||||||||||||||||||||||||||||||    
T  10338349 ttttgacataaaataatttagagattatattttagagatttta 10338307  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 215 - 269
Target Start/End: Complemental strand, 43115149 - 43115095
Alignment:
Q  215 ttttgacatagactaatttagagattatattttagagattttacgaaaaatcaga 269  Q
    |||||||||| | ||||||| ||||||| |||||||||||||| |||||||||||    
T  43115149 ttttgacataaaataatttaaagattattttttagagattttatgaaaaatcaga 43115095  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 215 - 269
Target Start/End: Complemental strand, 47794785 - 47794731
Alignment:
Q  215 ttttgacatagactaatttagagattatattttagagattttacgaaaaatcaga 269  Q
    |||||||||| | ||| ||||||||||||||||| |||||||| |||||||||||    
T  47794785 ttttgacataaaataaattagagattatattttaaagattttatgaaaaatcaga 47794731  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 215 - 262
Target Start/End: Original strand, 45807887 - 45807934
Alignment:
Q  215 ttttgacatagactaatttagagattatattttagagattttacgaaa 262  Q
    |||||| ||| | |||||||||||||||||||||||||||||| ||||    
T  45807887 ttttgatataaaataatttagagattatattttagagattttatgaaa 45807934  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 231 - 269
Target Start/End: Complemental strand, 6941777 - 6941739
Alignment:
Q  231 tttagagattatattttagagattttacgaaaaatcaga 269  Q
    |||| |||||||||||||||||||||| |||||||||||    
T  6941777 tttaaagattatattttagagattttatgaaaaatcaga 6941739  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 215 - 257
Target Start/End: Original strand, 39842693 - 39842735
Alignment:
Q  215 ttttgacatagactaatttagagattatattttagagatttta 257  Q
    |||||||||| | ||||||||||||| ||||||||||||||||    
T  39842693 ttttgacataaaataatttagagattctattttagagatttta 39842735  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 215 - 269
Target Start/End: Original strand, 47795836 - 47795890
Alignment:
Q  215 ttttgacatagactaatttagagattatattttagagattttacgaaaaatcaga 269  Q
    |||||| ||| | ||||||| ||||||||||||||||||| || |||||||||||    
T  47795836 ttttgatataaaataatttatagattatattttagagattatatgaaaaatcaga 47795890  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 215 - 269
Target Start/End: Complemental strand, 52404366 - 52404312
Alignment:
Q  215 ttttgacatagactaatttagagattatattttagagattttacgaaaaatcaga 269  Q
    |||||||||| | ||||||||||||||||| |||||||||||  ||| |||||||    
T  52404366 ttttgacataaaataatttagagattatatattagagattttgtgaagaatcaga 52404312  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 228 - 269
Target Start/End: Original strand, 17054140 - 17054181
Alignment:
Q  228 taatttagagattatattttagagattttacgaaaaatcaga 269  Q
    |||||||||||||||||||||||||||  | |||||||||||    
T  17054140 taatttagagattatattttagagattaaatgaaaaatcaga 17054181  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 219 - 267
Target Start/End: Original strand, 48738399 - 48738447
Alignment:
Q  219 gacatagactaatttagagattatattttagagattttacgaaaaatca 267  Q
    |||||| | ||||||||| ||||||||||| |||||||| |||||||||    
T  48738399 gacataaaataatttagaaattatattttaaagattttatgaaaaatca 48738447  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 43; Significance: 0.000000000000003; HSPs: 14)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 215 - 269
Target Start/End: Original strand, 15199631 - 15199685
Alignment:
Q  215 ttttgacatagactaatttagagattatattttagagattttacgaaaaatcaga 269  Q
    |||||||||| | |||||||||||||||||||||||||||||| |||||||||||    
T  15199631 ttttgacataaaataatttagagattatattttagagattttatgaaaaatcaga 15199685  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 215 - 267
Target Start/End: Original strand, 339754 - 339806
Alignment:
Q  215 ttttgacatagactaatttagagattatattttagagattttacgaaaaatca 267  Q
    ||||||||| || ||||||||||||||| ||||||||||||||||||||||||    
T  339754 ttttgacatcgaataatttagagattattttttagagattttacgaaaaatca 339806  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 215 - 267
Target Start/End: Complemental strand, 35308329 - 35308277
Alignment:
Q  215 ttttgacatagactaatttagagattatattttagagattttacgaaaaatca 267  Q
    |||||||||| | |||||||||||||||||||||||||||||| |||||||||    
T  35308329 ttttgacataaaataatttagagattatattttagagattttatgaaaaatca 35308277  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 215 - 269
Target Start/End: Complemental strand, 1153855 - 1153801
Alignment:
Q  215 ttttgacatagactaatttagagattatattttagagattttacgaaaaatcaga 269  Q
    |||||| ||| | |||||||||||||||||||||||||||||| |||||||||||    
T  1153855 ttttgatataaaataatttagagattatattttagagattttatgaaaaatcaga 1153801  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 215 - 269
Target Start/End: Original strand, 5764782 - 5764836
Alignment:
Q  215 ttttgacatagactaatttagagattatattttagagattttacgaaaaatcaga 269  Q
    |||||||||| | |||||||| ||||||||||||||||||||| |||||||||||    
T  5764782 ttttgacataaaataatttagcgattatattttagagattttatgaaaaatcaga 5764836  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 215 - 269
Target Start/End: Original strand, 6007573 - 6007627
Alignment:
Q  215 ttttgacatagactaatttagagattatattttagagattttacgaaaaatcaga 269  Q
    |||||||||| | |||||||||||||||||||||||||||||  |||||||||||    
T  6007573 ttttgacataaaataatttagagattatattttagagattttgtgaaaaatcaga 6007627  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 215 - 269
Target Start/End: Original strand, 40737327 - 40737381
Alignment:
Q  215 ttttgacatagactaatttagagattatattttagagattttacgaaaaatcaga 269  Q
    ||||| |||| | |||||||||||||||||||||||||||||| |||||||||||    
T  40737327 ttttgccatataataatttagagattatattttagagattttatgaaaaatcaga 40737381  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 228 - 267
Target Start/End: Original strand, 1030295 - 1030334
Alignment:
Q  228 taatttagagattatattttagagattttacgaaaaatca 267  Q
    |||||||||||||||||||||||||||||| |||||||||    
T  1030295 taatttagagattatattttagagattttatgaaaaatca 1030334  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 215 - 266
Target Start/End: Original strand, 24981408 - 24981459
Alignment:
Q  215 ttttgacatagactaatttagagattatattttagagattttacgaaaaatc 266  Q
    ||||| |||| | |||| ||||||||||||||||||||||||| ||||||||    
T  24981408 ttttgtcataaaataatatagagattatattttagagattttatgaaaaatc 24981459  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 217 - 263
Target Start/End: Original strand, 13916436 - 13916482
Alignment:
Q  217 ttgacatagactaatttagagattatattttagagattttacgaaaa 263  Q
    |||||||| | |||||||||| ||||||||||||||||||| |||||    
T  13916436 ttgacataaaataatttagagtttatattttagagattttatgaaaa 13916482  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 215 - 269
Target Start/End: Complemental strand, 17073171 - 17073117
Alignment:
Q  215 ttttgacatagactaatttagagattatattttagagattttacgaaaaatcaga 269  Q
    |||||||||| | ||||||||||||||||| ||| |||||||  |||||||||||    
T  17073171 ttttgacataaaataatttagagattatatattatagattttgtgaaaaatcaga 17073117  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 215 - 269
Target Start/End: Original strand, 17575099 - 17575153
Alignment:
Q  215 ttttgacatagactaatttagagattatattttagagattttacgaaaaatcaga 269  Q
    |||||||||| | ||||||||||||||||| ||| |||||||  |||||||||||    
T  17575099 ttttgacataaaataatttagagattatatattatagattttgtgaaaaatcaga 17575153  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 228 - 257
Target Start/End: Complemental strand, 342858 - 342829
Alignment:
Q  228 taatttagagattatattttagagatttta 257  Q
    ||||||||||||||||||||||||||||||    
T  342858 taatttagagattatattttagagatttta 342829  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 228 - 269
Target Start/End: Complemental strand, 28828210 - 28828169
Alignment:
Q  228 taatttagagattatattttagagattttacgaaaaatcaga 269  Q
    |||||||||||||||| |||||||||||||  ||||||||||    
T  28828210 taatttagagattatagtttagagattttataaaaaatcaga 28828169  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 43; Significance: 0.000000000000003; HSPs: 6)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 215 - 269
Target Start/End: Complemental strand, 7204996 - 7204942
Alignment:
Q  215 ttttgacatagactaatttagagattatattttagagattttacgaaaaatcaga 269  Q
    |||||||||| | |||||||||||||||||||||||||||||| |||||||||||    
T  7204996 ttttgacataaaataatttagagattatattttagagattttatgaaaaatcaga 7204942  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 215 - 267
Target Start/End: Original strand, 21980809 - 21980861
Alignment:
Q  215 ttttgacatagactaatttagagattatattttagagattttacgaaaaatca 267  Q
    |||||||||| | |||||||||||||||| ||||||||||||| |||||||||    
T  21980809 ttttgacataaaataatttagagattatagtttagagattttatgaaaaatca 21980861  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 215 - 265
Target Start/End: Complemental strand, 2258892 - 2258842
Alignment:
Q  215 ttttgacatagactaatttagagattatattttagagattttacgaaaaat 265  Q
    |||||||||| | |||||||||||||||||||||||||||||  |||||||    
T  2258892 ttttgacataaaataatttagagattatattttagagattttgtgaaaaat 2258842  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 215 - 269
Target Start/End: Complemental strand, 14094246 - 14094193
Alignment:
Q  215 ttttgacatagactaatttagagattatattttagagattttacgaaaaatcaga 269  Q
    |||||||||| | ||||||||||||||| |||||||||||||| |||||||||||    
T  14094246 ttttgacataaaataatttagagattat-ttttagagattttaagaaaaatcaga 14094193  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 228 - 269
Target Start/End: Complemental strand, 3307521 - 3307480
Alignment:
Q  228 taatttagagattatattttagagattttacgaaaaatcaga 269  Q
    |||||||||||||| ||||||||||||||| |||||||||||    
T  3307521 taatttagagattacattttagagattttatgaaaaatcaga 3307480  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 228 - 269
Target Start/End: Original strand, 21091926 - 21091967
Alignment:
Q  228 taatttagagattatattttagagattttacgaaaaatcaga 269  Q
    ||||||||||||||| || ||||||||||| |||||||||||    
T  21091926 taatttagagattattttatagagattttatgaaaaatcaga 21091967  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 43; Significance: 0.000000000000003; HSPs: 17)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 215 - 269
Target Start/End: Complemental strand, 2211424 - 2211370
Alignment:
Q  215 ttttgacatagactaatttagagattatattttagagattttacgaaaaatcaga 269  Q
    |||||||||| | |||||||||||||||||||||||||||||| |||||||||||    
T  2211424 ttttgacataaaataatttagagattatattttagagattttatgaaaaatcaga 2211370  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 215 - 269
Target Start/End: Original strand, 35040886 - 35040940
Alignment:
Q  215 ttttgacatagactaatttagagattatattttagagattttacgaaaaatcaga 269  Q
    |||||||||| | |||||||||||||||||||||||||||||| |||||||||||    
T  35040886 ttttgacataaaataatttagagattatattttagagattttatgaaaaatcaga 35040940  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 215 - 269
Target Start/End: Original strand, 40591212 - 40591266
Alignment:
Q  215 ttttgacatagactaatttagagattatattttagagattttacgaaaaatcaga 269  Q
    |||||||||| | |||||||||||||||||||||||||||||| |||||||||||    
T  40591212 ttttgacataaattaatttagagattatattttagagattttatgaaaaatcaga 40591266  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 215 - 269
Target Start/End: Original strand, 35040056 - 35040110
Alignment:
Q  215 ttttgacatagactaatttagagattatattttagagattttacgaaaaatcaga 269  Q
    |||||| ||| | |||||||||||||||||||||||||||||| |||||||||||    
T  35040056 ttttgatataaaataatttagagattatattttagagattttatgaaaaatcaga 35040110  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 215 - 269
Target Start/End: Complemental strand, 35041492 - 35041438
Alignment:
Q  215 ttttgacatagactaatttagagattatattttagagattttacgaaaaatcaga 269  Q
    ||||| |||| | |||||||||||||||||||||||||||||| |||||||||||    
T  35041492 ttttgccataaaataatttagagattatattttagagattttatgaaaaatcaga 35041438  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 215 - 269
Target Start/End: Original strand, 36197580 - 36197634
Alignment:
Q  215 ttttgacatagactaatttagagattatattttagagattttacgaaaaatcaga 269  Q
    |||||||||| | ||||||||||||||| |||||||||||||| |||||||||||    
T  36197580 ttttgacataaaataatttagagattattttttagagattttatgaaaaatcaga 36197634  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 215 - 265
Target Start/End: Original strand, 38184193 - 38184243
Alignment:
Q  215 ttttgacatagactaatttagagattatattttagagattttacgaaaaat 265  Q
    |||||||||| | |||||||||||||||||||||||||||||| |||||||    
T  38184193 ttttgacataaaataatttagagattatattttagagattttatgaaaaat 38184243  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 215 - 265
Target Start/End: Complemental strand, 38214164 - 38214114
Alignment:
Q  215 ttttgacatagactaatttagagattatattttagagattttacgaaaaat 265  Q
    |||||||||| | |||||||||||||||||||||||||||||| |||||||    
T  38214164 ttttgacataaaataatttagagattatattttagagattttatgaaaaat 38214114  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 215 - 267
Target Start/End: Original strand, 19134659 - 19134711
Alignment:
Q  215 ttttgacatagactaatttagagattatattttagagattttacgaaaaatca 267  Q
    |||| ||||| | |||||||||||||||||||||||||||||| |||||||||    
T  19134659 ttttcacataaaataatttagagattatattttagagattttatgaaaaatca 19134711  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 215 - 269
Target Start/End: Complemental strand, 35781798 - 35781744
Alignment:
Q  215 ttttgacatagactaatttagagattatattttagagattttacgaaaaatcaga 269  Q
    |||||||||| | |||||||||||||||||||||||| ||||  |||||||||||    
T  35781798 ttttgacataaaataatttagagattatattttagaggttttgtgaaaaatcaga 35781744  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 228 - 269
Target Start/End: Complemental strand, 6538210 - 6538169
Alignment:
Q  228 taatttagagattatattttagagattttacgaaaaatcaga 269  Q
    ||||||||||||||||||||| |||||||| |||||||||||    
T  6538210 taatttagagattatattttaaagattttaagaaaaatcaga 6538169  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 228 - 269
Target Start/End: Complemental strand, 35041698 - 35041657
Alignment:
Q  228 taatttagagattatattttagagattttacgaaaaatcaga 269  Q
    |||||||||||||||||||||||||||||| | |||||||||    
T  35041698 taatttagagattatattttagagattttatgtaaaatcaga 35041657  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 215 - 267
Target Start/End: Complemental strand, 20515480 - 20515428
Alignment:
Q  215 ttttgacatagactaatttagagattatattttagagattttacgaaaaatca 267  Q
    |||||||||| | ||||||||||||||| ||||||||||||||  ||||||||    
T  20515480 ttttgacataaaataatttagagattattttttagagattttataaaaaatca 20515428  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 215 - 267
Target Start/End: Original strand, 28793904 - 28793956
Alignment:
Q  215 ttttgacatagactaatttagagattatattttagagattttacgaaaaatca 267  Q
    |||||||||  | ||||||||||||||||||||||| |||||| |||||||||    
T  28793904 ttttgacatcaaataatttagagattatattttagaaattttatgaaaaatca 28793956  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 215 - 257
Target Start/End: Original strand, 1349556 - 1349598
Alignment:
Q  215 ttttgacatagactaatttagagattatattttagagatttta 257  Q
    |||||||||| | ||||||||||||||||||||||||| ||||    
T  1349556 ttttgacataaaataatttagagattatattttagagacttta 1349598  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 215 - 269
Target Start/End: Complemental strand, 4728048 - 4727994
Alignment:
Q  215 ttttgacatagactaatttagagattatattttagagattttacgaaaaatcaga 269  Q
    |||||| ||| | |||||||||| |||||||||||||||| || |||||||||||    
T  4728048 ttttgatataaaataatttagagtttatattttagagattatatgaaaaatcaga 4727994  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 215 - 264
Target Start/End: Original strand, 34383281 - 34383329
Alignment:
Q  215 ttttgacatagactaatttagagattatattttagagattttacgaaaaa 264  Q
    |||||||||| | ||||||||||||||| |||||||||||||| ||||||    
T  34383281 ttttgacataaaataatttagagattat-ttttagagattttatgaaaaa 34383329  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 43; Significance: 0.000000000000003; HSPs: 15)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 215 - 269
Target Start/End: Complemental strand, 24545822 - 24545768
Alignment:
Q  215 ttttgacatagactaatttagagattatattttagagattttacgaaaaatcaga 269  Q
    |||||||||| | |||||||||||||||||||||||||||||| |||||||||||    
T  24545822 ttttgacataaaataatttagagattatattttagagattttatgaaaaatcaga 24545768  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 215 - 269
Target Start/End: Original strand, 14787102 - 14787156
Alignment:
Q  215 ttttgacatagactaatttagagattatattttagagattttacgaaaaatcaga 269  Q
    |||||||||| | |||||||||||||||||||||||||||||  |||||||||||    
T  14787102 ttttgacataaaataatttagagattatattttagagattttgtgaaaaatcaga 14787156  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 219 - 269
Target Start/End: Original strand, 31667418 - 31667468
Alignment:
Q  219 gacatagactaatttagagattatattttagagattttacgaaaaatcaga 269  Q
    |||||| | |||||||||||||||||||||||||||||| |||||||||||    
T  31667418 gacataaaataatttagagattatattttagagattttatgaaaaatcaga 31667468  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 215 - 267
Target Start/End: Original strand, 38722753 - 38722805
Alignment:
Q  215 ttttgacatagactaatttagagattatattttagagattttacgaaaaatca 267  Q
    |||||| ||| | |||||||||||||||||||||||||||||| |||||||||    
T  38722753 ttttgatataaaataatttagagattatattttagagattttatgaaaaatca 38722805  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 218 - 265
Target Start/End: Original strand, 21479311 - 21479358
Alignment:
Q  218 tgacatagactaatttagagattatattttagagattttacgaaaaat 265  Q
    ||||||| | |||||||||||||||||||||||||||||| |||||||    
T  21479311 tgacataaaataatttagagattatattttagagattttaagaaaaat 21479358  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 215 - 269
Target Start/End: Original strand, 15458847 - 15458901
Alignment:
Q  215 ttttgacatagactaatttagagattatattttagagattttacgaaaaatcaga 269  Q
    |||||||||  | ||||||||||||||| |||||||||||||| |||||||||||    
T  15458847 ttttgacattaaataatttagagattattttttagagattttatgaaaaatcaga 15458901  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 215 - 269
Target Start/End: Original strand, 30620507 - 30620561
Alignment:
Q  215 ttttgacatagactaatttagagattatattttagagattttacgaaaaatcaga 269  Q
    |||| ||||| | |||||||||||||||||||||||||||||  |||||||||||    
T  30620507 ttttcacataaaataatttagagattatattttagagattttgtgaaaaatcaga 30620561  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 215 - 269
Target Start/End: Original strand, 30623128 - 30623182
Alignment:
Q  215 ttttgacatagactaatttagagattatattttagagattttacgaaaaatcaga 269  Q
    |||| ||||| | |||||||||||||||||||||||||||||  |||||||||||    
T  30623128 ttttcacataaaataatttagagattatattttagagattttgtgaaaaatcaga 30623182  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 215 - 269
Target Start/End: Complemental strand, 34454075 - 34454021
Alignment:
Q  215 ttttgacatagactaatttagagattatattttagagattttacgaaaaatcaga 269  Q
    |||| ||||| | |||||||||||||||||||||||||||||| |||| ||||||    
T  34454075 ttttaacataaaataatttagagattatattttagagattttatgaaagatcaga 34454021  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 215 - 265
Target Start/End: Complemental strand, 36950521 - 36950471
Alignment:
Q  215 ttttgacatagactaatttagagattatattttagagattttacgaaaaat 265  Q
    |||||||||| | ||||||||||||||||||||| |||||||| |||||||    
T  36950521 ttttgacataaaataatttagagattatattttaaagattttatgaaaaat 36950471  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 215 - 269
Target Start/End: Original strand, 42676367 - 42676421
Alignment:
Q  215 ttttgacatagactaatttagagattatattttagagattttacgaaaaatcaga 269  Q
    |||||||||| |  ||||||||||||||||||| ||||||||| |||||||||||    
T  42676367 ttttgacataaaagaatttagagattatatttttgagattttatgaaaaatcaga 42676421  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 228 - 269
Target Start/End: Original strand, 30632170 - 30632211
Alignment:
Q  228 taatttagagattatattttagagattttacgaaaaatcaga 269  Q
    |||||||||||||||||||||||||||||  |||||||||||    
T  30632170 taatttagagattatattttagagattttgtgaaaaatcaga 30632211  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 215 - 257
Target Start/End: Original strand, 43004814 - 43004856
Alignment:
Q  215 ttttgacatagactaatttagagattatattttagagatttta 257  Q
    |||||||||| | ||||||||||||||||||||||| ||||||    
T  43004814 ttttgacataaaataatttagagattatattttagatatttta 43004856  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 215 - 264
Target Start/End: Original strand, 3256003 - 3256052
Alignment:
Q  215 ttttgacatagactaatttagagattatattttagagattttacgaaaaa 264  Q
    |||| ||||||| ||||||| ||||||| |||||||||||||| ||||||    
T  3256003 ttttaacatagaataatttatagattattttttagagattttatgaaaaa 3256052  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 215 - 267
Target Start/End: Original strand, 37201553 - 37201605
Alignment:
Q  215 ttttgacatagactaatttagagattatattttagagattttacgaaaaatca 267  Q
    |||||||||| | ||||||||||||||| |||| ||||||||  |||||||||    
T  37201553 ttttgacataaaataatttagagattattttttggagattttgtgaaaaatca 37201605  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 41; Significance: 0.00000000000004; HSPs: 15)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 215 - 267
Target Start/End: Complemental strand, 7239082 - 7239030
Alignment:
Q  215 ttttgacatagactaatttagagattatattttagagattttacgaaaaatca 267  Q
    |||||||||| | |||||||||||||||||||||||||||||| |||||||||    
T  7239082 ttttgacataaaataatttagagattatattttagagattttatgaaaaatca 7239030  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 215 - 269
Target Start/End: Complemental strand, 27839155 - 27839101
Alignment:
Q  215 ttttgacatagactaatttagagattatattttagagattttacgaaaaatcaga 269  Q
    |||||||||| | ||||||||||||| |||||||||||||||| |||||||||||    
T  27839155 ttttgacataaaataatttagagattgtattttagagattttatgaaaaatcaga 27839101  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 229 - 269
Target Start/End: Complemental strand, 19298695 - 19298655
Alignment:
Q  229 aatttagagattatattttagagattttacgaaaaatcaga 269  Q
    ||||||||||||||||||||||||||||| |||||||||||    
T  19298695 aatttagagattatattttagagattttatgaaaaatcaga 19298655  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 219 - 269
Target Start/End: Original strand, 9518929 - 9518979
Alignment:
Q  219 gacatagactaatttagagattatattttagagattttacgaaaaatcaga 269  Q
    |||||| | |||||||||||||||||||||||||||||  |||||||||||    
T  9518929 gacataaaataatttagagattatattttagagattttgtgaaaaatcaga 9518979  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 215 - 269
Target Start/End: Complemental strand, 36638766 - 36638712
Alignment:
Q  215 ttttgacatagactaatttagagattatattttagagattttacgaaaaatcaga 269  Q
    |||| ||||| | |||||||||||||||||||||||||||||| |||| ||||||    
T  36638766 ttttcacataaaataatttagagattatattttagagattttatgaaatatcaga 36638712  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 215 - 269
Target Start/End: Original strand, 39476318 - 39476372
Alignment:
Q  215 ttttgacatagactaatttagagattatattttagagattttacgaaaaatcaga 269  Q
    ||||||||| || ||||||||||||||| ||||||||||||||  ||||||||||    
T  39476318 ttttgacattgaataatttagagattattttttagagattttataaaaaatcaga 39476372  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 215 - 269
Target Start/End: Original strand, 54175737 - 54175791
Alignment:
Q  215 ttttgacatagactaatttagagattatattttagagattttacgaaaaatcaga 269  Q
    |||||||||| | |||||||||||||||| |||| |||||||| |||||||||||    
T  54175737 ttttgacataaaataatttagagattataatttacagattttatgaaaaatcaga 54175791  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 215 - 269
Target Start/End: Complemental strand, 54807039 - 54806985
Alignment:
Q  215 ttttgacatagactaatttagagattatattttagagattttacgaaaaatcaga 269  Q
    |||||||||| | ||| |||||||||||||||||||||||||  |||||||||||    
T  54807039 ttttgacataaaataagttagagattatattttagagattttgtgaaaaatcaga 54806985  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 215 - 267
Target Start/End: Complemental strand, 5029166 - 5029114
Alignment:
Q  215 ttttgacatagactaatttagagattatattttagagattttacgaaaaatca 267  Q
    ||||||| || | |||||||||||||||||||||||||||||  |||||||||    
T  5029166 ttttgacgtaaaataatttagagattatattttagagattttttgaaaaatca 5029114  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 229 - 269
Target Start/End: Complemental strand, 49897531 - 49897491
Alignment:
Q  229 aatttagagattatattttagagattttacgaaaaatcaga 269  Q
    ||||||||||||||||||| ||||||||| |||||||||||    
T  49897531 aatttagagattatattttcgagattttatgaaaaatcaga 49897491  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 228 - 267
Target Start/End: Original strand, 16877094 - 16877133
Alignment:
Q  228 taatttagagattatattttagagattttacgaaaaatca 267  Q
    ||||||||||||||| |||||||||||||| |||||||||    
T  16877094 taatttagagattattttttagagattttatgaaaaatca 16877133  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 228 - 267
Target Start/End: Original strand, 32500176 - 32500215
Alignment:
Q  228 taatttagagattatattttagagattttacgaaaaatca 267  Q
    ||||||||||||||| |||||||||||||| |||||||||    
T  32500176 taatttagagattattttttagagattttatgaaaaatca 32500215  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 218 - 256
Target Start/End: Complemental strand, 31837805 - 31837767
Alignment:
Q  218 tgacatagactaatttagagattatattttagagatttt 256  Q
    ||||||| | |||||||||||||||||||||||||||||    
T  31837805 tgacataaaataatttagagattatattttagagatttt 31837767  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 215 - 269
Target Start/End: Complemental strand, 39136224 - 39136170
Alignment:
Q  215 ttttgacatagactaatttagagattatattttagagattttacgaaaaatcaga 269  Q
    |||||| ||| | |||||||||||||||||||||||||||||   ||||||||||    
T  39136224 ttttgagataaaataatttagagattatattttagagattttttaaaaaatcaga 39136170  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 215 - 269
Target Start/End: Original strand, 43495727 - 43495781
Alignment:
Q  215 ttttgacatagactaatttagagattatattttagagattttacgaaaaatcaga 269  Q
    |||| ||||| | ||||||||| ||||||||||||||||| || |||||||||||    
T  43495727 ttttcacataaaataatttagatattatattttagagattgtatgaaaaatcaga 43495781  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 41; Significance: 0.00000000000004; HSPs: 15)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 215 - 267
Target Start/End: Complemental strand, 21388605 - 21388553
Alignment:
Q  215 ttttgacatagactaatttagagattatattttagagattttacgaaaaatca 267  Q
    |||||||||| | |||||||||||||||||||||||||||||| |||||||||    
T  21388605 ttttgacataaaataatttagagattatattttagagattttatgaaaaatca 21388553  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 210 - 269
Target Start/End: Original strand, 10332998 - 10333057
Alignment:
Q  210 gttggttttgacatagactaatttagagattatattttagagattttacgaaaaatcaga 269  Q
    |||| |||||||||| | ||||||||||||||||||||||||||||||  ||||||||||    
T  10332998 gttgattttgacataaaataatttagagattatattttagagattttataaaaaatcaga 10333057  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 215 - 269
Target Start/End: Complemental strand, 26168073 - 26168019
Alignment:
Q  215 ttttgacatagactaatttagagattatattttagagattttacgaaaaatcaga 269  Q
    |||||||||| | |||||||||||||||||||||||||||||  |||||||||||    
T  26168073 ttttgacataaaataatttagagattatattttagagattttgtgaaaaatcaga 26168019  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 215 - 269
Target Start/End: Complemental strand, 34795225 - 34795171
Alignment:
Q  215 ttttgacatagactaatttagagattatattttagagattttacgaaaaatcaga 269  Q
    ||||||| || | |||||||||||||||||||||||||||||| |||||||||||    
T  34795225 ttttgacgtaaaataatttagagattatattttagagattttatgaaaaatcaga 34795171  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 215 - 269
Target Start/End: Original strand, 54356170 - 54356224
Alignment:
Q  215 ttttgacatagactaatttagagattatattttagagattttacgaaaaatcaga 269  Q
    |||||||||  | |||||||||||||||||||||||||||||| |||||||||||    
T  54356170 ttttgacattaaataatttagagattatattttagagattttatgaaaaatcaga 54356224  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 228 - 269
Target Start/End: Complemental strand, 47567931 - 47567890
Alignment:
Q  228 taatttagagattatattttagagattttacgaaaaatcaga 269  Q
    ||||||||| |||||||||||||||||||| |||||||||||    
T  47567931 taatttagaaattatattttagagattttatgaaaaatcaga 47567890  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 215 - 269
Target Start/End: Complemental strand, 3942760 - 3942707
Alignment:
Q  215 ttttgacatagactaatttagagattatattttagagattttacgaaaaatcaga 269  Q
    ||||||| || | ||||||||||||||||||||||||| |||| |||||||||||    
T  3942760 ttttgacttaaaataatttagagattatattttagaga-tttatgaaaaatcaga 3942707  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 215 - 269
Target Start/End: Complemental strand, 7433785 - 7433731
Alignment:
Q  215 ttttgacatagactaatttagagattatattttagagattttacgaaaaatcaga 269  Q
    |||||||||| | |||||||||||||||||  ||||||||||  |||||||||||    
T  7433785 ttttgacataaaataatttagagattatatcgtagagattttgtgaaaaatcaga 7433731  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 215 - 269
Target Start/End: Original strand, 8707920 - 8707974
Alignment:
Q  215 ttttgacatagactaatttagagattatattttagagattttacgaaaaatcaga 269  Q
    |||| ||||| | ||||||||||||||||||||| |||||||  |||||||||||    
T  8707920 ttttcacataaaataatttagagattatattttatagattttgtgaaaaatcaga 8707974  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 215 - 269
Target Start/End: Original strand, 9059807 - 9059861
Alignment:
Q  215 ttttgacatagactaatttagagattatattttagagattttacgaaaaatcaga 269  Q
    |||| ||||| | ||||||||||||||||||||| |||||||  |||||||||||    
T  9059807 ttttcacataaaataatttagagattatattttatagattttgtgaaaaatcaga 9059861  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 215 - 269
Target Start/End: Complemental strand, 40285227 - 40285173
Alignment:
Q  215 ttttgacatagactaatttagagattatattttagagattttacgaaaaatcaga 269  Q
    |||||| ||| | |||||||||||||||||| ||||||||||  |||||||||||    
T  40285227 ttttgatataaaataatttagagattatattctagagattttgtgaaaaatcaga 40285173  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 228 - 257
Target Start/End: Original strand, 21459526 - 21459555
Alignment:
Q  228 taatttagagattatattttagagatttta 257  Q
    ||||||||||||||||||||||||||||||    
T  21459526 taatttagagattatattttagagatttta 21459555  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 215 - 264
Target Start/End: Complemental strand, 24485780 - 24485731
Alignment:
Q  215 ttttgacatagactaatttagagattatattttagagattttacgaaaaa 264  Q
    |||||||||| | ||||||  |||||||||||||||||||||| ||||||    
T  24485780 ttttgacataaaataatttttagattatattttagagattttatgaaaaa 24485731  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 228 - 257
Target Start/End: Original strand, 26760481 - 26760510
Alignment:
Q  228 taatttagagattatattttagagatttta 257  Q
    ||||||||||||||||||||||||||||||    
T  26760481 taatttagagattatattttagagatttta 26760510  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 215 - 256
Target Start/End: Complemental strand, 26863212 - 26863171
Alignment:
Q  215 ttttgacatagactaatttagagattatattttagagatttt 256  Q
    |||||||||  | |||||||||||||||||||||||||||||    
T  26863212 ttttgacatcaaataatttagagattatattttagagatttt 26863171  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 39; Significance: 0.0000000000007; HSPs: 18)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 215 - 269
Target Start/End: Original strand, 24689241 - 24689295
Alignment:
Q  215 ttttgacatagactaatttagagattatattttagagattttacgaaaaatcaga 269  Q
    |||||||||| | |||||||||||||||||||||||||||||  |||||||||||    
T  24689241 ttttgacataaaataatttagagattatattttagagattttctgaaaaatcaga 24689295  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 228 - 269
Target Start/End: Original strand, 35526393 - 35526434
Alignment:
Q  228 taatttagagattatattttagagattttacgaaaaatcaga 269  Q
    |||||||||||||||||||||||||||||| |||||||||||    
T  35526393 taatttagagattatattttagagattttatgaaaaatcaga 35526434  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 215 - 267
Target Start/End: Original strand, 1644435 - 1644487
Alignment:
Q  215 ttttgacatagactaatttagagattatattttagagattttacgaaaaatca 267  Q
    |||||||||| | ||||||| |||||||||||||||||||||| |||||||||    
T  1644435 ttttgacataaaataatttaaagattatattttagagattttatgaaaaatca 1644487  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 215 - 267
Target Start/End: Complemental strand, 47222699 - 47222647
Alignment:
Q  215 ttttgacatagactaatttagagattatattttagagattttacgaaaaatca 267  Q
    |||| ||||| | |||||||||||||||||||||||||||||| |||||||||    
T  47222699 ttttcacataaaataatttagagattatattttagagattttatgaaaaatca 47222647  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 212 - 267
Target Start/End: Original strand, 19611040 - 19611095
Alignment:
Q  212 tggttttgacatagactaatttagagattatattttagagattttacgaaaaatca 267  Q
    ||||||||||||| | ||||||||||||||| || ||||||||||| |||||||||    
T  19611040 tggttttgacataaaataatttagagattattttatagagattttatgaaaaatca 19611095  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 215 - 269
Target Start/End: Complemental strand, 37986187 - 37986133
Alignment:
Q  215 ttttgacatagactaatttagagattatattttagagattttacgaaaaatcaga 269  Q
    ||||||||| || ||||||||||||||| ||||||||||||||  ||||||||||    
T  37986187 ttttgacattgaataatttagagattattttttagagattttataaaaaatcaga 37986133  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 231 - 269
Target Start/End: Original strand, 40261848 - 40261886
Alignment:
Q  231 tttagagattatattttagagattttacgaaaaatcaga 269  Q
    ||||||||||||||||||||||||||| |||||||||||    
T  40261848 tttagagattatattttagagattttatgaaaaatcaga 40261886  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 215 - 265
Target Start/End: Complemental strand, 44434874 - 44434824
Alignment:
Q  215 ttttgacatagactaatttagagattatattttagagattttacgaaaaat 265  Q
    |||||||||| | |||| ||||||||||||||||||||||||| |||||||    
T  44434874 ttttgacataaaataatatagagattatattttagagattttatgaaaaat 44434824  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 232 - 269
Target Start/End: Original strand, 15640286 - 15640323
Alignment:
Q  232 ttagagattatattttagagattttacgaaaaatcaga 269  Q
    |||||||||||||||||||||||||| |||||||||||    
T  15640286 ttagagattatattttagagattttatgaaaaatcaga 15640323  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 228 - 269
Target Start/End: Complemental strand, 26246806 - 26246765
Alignment:
Q  228 taatttagagattatattttagagattttacgaaaaatcaga 269  Q
    ||||||||||||||||||||||||||||||  ||||||||||    
T  26246806 taatttagagattatattttagagattttataaaaaatcaga 26246765  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 228 - 269
Target Start/End: Original strand, 26970634 - 26970675
Alignment:
Q  228 taatttagagattatattttagagattttacgaaaaatcaga 269  Q
    |||||||||||||||||||||||||||||| || ||||||||    
T  26970634 taatttagagattatattttagagattttatgataaatcaga 26970675  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 215 - 267
Target Start/End: Complemental strand, 10282871 - 10282819
Alignment:
Q  215 ttttgacatagactaatttagagattatattttagagattttacgaaaaatca 267  Q
    ||||||||| || ||||||||||||||| ||||||||||||||  ||||||||    
T  10282871 ttttgacattgaataatttagagattattttttagagattttagaaaaaatca 10282819  T

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Target: chr7; HSP #13
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 230 - 269
Target Start/End: Complemental strand, 24689711 - 24689672
Alignment:
Q  230 atttagagattatattttagagattttacgaaaaatcaga 269  Q
    |||| ||||||||||||||||||||||| |||||||||||    
T  24689711 attttgagattatattttagagattttatgaaaaatcaga 24689672  T

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Target: chr7; HSP #14
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 215 - 269
Target Start/End: Complemental strand, 33858189 - 33858134
Alignment:
Q  215 ttttgacatagactaatttagagattatatttt-agagattttacgaaaaatcaga 269  Q
    |||||||||| | ||||||||||||||| |||| |||||||||| |||||||||||    
T  33858189 ttttgacataaaataatttagagattatttttttagagattttatgaaaaatcaga 33858134  T

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Target: chr7; HSP #15
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 215 - 269
Target Start/End: Complemental strand, 15641184 - 15641130
Alignment:
Q  215 ttttgacatagactaatttagagattatattttagagattttacgaaaaatcaga 269  Q
    |||||||||  | ||||||||||||||| || ||||||||||| |||||||||||    
T  15641184 ttttgacatcaaataatttagagattattttctagagattttatgaaaaatcaga 15641130  T

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Target: chr7; HSP #16
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 215 - 257
Target Start/End: Complemental strand, 23809125 - 23809083
Alignment:
Q  215 ttttgacatagactaatttagagattatattttagagatttta 257  Q
    |||||||||| | ||||||| ||||||||||||||||||||||    
T  23809125 ttttgacataaaataatttatagattatattttagagatttta 23809083  T

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Target: chr7; HSP #17
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 215 - 264
Target Start/End: Original strand, 28974843 - 28974892
Alignment:
Q  215 ttttgacatagactaatttagagattatattttagagattttacgaaaaa 264  Q
    |||||||||| |  |||||||||||||| |||||||||||||| ||||||    
T  28974843 ttttgacataaaacaatttagagattattttttagagattttatgaaaaa 28974892  T

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Target: chr7; HSP #18
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 215 - 267
Target Start/End: Complemental strand, 45447770 - 45447718
Alignment:
Q  215 ttttgacatagactaatttagagattatattttagagattttacgaaaaatca 267  Q
    |||| ||||| | |||| ||||||||||||||||| ||||||| |||||||||    
T  45447770 ttttaacataaaataatctagagattatattttagtgattttatgaaaaatca 45447718  T

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Target: scaffold0016 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: scaffold0016
Description:

Target: scaffold0016; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 215 - 265
Target Start/End: Original strand, 205148 - 205197
Alignment:
Q  215 ttttgacatagactaatttagagattatattttagagattttacgaaaaat 265  Q
    |||||||||| | ||||| |||||||||||||||||||||||| |||||||    
T  205148 ttttgacataaaataatt-agagattatattttagagattttatgaaaaat 205197  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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