View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4205_low_17 (Length: 438)
Name: NF4205_low_17
Description: NF4205
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4205_low_17 |
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Alignment Details
Target: chr5 (Bit Score: 331; Significance: 0; HSPs: 4)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 331; E-Value: 0
Query Start/End: Original strand, 7 - 357
Target Start/End: Original strand, 33062277 - 33062627
Alignment:
| Q |
7 |
gataatactagtatgtagaagtccaaatccaacatgtaggaacaacaaacaactaagcaagaatatacaatatttcaccatcaaaccatggatgacaaca |
106 |
Q |
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| T |
33062277 |
gataatactagtatgtagaagtccaaatccaacatgtaggaacaacaaacaactaagcaagaatatacaatatttcaccatcaaaccatggatgacaaca |
33062376 |
T |
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| Q |
107 |
tccacatgccaagttgagttaaatttgtatctattgtataattctttttgtgtataatatgaataatgttctaaaaatatgtttatatagataatgatgc |
206 |
Q |
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| T |
33062377 |
tccacatgtcaagttgagttaaatttgtatctagtgtatatatctttttgtgtataatatgaataatgttctaaaaatatgtttatatagataatgatgc |
33062476 |
T |
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| Q |
207 |
aagaggaagaaaattggagtcagagaaacccagagtgaatgggtatttcataaacaatatttcatatcaagaaaaattaatcagctcggtgacatcattt |
306 |
Q |
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| T |
33062477 |
aagaggaagaaaattggagtcagagaaacccagagtgaatgggtatttcataaacaatatttcatatcaagaaaaattaataagctcggtgacatcattt |
33062576 |
T |
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| Q |
307 |
tgcatctaatacattatatggctcaatcttggctaaaacatgtagtatttg |
357 |
Q |
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| T |
33062577 |
tgcatctaatacattatatggctcaatcttggctaaaacatgtagtatttg |
33062627 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 21 - 73
Target Start/End: Original strand, 33081696 - 33081748
Alignment:
| Q |
21 |
gtagaagtccaaatccaacatgtaggaacaacaaacaactaagcaagaatata |
73 |
Q |
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| T |
33081696 |
gtagaagtccaaatccaacatgtaggaacaacaaacaactaagcaagaatata |
33081748 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 370 - 425
Target Start/End: Original strand, 33062717 - 33062772
Alignment:
| Q |
370 |
tataatttaggaactcaagttagtctaaaagatgagctcattgagctagaccaaaa |
425 |
Q |
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| T |
33062717 |
tataatttaggaactcaagttagtctaaaagatgagctcattgagctagacaaaaa |
33062772 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 193 - 305
Target Start/End: Original strand, 33081782 - 33081894
Alignment:
| Q |
193 |
atagataatgatgcaagaggaagaaaattggagtcagagaaacccagagtgaatgggtatttcataaacaata---tttcatatcaagaaaaattaatca |
289 |
Q |
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| T |
33081782 |
atagataataatgcaagaggaagagaatcggagtcaga--aagtcagagtaaatgg-tatttcataaacaatagtatttcatatcaagaaaaattaataa |
33081878 |
T |
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| Q |
290 |
gctcggtgacatcatt |
305 |
Q |
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| T |
33081879 |
gatcagtgacatcatt |
33081894 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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