View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4205_low_23 (Length: 348)
Name: NF4205_low_23
Description: NF4205
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4205_low_23 |
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Alignment Details
Target: chr1 (Bit Score: 278; Significance: 1e-155; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 278; E-Value: 1e-155
Query Start/End: Original strand, 13 - 332
Target Start/End: Original strand, 50086860 - 50087177
Alignment:
| Q |
13 |
cagagagagtgaaggggccaaatggtataactatgaccactcatgaactattttacagtatcaataaaatagtatttgactgaaatattcaaagtaattg |
112 |
Q |
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| T |
50086860 |
cagagagagtgaaggggccaaatggtataactatgaccactcatgaactattttacagtatcaataaaatagtatttgactgaaatattcaaagtaattg |
50086959 |
T |
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| Q |
113 |
accaaatannnnnnn-accaccttgaatgaatttcttttctcccaatagagtagtagactagagtttaacaatttcaggaatatgaactgggtaacgatc |
211 |
Q |
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| T |
50086960 |
accaaatattttttttaccaccttgaatgaatttcttttctcccaatagagta---gactagagtttaacaatttcaggaatatgaactgggtaacgatc |
50087056 |
T |
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| Q |
212 |
aatgcaatctgtccaaggtccatcaataggtgtcttaatgcttctgttacatttccaaacagcactattgcatttaaatccactgccaaatgctatctgc |
311 |
Q |
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| T |
50087057 |
aatgcaatctgtccaaggtccatcaataggtgtcttaatgcttctgttacatttccaaacagcactattgcatttaaatccactgccaaatgctatctgc |
50087156 |
T |
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| Q |
312 |
cataccctgtctcctttcttc |
332 |
Q |
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| T |
50087157 |
cataccctgtctcctttcttc |
50087177 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 90; Significance: 2e-43; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 171 - 316
Target Start/End: Original strand, 23271277 - 23271422
Alignment:
| Q |
171 |
tagagtttaacaatttcaggaatatgaactgggtaacgatcaatgcaatctgtccaaggtccatcaataggtgtcttaatgcttctgttacatttccaaa |
270 |
Q |
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||||| |||||||| ||||||||||||||||| || ||||||||||||||| ||||||||||| || |||||| ||||||||||| ||||||||||| | |
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| T |
23271277 |
tagagcttaacaatctcaggaatatgaactggatagcgatcaatgcaatcttcccaaggtccattaacaggtgttttaatgcttctattacatttccaca |
23271376 |
T |
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| Q |
271 |
cagcactattgcatttaaatccactgccaaatgctatctgccatac |
316 |
Q |
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| T |
23271377 |
cagcactattgcatttaaatccacttccaaaagctatttgccatac |
23271422 |
T |
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