View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4205_low_18 (Length: 436)
Name: NF4205_low_18
Description: NF4205
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4205_low_18 |
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Alignment Details
Target: chr6 (Bit Score: 358; Significance: 0; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 358; E-Value: 0
Query Start/End: Original strand, 1 - 420
Target Start/End: Original strand, 29839118 - 29839538
Alignment:
| Q |
1 |
tgtcgattatgcaaaccgttgatttagcatcgctagggaataatgcatccatcaaaatattatgctcatgttttccatggaggtaacaactgtttcgtcc |
100 |
Q |
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| T |
29839118 |
tgtcgattatgcaaaccgttgatttagcatcgctagggaataatgcatccatcataatattatgctcatgttttccatggaggtaacaactgtttcgtcc |
29839217 |
T |
|
| Q |
101 |
atcctaaaattcattagttttcttaatactgttctaagggaannnnnnnnatctaggggatttatttcaagtaatgtaatgtctgattcgaagccaataa |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29839218 |
atcctaaaattcattagttttcttaatactgttctaagggaattttttttatctaggggatttatttcaagtaatgtaatgtctgattcgaagccaataa |
29839317 |
T |
|
| Q |
201 |
tttgtatggagaatctttcactagaataaggggaatgctcaatgtttagatactagatatcattagttttgttcacatccatattttatgtttattgatt |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29839318 |
tttgtatggagaatctttcactagaataaggggaatgctcaatgtttagatactagatatcattagttttgttcacatccatattttatgtttattgatt |
29839417 |
T |
|
| Q |
301 |
tcctttac-nnnnnnnnnccttcagggtgtagatatacaaattggaatggcgattgatagtgctaaagcaactcttgcagtgaagcgtagacttgcatgt |
399 |
Q |
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| T |
29839418 |
tcctttacttttttttttccttcagggtgtagatatacaaattggaatggcgattgatagtgctaaagcaactcttgcagtgaagcgtagacttgcatgt |
29839517 |
T |
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| Q |
400 |
gagatgctgaaatgttggcaa |
420 |
Q |
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| T |
29839518 |
gagatgctgaaatgttggcaa |
29839538 |
T |
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Target: chr1 (Bit Score: 50; Significance: 2e-19; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 323 - 420
Target Start/End: Complemental strand, 34626026 - 34625929
Alignment:
| Q |
323 |
agggtgtagatatacaaattggaatggcgattgatagtgctaaagcaactcttgcagtgaagcgtagacttgcatgtgagatgctgaaatgttggcaa |
420 |
Q |
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||||||||||||| ||| |||||||||| |||||||| | || || ||||| || ||||||||||||||||||||||||||| |||||| ||||||| |
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| T |
34626026 |
agggtgtagatatccaacttggaatggcaattgatagcaccaaggccactctcgcggtgaagcgtagacttgcatgtgagatggtgaaatattggcaa |
34625929 |
T |
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