View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4205_low_21 (Length: 410)
Name: NF4205_low_21
Description: NF4205
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4205_low_21 |
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Alignment Details
Target: chr6 (Bit Score: 153; Significance: 6e-81; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 153; E-Value: 6e-81
Query Start/End: Original strand, 7 - 191
Target Start/End: Original strand, 5630252 - 5630436
Alignment:
| Q |
7 |
atgaatattttttaagaaaatgaaaacttcatttcattcttaatcagtattcaagaggaattgtataaatcaagtagaagaatagaaattctatataaaa |
106 |
Q |
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| T |
5630252 |
atgaatattttttaagaaaatgaaaacttcatttcattcttaatcagtattcaagaggaattgtataaatcaagttgaagagtagaaattctatataaaa |
5630351 |
T |
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| Q |
107 |
ttaaagaaatggttgaaaggtgcaatcatatcaactctaatgcaccgatttcaccagggtgaacaaattctgcagaaaggtgaac |
191 |
Q |
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| T |
5630352 |
ttaaagaaattgttgaaaggtgcaatcataccaacattaatgcaccgatttcatcaggatgaacaaattctgcagaaaggtgaac |
5630436 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 149; E-Value: 1e-78
Query Start/End: Original strand, 234 - 410
Target Start/End: Original strand, 5630478 - 5630654
Alignment:
| Q |
234 |
catattcttcagaagctttcaaaatttgtaatatggtatgagcatgatcatgtcctccaagatcaatcaagggtattgtcttacctgaagggtttgtgac |
333 |
Q |
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| T |
5630478 |
catattcttcagaagctttcaaaatttgtaatatggtatgagcatgatcatgtcctccaagatcaatcaagggtattgtcttacttgaagggtttgtgac |
5630577 |
T |
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| Q |
334 |
cttaccaggtctacactctagtggagtagcataggaaggtggaactgaggaatgaaaattagaccaacttgagacaa |
410 |
Q |
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| T |
5630578 |
cttaccaggtctacactctagtggttgaacaaaggaaggtggaactgaggaatgaacattagaccaacttgagacaa |
5630654 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 34; Significance: 0.0000000006; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 329 - 407
Target Start/End: Complemental strand, 16433187 - 16433105
Alignment:
| Q |
329 |
gtgaccttaccaggtctacactctag----tggagtagcataggaaggtggaactgaggaatgaaaattagaccaacttgaga |
407 |
Q |
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| T |
16433187 |
gtgaccttaccaggtctacactctagtggttggacaaaggaaggaaggtggaactgaggaattaacattagaccaacttgaga |
16433105 |
T |
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