View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4205_low_19 (Length: 435)
Name: NF4205_low_19
Description: NF4205
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4205_low_19 |
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Alignment Details
Target: chr3 (Bit Score: 388; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 388; E-Value: 0
Query Start/End: Original strand, 1 - 424
Target Start/End: Complemental strand, 42063175 - 42062752
Alignment:
| Q |
1 |
catctgaaaagcttcctgctgcattggtttcacctgaaggggagttgaaatggttcttggacaaaggtgcagcgtcaaagctgtaggtcctaaagctaag |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |||| |||||||| |
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| T |
42063175 |
catctgaaaagcttcctgctgcattggtttcacctgaaggggagttgaaatggttcttggacaaaggtgctgcgtcaaagctgtagatcctgaagctaag |
42063076 |
T |
|
| Q |
101 |
ccagttaatctatgtgttgtgctcgtgtttattttggcaataatgagtttgtgtaatggatcacataactagtactgattctccatatctcagtgatagt |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42063075 |
ccagttaatctatgtgttgtgctcgtgtttattttggcaataatgagtttgtgtaatggatcacataactagtactgattctccatatctcagtgatagt |
42062976 |
T |
|
| Q |
201 |
tgacactggagagggatctttgcagcaataagaggataaagtgaagaaagagtgcaatgcgaagttcttttggttcaaagtctaaaatttcccttgatag |
300 |
Q |
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|||||||||||||||||||||| |||||||||||||||||||||||||||||||||| || ||||||||||||||||||||||||||||||||||||||| |
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| T |
42062975 |
tgacactggagagggatctttgtagcaataagaggataaagtgaagaaagagtgcaaggcaaagttcttttggttcaaagtctaaaatttcccttgatag |
42062876 |
T |
|
| Q |
301 |
gtttcccattaatgtgaagtaactcaccctccccctcatccttcgtattcatttcagttgggatgcttccagcggaaggctgagttacgttcattactta |
400 |
Q |
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||||||||||| ||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42062875 |
gtttcccattattgtgaagcaactcaccctccccctcatctttcgtattcatttcagttgggatgcttccagcggaaggctgagttacgttcattactta |
42062776 |
T |
|
| Q |
401 |
gctgatcagattggtatgatgatg |
424 |
Q |
| |
|
|||||||||||||||||||||||| |
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|
| T |
42062775 |
gctgatcagattggtatgatgatg |
42062752 |
T |
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