View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4205_low_20 (Length: 416)
Name: NF4205_low_20
Description: NF4205
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4205_low_20 |
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Alignment Details
Target: chr1 (Bit Score: 259; Significance: 1e-144; HSPs: 5)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 259; E-Value: 1e-144
Query Start/End: Original strand, 138 - 408
Target Start/End: Complemental strand, 28909676 - 28909406
Alignment:
| Q |
138 |
aataaaattgactattagtgtaaattttttctaggatcctgccaagaaagagctcggtgagcagtttctatcccatgttgatacattcaccagagacttt |
237 |
Q |
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| T |
28909676 |
aataaaattgactattagtgtaaattttttctaggatcctgccaagaaagagctcggtgagtagttgctatcccatgttgatacattcaccagagacttt |
28909577 |
T |
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| Q |
238 |
ttcaattcattaaaagaggataccgtgcatcaatccggtatgatgtttatgcttatagatggaggagagtatctccttttttcaattataaaatagacct |
337 |
Q |
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| T |
28909576 |
ttcaattcattaaaagaggataccgtgcatcaatccggtatgatgtttatgcttataaatggaggagagtatctccttttttcaattataaaatagacct |
28909477 |
T |
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| Q |
338 |
taaaattagttattttgaatcaggtcctgctattgaattcttggagaatgctcttggaaaatttgatgatg |
408 |
Q |
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| T |
28909476 |
taaaattagttattttgaatcaggtcctgctattgaattcttggagaatgctcttggaaaatttgatgatg |
28909406 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 104; E-Value: 1e-51
Query Start/End: Original strand, 1 - 128
Target Start/End: Complemental strand, 28909832 - 28909705
Alignment:
| Q |
1 |
catactgtgatccttgatattatgaggtcaattaaggataatgagactaaggtctattgtgaattgtgatgccattgtggaagcagaaacacatcagaaa |
100 |
Q |
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| T |
28909832 |
catattgtgatccttgatattgtgaggtcaattaaggctaatgagactacggtctattgtgaattgtgatgccattgtggaatcagaaacacattagaaa |
28909733 |
T |
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| Q |
101 |
ccttaacctcaccatcatgttgtgcccc |
128 |
Q |
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| T |
28909732 |
ccttaacctcaccatcatgttgtgcccc |
28909705 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 74; E-Value: 8e-34
Query Start/End: Original strand, 152 - 408
Target Start/End: Complemental strand, 28922231 - 28921972
Alignment:
| Q |
152 |
ttagtgtaaattttttctaggatcctgccaagaaagagctcggtgagcagtttctatcccatgttgatacattcaccagagactttttcaattcattaaa |
251 |
Q |
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| T |
28922231 |
ttagtataatttttttgtaggatcctgccaagaaagagtttgctgagcagttgttatcacatgttgataccttcaccaaggaactgtttgtttcactaaa |
28922132 |
T |
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| Q |
252 |
agaggataccgtgcatcaatccggtatgatgtttatgcttatagatggaggagag---tatctccttttttcaattataaaatagaccttaaaattagtt |
348 |
Q |
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| T |
28922131 |
aggggatactgtgcaacaatccagtaagatgattaagtctataagtggatgaaagatttattttcttctttcaaatgtaaaatagacctttaaattggtt |
28922032 |
T |
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| Q |
349 |
attttgaatcaggtcctgctattgaattcttggagaatgctcttggaaaatttgatgatg |
408 |
Q |
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| T |
28922031 |
attctgaatcaggtcctacttttgaattcttggagaatgctcttggtaaatttgatgatg |
28921972 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 324 - 406
Target Start/End: Complemental strand, 28914134 - 28914052
Alignment:
| Q |
324 |
tataaaatagaccttaaaattagttattttgaatcaggtcctgctattgaattcttggagaatgctcttggaaaatttgatga |
406 |
Q |
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| T |
28914134 |
tataaaatagatttttaaaatggttattttgaatcaggtcctgcttctgatttcttggagaatgctcttggtaaatttgatga |
28914052 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 173 - 228
Target Start/End: Complemental strand, 28914599 - 28914544
Alignment:
| Q |
173 |
atcctgccaagaaagagctcggtgagcagtttctatcccatgttgatacattcacc |
228 |
Q |
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| T |
28914599 |
atcctgccaagaaagagttcggtgagcagttgttatcccatgttgatacattcacc |
28914544 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 34; Significance: 0.0000000006; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 355 - 408
Target Start/End: Complemental strand, 40288550 - 40288497
Alignment:
| Q |
355 |
aatcaggtcctgctattgaattcttggagaatgctcttggaaaatttgatgatg |
408 |
Q |
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| T |
40288550 |
aatcaggtcctgcctttgattacttggagaatgctcttggtaaatttgatgatg |
40288497 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 170 - 234
Target Start/End: Complemental strand, 40288736 - 40288672
Alignment:
| Q |
170 |
aggatcctgccaagaaagagctcggtgagcagtttctatcccatgttgatacattcaccagagac |
234 |
Q |
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| T |
40288736 |
aggatcctgcaaagaaagagtttggtgatcagttgatttctcatgttgatacattcaccaaagac |
40288672 |
T |
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